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ONTOLOGY REPORT - ANNOTATIONS


Term:cytoplasmic vesicle membrane
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Accession:GO:0030659 term browser browse the term
Definition:The lipid bilayer surrounding a cytoplasmic vesicle.


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cytoplasmic vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07062512.1 RGD:13792537
G AC141959.1 RGD:8554027
G Agtrap angiotensin II receptor-associated protein JBrowse link 5 164,888,069 164,898,387 RGD:1600115
G Ahnak2 AHNAK nucleoprotein 2 JBrowse link 6 137,335,273 137,380,219 RGD:1624291
G Anxa1 annexin A1 JBrowse link 1 237,893,983 237,910,002 RGD:1600115
G Ap3m1 adaptor related protein complex 3 subunit mu 1 JBrowse link 15 3,435,998 3,454,281 RGD:1600115
G Ap3m2 adaptor related protein complex 3 subunit mu 2 JBrowse link 16 74,075,842 74,091,230 RGD:1600115
G Appbp2 amyloid beta precursor protein binding protein 2 JBrowse link 10 72,503,347 72,545,141 RGD:1624291
G Aqp11 aquaporin 11 JBrowse link 1 162,703,394 162,713,560 RGD:1600115
G Aqp2 aquaporin 2 JBrowse link 7 141,237,802 141,242,837 RGD:1600115
G Aqp5 aquaporin 5 JBrowse link 7 141,249,044 141,252,576 RGD:1600115
RGD:1624291
G Aqp7 aquaporin 7 JBrowse link 5 57,358,297 57,372,332 RGD:1600115
G Atg9b autophagy related 9B JBrowse link 4 7,314,369 7,322,095 RGD:1600115
G Avpr1a arginine vasopressin receptor 1A JBrowse link 7 67,341,366 67,345,290 RGD:1600115
G Bace1 beta-secretase 1 JBrowse link 8 50,140,092 50,162,388 RGD:1600115
G C2cd5 C2 calcium-dependent domain containing 5 JBrowse link 4 177,245,868 177,331,910 RGD:1624291
G Caly calcyon neuron-specific vesicular protein JBrowse link 1 212,537,851 212,549,040 RGD:1600115
G Camkv CaM kinase-like vesicle-associated JBrowse link 8 116,715,755 116,730,061 RGD:1600115
G Cftr CF transmembrane conductance regulator JBrowse link 4 42,693,263 42,860,679 RGD:724710
G Clic4 chloride intracellular channel 4 JBrowse link 5 153,568,937 153,625,669 RGD:1600115
G Clip1 CAP-GLY domain containing linker protein 1 JBrowse link 12 38,345,203 38,452,650 RGD:1600115
G Cyb561d2 cytochrome b561 family, member D2 JBrowse link 8 116,295,328 116,297,879 RGD:1600115
G Ece2 endothelin-converting enzyme 2 JBrowse link 11 83,948,896 83,985,429 RGD:1624291
G Fmn2 formin 2 JBrowse link 13 92,569,256 92,887,302 RGD:1624291
G Gabarapl1 GABA type A receptor associated protein like 1 JBrowse link 4 163,293,724 163,302,866 RGD:1600115
G Gabra1 gamma-aminobutyric acid type A receptor subunit alpha 1 JBrowse link 10 27,310,718 27,371,802 RGD:1600115
G Gabrb2 gamma-aminobutyric acid type A receptor subunit beta 2 JBrowse link 10 27,973,694 28,193,072 RGD:1600115
G Gabrb3 gamma-aminobutyric acid type A receptor subunit beta 3 JBrowse link 1 113,034,251 113,265,364 RGD:1600115
G Gabrg2 gamma-aminobutyric acid type A receptor subunit gamma 2 JBrowse link 10 27,090,913 27,179,786 RGD:1600115
G Gde1 glycerophosphodiester phosphodiesterase 1 JBrowse link 1 188,367,550 188,407,125 RGD:1600115
G Gper1 G protein-coupled estrogen receptor 1 JBrowse link 12 17,309,122 17,315,267 RGD:1600115
RGD:1624291
G Gpr18 G protein-coupled receptor 18 JBrowse link 15 108,323,157 108,326,907 RGD:1600115
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A JBrowse link 10 5,707,806 6,123,568 RGD:1600115
G Htt huntingtin JBrowse link 14 81,105,139 81,254,637 RGD:1600115
RGD:1624291
G Itpr1 inositol 1,4,5-trisphosphate receptor, type 1 JBrowse link 4 140,247,297 140,580,749 RGD:13792537
G Itpr2 inositol 1,4,5-trisphosphate receptor, type 2 JBrowse link 4 180,423,452 180,800,088 RGD:13792537
G Itpr3 inositol 1,4,5-trisphosphate receptor, type 3 JBrowse link 20 5,645,894 5,711,702 RGD:13792537
G Iyd iodotyrosine deiodinase JBrowse link 1 40,086,513 40,100,966 RGD:1624291
RGD:1600115
G Kcnj4 potassium inwardly-rectifying channel, subfamily J, member 4 JBrowse link 7 120,717,378 120,744,602 RGD:1600115
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 JBrowse link 1 216,293,087 216,630,339 RGD:2317968
G Kif1b kinesin family member 1B JBrowse link 5 165,994,803 166,133,497 RGD:1624291
RGD:1600115
G Lamp5 lysosomal-associated membrane protein family, member 5 JBrowse link 3 129,012,677 129,031,522 RGD:1624291
RGD:1600115
G Lnpep leucyl and cystinyl aminopeptidase JBrowse link 1 59,289,392 59,384,540 RGD:1624291
G Marchf11 membrane associated ring-CH-type finger 11 JBrowse link 2 78,825,053 78,926,402 RGD:1600115
G Marchf3 membrane associated ring-CH-type finger 3 JBrowse link 18 51,844,980 51,998,017 RGD:1600115
G Mfsd10 major facilitator superfamily domain containing 10 JBrowse link 14 81,362,594 81,366,208 RGD:1624291
G Mpeg1 macrophage expressed 1 JBrowse link 1 228,724,559 228,729,054 RGD:1600115
G Mreg melanoregulin JBrowse link 9 79,490,058 79,559,768 RGD:1624291
G Myo1c myosin 1C JBrowse link 10 63,803,311 63,819,614 RGD:1624291
G Ncstn nicastrin JBrowse link 13 90,451,046 90,467,256 RGD:1600115
G Nmnat2 nicotinamide nucleotide adenylyltransferase 2 JBrowse link 13 70,379,346 70,559,311 RGD:1600115
G Nsg1 neuronal vesicle trafficking associated 1 JBrowse link 14 77,380,264 77,402,007 RGD:1600115
G Nsg2 neuronal vesicle trafficking associated 2 JBrowse link 10 15,867,885 15,928,169 RGD:1624291
RGD:1600115
G Pacsin1 protein kinase C and casein kinase substrate in neurons 1 JBrowse link 20 7,241,248 7,286,702 RGD:1600115
G Pacsin2 protein kinase C and casein kinase substrate in neurons 2 JBrowse link 7 124,224,210 124,317,407 RGD:1600115
G Pde6d phosphodiesterase 6D JBrowse link 9 93,562,099 93,607,061 RGD:1600115
G Rab11a RAB11a, member RAS oncogene family JBrowse link 8 70,192,975 70,215,719 RGD:1600115
G Rab13 RAB13, member RAS oncogene family JBrowse link 2 189,581,209 189,586,358 RGD:1600115
G Rab14 RAB14, member RAS oncogene family JBrowse link 3 14,373,270 14,395,357 RGD:1600115
G Rab21 RAB21, member RAS oncogene family JBrowse link 7 58,261,985 58,286,770 RGD:1600115
G Rab8a RAB8A, member RAS oncogene family JBrowse link 16 19,355,047 19,376,776 RGD:1600115
G Rab9a RAB9A, member RAS oncogene family JBrowse link X 29,525,256 29,547,295 RGD:1624291
G Rhbg Rh family B glycoprotein JBrowse link 2 187,610,081 187,622,408 RGD:1600115
G Ryr1 ryanodine receptor 1 JBrowse link 1 87,959,596 88,066,252 RGD:13792537
G Ryr2 ryanodine receptor 2 JBrowse link 17 65,533,998 65,955,606 RGD:13792537
G Ryr3 ryanodine receptor 3 JBrowse link 3 104,117,307 104,665,151 RGD:13792537
G Scamp1 secretory carrier membrane protein 1 JBrowse link 2 23,858,021 23,941,128 RGD:1624291
G Scnn1b sodium channel epithelial 1 subunit beta JBrowse link 1 191,829,547 191,883,991 RGD:1600115
G Sgsm1 small G protein signaling modulator 1 JBrowse link 12 49,329,093 49,395,078 RGD:1624291
G Sh3bp5 SH3-domain binding protein 5 JBrowse link 16 7,473,367 7,559,976 RGD:1624291
G Sh3kbp1 SH3 domain-containing kinase-binding protein 1 JBrowse link X 37,790,004 38,196,365 RGD:1600115
G Slc12a2 solute carrier family 12 member 2 JBrowse link 18 52,917,124 52,985,281 RGD:1624291
G Slc2a4 solute carrier family 2 member 4 JBrowse link 10 56,552,921 56,558,562 RGD:1600115
RGD:1624291
G Slc2a8 solute carrier family 2 member 8 JBrowse link 3 12,020,227 12,029,920 RGD:1600115
G Smagp small cell adhesion glycoprotein JBrowse link 7 142,244,295 142,260,896 RGD:1600115
G Snap23 synaptosome associated protein 23 JBrowse link 3 112,333,972 112,362,960 RGD:1600115
G Snca synuclein alpha JBrowse link 4 90,782,412 90,883,236 RGD:5129111
G Snx15 sorting nexin 15 JBrowse link 1 221,487,058 221,496,200 RGD:1600115
G Snx17 sorting nexin 17 JBrowse link 6 26,541,137 26,546,650 RGD:1600115
G Snx18 sorting nexin 18 JBrowse link 2 45,454,782 45,480,798 RGD:1600115
G Snx24 sorting nexin 24 JBrowse link 18 48,201,653 48,355,701 RGD:1600115
G Snx33 sorting nexin 33 JBrowse link 8 61,584,656 61,596,055 RGD:1600115
G Snx5 sorting nexin 5 JBrowse link 3 138,378,032 138,397,944 RGD:1600115
G Snx9 sorting nexin 9 JBrowse link 1 46,780,142 46,826,250 RGD:1624291
G Sort1 sortilin 1 JBrowse link 2 211,078,092 211,156,312 RGD:1624291
G Spire1 spire-type actin nucleation factor 1 JBrowse link 18 63,226,557 63,357,420 RGD:1624291
G Spire2 spire-type actin nucleation factor 2 JBrowse link 19 56,136,904 56,175,500 RGD:1624291
G Taok2 TAO kinase 2 JBrowse link 1 198,301,789 198,354,601 RGD:1600115
G Th tyrosine hydroxylase JBrowse link 1 216,073,034 216,080,287 RGD:5129111
G Tmem184a transmembrane protein 184A JBrowse link 12 16,906,863 16,924,143 RGD:1600115
G Tmem67 transmembrane protein 67 JBrowse link 5 25,666,138 25,721,056 RGD:8554391
RGD:1624291
RGD:1600115
G Tnk2 tyrosine kinase, non-receptor, 2 JBrowse link 11 71,348,726 71,388,520 RGD:1600115
G Tor1a torsin family 1, member A JBrowse link 3 9,800,322 9,807,318 RGD:1304300
G Trarg1 trafficking regulator of GLUT4 (SLC2A4) 1 JBrowse link 10 63,471,330 63,491,713 RGD:1600115
RGD:1624291
RGD:13673815
G Trim72 tripartite motif containing 72 JBrowse link 1 199,450,042 199,457,902 RGD:1600115
RGD:1624291
G Trpm2 transient receptor potential cation channel, subfamily M, member 2 JBrowse link 20 11,434,062 11,482,880 RGD:1624291
RGD:1600115
G Ulk1 unc-51 like autophagy activating kinase 1 JBrowse link 12 51,908,105 51,934,704 RGD:1624291
G Vamp2 vesicle-associated membrane protein 2 JBrowse link 10 55,675,171 55,679,405 RGD:1624291
G Vamp5 vesicle-associated membrane protein 5 JBrowse link 4 100,231,561 100,232,560 RGD:1624291
RGD:1600115
G Vopp1 VOPP1 WW domain binding protein JBrowse link 4 88,441,067 88,515,141 RGD:1624291
G Wls Wnt ligand secretion mediator JBrowse link 2 266,315,036 266,431,220 RGD:1600115
G Ykt6 YKT6 v-SNARE homolog JBrowse link 14 86,196,018 86,207,057 RGD:1600115
G Zdhhc17 zinc finger DHHC-type palmitoyltransferase 17 JBrowse link 7 53,651,529 53,715,007 RGD:1600115
G Znrf2 zinc and ring finger 2 JBrowse link 4 85,009,350 85,090,914 RGD:1624291
acrosomal membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acrbp acrosin binding protein JBrowse link 4 157,563,990 157,577,045 RGD:1600115
RGD:1624291
G Bsg basigin (Ok blood group) JBrowse link 7 12,875,536 12,882,753 RGD:1624291
G Cav1 caveolin 1 JBrowse link 4 44,597,123 44,630,206 RGD:1624291
RGD:1600115
G Cav2 caveolin 2 JBrowse link 4 44,573,264 44,580,640 RGD:1624291
RGD:1600115
G Ccdc136 coiled-coil domain containing 136 JBrowse link 4 56,674,737 56,704,501 RGD:1624291
G Eqtn equatorin JBrowse link 5 113,852,191 113,881,142 RGD:1624291
RGD:13792537
G Flot2 flotillin 2 JBrowse link 10 65,304,901 65,329,332 RGD:1624291
G Hyal3 hyaluronidase 3 JBrowse link 8 116,336,512 116,342,147 RGD:1600115
RGD:1624291
G Ift88 intraflagellar transport 88 JBrowse link 15 37,690,417 37,786,855 RGD:1624291
G Izumo1 izumo sperm-egg fusion 1 JBrowse link 1 101,603,222 101,608,977 RGD:1600115
RGD:1624291
G Pcsk4 proprotein convertase subtilisin/kexin type 4 JBrowse link 7 12,247,498 12,255,721 RGD:1624291
RGD:1600115
G Pla1a phospholipase A1 member A JBrowse link 11 64,882,024 64,919,714 RGD:1624291
G Serpina5 serpin family A member 5 JBrowse link 6 127,753,152 127,772,403 RGD:1624291
G Slc2a3 solute carrier family 2 member 3 JBrowse link 4 155,549,991 155,626,018 RGD:1624291
G Spaca1 sperm acrosome associated 1 JBrowse link 5 49,424,064 49,439,180 RGD:1624291
RGD:13792537
G Spaca3 sperm acrosome associated 3 JBrowse link 10 68,227,736 68,235,295 RGD:1624291
G Spata31a5 SPATA31 subfamily A member 5 JBrowse link 17 2,417,700 2,423,486 RGD:1600115
G Sun1 Sad1 and UNC84 domain containing 1 JBrowse link 12 17,488,482 17,533,334 RGD:1624291
G Tekt3 tektin 3 JBrowse link 10 49,472,520 49,506,473 RGD:8655532
G Tex101 testis expressed 101 JBrowse link 1 81,529,776 81,534,149 RGD:1624291
RGD:1600115
G Tmem225 transmembrane protein 225 JBrowse link 8 44,001,199 44,003,757 RGD:1600115
G Tmem95 transmembrane protein 95 JBrowse link 10 56,486,778 56,488,723 RGD:1624291
G Trip11 thyroid hormone receptor interactor 11 JBrowse link 6 125,741,520 125,812,926 RGD:1624291
alveolar lamellar body membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abca3 ATP binding cassette subfamily A member 3 JBrowse link 10 13,723,365 13,780,558 RGD:1598549
RGD:1624291
G Lamp3 lysosomal-associated membrane protein 3 JBrowse link 11 84,930,965 85,000,694 RGD:1624291
RGD:11041051
anchored component of synaptic vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cplx3 complexin 3 JBrowse link 8 62,379,502 62,386,264 RGD:1624291
G Dnajc5 DnaJ heat shock protein family (Hsp40) member C5 JBrowse link 3 177,012,714 177,047,787 RGD:13702369
RGD:632551
G Rab10 RAB10, member RAS oncogene family JBrowse link 6 27,668,387 27,721,120 RGD:13432355
G Rab11b RAB11B, member RAS oncogene family JBrowse link 7 18,598,991 18,612,132 RGD:12050113
RGD:13432355
G Rab14 RAB14, member RAS oncogene family JBrowse link 3 14,373,270 14,395,357 RGD:13432355
G Rab26 RAB26, member RAS oncogene family JBrowse link 10 13,894,271 13,898,578 RGD:1624291
G Rab27b RAB27B, member RAS oncogene family JBrowse link 18 68,486,006 68,644,595 RGD:13432355
G Rab2a RAB2A, member RAS oncogene family JBrowse link 5 21,632,654 21,696,721 RGD:13432355
G Rab35 RAB35, member RAS oncogene family JBrowse link 12 46,704,274 46,718,404 RGD:13432355
G Rab3a RAB3A, member RAS oncogene family JBrowse link 16 20,435,098 20,439,206 RGD:12050113
RGD:1624291
RGD:13792537
RGD:13432355
G Rab3b RAB3B, member RAS oncogene family JBrowse link 5 128,501,789 128,568,170 RGD:13432355
RGD:1624291
RGD:12050113
G Rab3c RAB3C, member RAS oncogene family JBrowse link 2 41,570,955 41,786,681 RGD:13702220
G Rab4a RAB4A, member RAS oncogene family JBrowse link 19 56,585,598 56,613,078 RGD:13432355
G Rab4b RAB4B, member RAS oncogene family JBrowse link 1 83,979,298 83,990,680 RGD:13432355
G Rab5a RAB5A, member RAS oncogene family JBrowse link 9 5,910 6,065 RGD:12050113
RGD:13432355
RGD:13792537
G Rab5al1 Rab5a, member RAS oncogene family-like 1 JBrowse link 14 72,889,022 72,891,156 RGD:12050113
RGD:13432355
RGD:13792537
G Rab5b RAB5B, member RAS oncogene family JBrowse link 7 3,104,530 3,123,384 RGD:13432355
G Rab5c RAB5C, member RAS oncogene family JBrowse link 10 88,621,924 88,645,364 RGD:13432355
G Rab7a RAB7A, member RAS oncogene family JBrowse link 4 119,910,461 119,963,065 RGD:1624291
RGD:13432355
G Syn1 synapsin I JBrowse link X 1,321,315 1,379,202 RGD:12050113
AP-1 adaptor complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aftph aftiphilin JBrowse link 14 104,921,633 104,975,763 RGD:1624291
RGD:13792537
G Ap1g2 adaptor related protein complex 1 subunit gamma 2 JBrowse link 15 33,759,108 33,767,017 RGD:13792537
G Clba1 clathrin binding box of aftiphilin containing 1 JBrowse link 6 137,386,694 137,393,490 RGD:13792537
G Slc18a3 solute carrier family 18 member A3 JBrowse link 16 8,682,668 8,685,529 RGD:2317430
RGD:13792537
AP-2 adaptor complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ap2a1 adaptor related protein complex 2 subunit alpha 1 JBrowse link 1 100,896,582 100,926,443 RGD:1624291
RGD:13792537
G Ap2a2 adaptor related protein complex 2 subunit alpha 2 JBrowse link 1 214,534,217 214,607,497 RGD:12793054
RGD:13792537
RGD:1624291
RGD:1600115
G Ap2b1 adaptor related protein complex 2 subunit beta 1 JBrowse link 10 70,516,462 70,621,973 RGD:1624291
G Ap2m1 adaptor related protein complex 2 subunit mu 1 JBrowse link 11 84,041,184 84,047,542 RGD:12793054
RGD:13792537
RGD:1624291
G Ap2s1 adaptor related protein complex 2 subunit sigma 1 JBrowse link 1 78,671,238 78,682,847 RGD:727584
RGD:2306270
RGD:1624291
G Btbd8 BTB domain containing 8 JBrowse link 14 3,282,422 3,351,740 RGD:13601995
RGD:1624291
RGD:1600115
G Eps15 epidermal growth factor receptor pathway substrate 15 JBrowse link 5 128,923,809 129,022,268 RGD:1624291
G Picalm phosphatidylinositol binding clathrin assembly protein JBrowse link 1 154,377,229 154,458,966 RGD:1624291
RGD:1600115
G Sgip1 SH3GL interacting endocytic adaptor 1 JBrowse link 5 122,300,415 122,498,478 RGD:1600115
RGD:8554282
RGD:1624291
G Slc18a3 solute carrier family 18 member A3 JBrowse link 16 8,682,668 8,685,529 RGD:2317430
RGD:13792537
G Tbc1d5 TBC1 domain family, member 5 JBrowse link 9 1,144,641 1,747,732 RGD:1624291
azurophil granule membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Vamp1 vesicle-associated membrane protein 1 JBrowse link 4 157,726,941 157,733,644 RGD:1624291
G Vamp7 vesicle-associated membrane protein 7 JBrowse link 12 18,996,566 19,033,714 RGD:1624291
G Vamp8 vesicle-associated membrane protein 8 JBrowse link 4 100,250,301 100,252,756 RGD:1600115
RGD:1624291
chromaffin granule membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Anxa7 annexin A7 JBrowse link 15 4,254,470 4,281,296 RGD:1624291
G Dbh dopamine beta-hydroxylase JBrowse link 3 5,709,236 5,731,895 RGD:1600115
G Dnajc5 DnaJ heat shock protein family (Hsp40) member C5 JBrowse link 3 177,012,714 177,047,787 RGD:1600115
G Sri sorcin JBrowse link 4 23,004,657 23,029,233 RGD:1624291
G Syt1 synaptotagmin 1 JBrowse link 7 50,084,063 50,638,996 RGD:1600115
G Syt2 synaptotagmin 2 JBrowse link 13 51,569,248 51,577,824 RGD:1600115
clathrin coat of endocytic vesicle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Epn2 epsin 2 JBrowse link 10 47,795,496 47,857,373 RGD:708327
RGD:1600115
clathrin coat of trans-Golgi network vesicle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC105531.1 RGD:13792537
G Clta clathrin, light chain A JBrowse link 5 59,490,689 59,509,139 RGD:1600115
G Cltb clathrin, light chain B JBrowse link 17 10,537,348 10,554,999 RGD:1600115
G Cltc clathrin heavy chain JBrowse link 10 74,014,560 74,070,578 RGD:1600115
G Dnm1l dynamin 1-like JBrowse link 11 88,830,968 88,882,271 RGD:11535088
G Synrg synergin, gamma JBrowse link 10 71,278,698 71,357,791 RGD:631945
RGD:13792537
clathrin vesicle coat term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clint1 clathrin interactor 1 JBrowse link 10 30,833,914 31,007,813 RGD:13792537
G Clta clathrin, light chain A JBrowse link 5 59,490,689 59,509,139 RGD:70686
RGD:13792537
G Cltb clathrin, light chain B JBrowse link 17 10,537,348 10,554,999 RGD:70686
RGD:13792537
G Enthd1 ENTH domain containing 1 JBrowse link 7 121,668,857 121,784,530 RGD:13792537
G Epn1 Epsin 1 JBrowse link 1 72,294,153 72,310,217 RGD:13792537
G Epn2 epsin 2 JBrowse link 10 47,795,496 47,857,373 RGD:13792537
G Epn3 epsin 3 JBrowse link 10 82,220,762 82,231,200 RGD:13792537
G Necap1 NECAP endocytosis associated 1 JBrowse link 4 155,709,712 155,724,801 RGD:1624291
RGD:13792537
G Necap2 NECAP endocytosis associated 2 JBrowse link 5 159,589,856 159,602,260 RGD:1624291
RGD:13792537
RGD:1600115
clathrin-coated endocytic vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clta clathrin, light chain A JBrowse link 5 59,490,689 59,509,139 RGD:1600115
G Cltc clathrin heavy chain JBrowse link 10 74,014,560 74,070,578 RGD:1600115
G Tyrp1 tyrosinase-related protein 1 JBrowse link 5 98,387,291 98,406,083 RGD:1624291
clathrin-coated vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adcy8 adenylate cyclase 8 JBrowse link 7 105,353,883 105,593,372 RGD:1600115
G Ap1b1 adaptor related protein complex 1 subunit beta 1 JBrowse link 14 85,230,652 85,281,806 RGD:1600115
G Ap1m1 adaptor related protein complex 1 subunit mu 1 JBrowse link 16 19,288,354 19,303,818 RGD:1600115
G Ap1m2 adaptor related protein complex 1 subunit mu 2 JBrowse link 8 22,318,941 22,336,827 RGD:1600115
G Cemip cell migration inducing hyaluronidase JBrowse link 1 146,069,774 146,226,320 RGD:1624291
RGD:1600115
G Dab2 DAB adaptor protein 2 JBrowse link 2 55,747,353 55,768,848 RGD:7243162
G Dbnl drebrin-like JBrowse link 14 86,029,335 86,044,364 RGD:1600115
G Dennd1a DENN domain containing 1A JBrowse link 3 22,061,120 22,501,502 RGD:1624291
G Reep6 receptor accessory protein 6 JBrowse link 7 12,240,059 12,246,814 RGD:1600115
G Syt11 synaptotagmin 11 JBrowse link 2 188,112,301 188,138,180 RGD:1600115
G Vamp3 vesicle-associated membrane protein 3 JBrowse link 5 168,126,157 168,136,628 RGD:4892574
G Vti1a vesicle transport through interaction with t-SNAREs 1A JBrowse link 1 276,310,072 276,508,635 RGD:1600115
coated vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tepsin TEPSIN, adaptor related protein complex 4 accessory protein JBrowse link 10 109,271,161 109,278,745 RGD:11250428
RGD:1624291
COPI vesicle coat term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07071244.1 RGD:13792537
G Arcn1 archain 1 JBrowse link 8 49,051,257 49,075,861 RGD:13792537
G Copa COPI coat complex subunit alpha JBrowse link 13 90,467,285 90,508,894 RGD:1624291
RGD:13792537
G Copb1 COPI coat complex subunit beta 1 JBrowse link 1 183,695,480 183,729,569 RGD:632446
RGD:13792537
G Copb2 COPI coat complex subunit beta 2 JBrowse link 8 106,582,339 106,603,763 RGD:1624291
RGD:13792537
G Cope COPI coat complex subunit epsilon JBrowse link 16 20,863,141 20,873,516 RGD:13792537
G Copg1 COPI coat complex subunit gamma 1 JBrowse link 4 119,815,041 119,840,997 RGD:1600115
RGD:13792537
G Copg2 COPI coat complex subunit gamma 2 JBrowse link 4 58,064,394 58,195,242 RGD:1600115
RGD:13792537
RGD:1624291
G Copz1 COPI coat complex subunit zeta 1 JBrowse link 7 144,900,050 144,926,299 RGD:1624291
RGD:13792537
G Copz2 COPI coat complex subunit zeta 2 JBrowse link 10 84,718,824 84,731,880 RGD:1624291
RGD:13792537
G Dipk2a divergent protein kinase domain 2A JBrowse link 8 102,140,713 102,159,828 RGD:1624291
RGD:13792537
G Hmces 5-hydroxymethylcytosine binding, ES cell specific JBrowse link 4 119,841,088 119,864,115 RGD:1600115
G Scyl1 SCY1 like pseudokinase 1 JBrowse link 1 221,115,992 221,129,668 RGD:1624291
G Tmed3 transmembrane p24 trafficking protein 3 JBrowse link 8 97,075,194 97,083,107 RGD:1599272
RGD:13792537
COPI-coated vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Golga5 golgin A5 JBrowse link 6 126,350,572 126,378,735 RGD:1599272
G Kdelr1 KDEL endoplasmic reticulum protein retention receptor 1 JBrowse link 1 101,859,346 101,870,232 RGD:1624291
G Kdelr2 KDEL endoplasmic reticulum protein retention receptor 2 JBrowse link 12 13,192,452 13,210,758 RGD:1600115
RGD:1624291
G Kdelr3 KDEL endoplasmic reticulum protein retention receptor 3 JBrowse link 7 120,749,680 120,760,163 RGD:1624291
G Tmed2 transmembrane p24 trafficking protein 2 JBrowse link 12 37,471,259 37,480,344 RGD:1600115
G Tmed7 transmembrane p24 trafficking protein 7 JBrowse link 18 40,579,182 40,586,260 RGD:1600115
G Tmem199 transmembrane protein 199 JBrowse link 10 65,775,721 65,780,293 RGD:1624291
RGD:1600115
COPII vesicle coat term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07041481.1 RGD:13792537
G Klhl12 kelch-like family member 12 JBrowse link 13 51,280,933 51,314,753 RGD:1600115
RGD:1624291
G Pdcd6 programmed cell death 6 JBrowse link 1 31,576,183 31,591,852 RGD:1624291
RGD:1600115
G Pef1 penta-EF hand domain containing 1 JBrowse link 5 148,320,610 148,343,876 RGD:1624291
RGD:1600115
G Sar1a secretion associated, Ras related GTPase 1A JBrowse link 20 31,298,269 31,310,676 RGD:1624291
G Sar1b secretion associated, Ras related GTPase 1B JBrowse link 10 37,215,989 37,245,603 RGD:13792537
G Sec13 SEC13 homolog, nuclear pore and COPII coat complex component JBrowse link 4 145,686,186 145,699,577 RGD:1624291
RGD:13792537
G Sec23a Sec23 homolog A, COPII coat complex component JBrowse link 6 80,059,742 80,107,340 RGD:1624291
RGD:13792537
G Sec23b Sec23 homolog B, COPII coat complex component JBrowse link 3 138,715,118 138,757,111 RGD:13792537
G Sec24a SEC24 homolog A, COPII coat complex component JBrowse link 10 37,138,539 37,215,899 RGD:1624291
RGD:13792537
G Sec24b SEC24 homolog B, COPII coat complex component JBrowse link 2 230,286,886 230,356,887 RGD:1624291
RGD:13792537
G Sec24c SEC24 homolog C, COPII coat complex component JBrowse link 15 4,035,196 4,057,209 RGD:1624291
RGD:13792537
G Sec24d SEC24 homolog D, COPII coat complex component JBrowse link 2 227,455,704 227,562,801 RGD:1624291
RGD:13792537
G Sec31a SEC31 homolog A, COPII coat complex component JBrowse link 14 10,854,713 10,909,579 RGD:1600115
RGD:13792537
RGD:1624291
G Sec31b SEC31 homolog B, COPII coat complex component JBrowse link 1 264,266,279 264,294,687 RGD:13792537
dense core granule membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adam8 ADAM metallopeptidase domain 8 JBrowse link 1 212,317,510 212,332,895 RGD:1624291
G Vps13c vacuolar protein sorting 13 homolog C JBrowse link 8 73,682,814 73,843,290 RGD:1624291
early phagosome membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Appl2 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 JBrowse link 7 26,256,179 26,306,128 RGD:1624291
G Rab31 RAB31, member RAS oncogene family JBrowse link 9 113,370,072 113,504,606 RGD:1600115
RGD:1624291
endocytic vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cubn cubilin JBrowse link 17 80,584,921 80,807,181 RGD:2317835
G Scarb2 scavenger receptor class B, member 2 JBrowse link 14 17,064,173 17,115,620 RGD:1624291
ER to Golgi transport vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gosr2 golgi SNAP receptor complex member 2 JBrowse link 10 91,735,772 91,756,123 RGD:13792537
G LOC100912478 vacuolar ATPase assembly integral membrane protein VMA21-like JBrowse link 17 35,126,955 35,134,495 RGD:1600115
G LOC103689964 vacuolar ATPase assembly integral membrane protein Vma21 JBrowse link 17 34,940,424 34,946,009 RGD:1600115
G LOC103694079 vacuolar ATPase assembly integral membrane protein Vma21-like JBrowse link 17 35,121,571 35,126,402 RGD:1600115
G Scap SREBF chaperone JBrowse link 8 118,551,869 118,628,650 RGD:1600115
G Sec16a SEC16 homolog A, endoplasmic reticulum export factor JBrowse link 3 3,856,218 3,890,785 RGD:13792537
G Sec16b SEC16 homolog B, endoplasmic reticulum export factor JBrowse link 13 75,153,074 75,216,941 RGD:13792537
G Sec22b SEC22 homolog B, vesicle trafficking protein JBrowse link 2 200,076,079 200,096,861 RGD:1624291
RGD:13792537
G Sec23a Sec23 homolog A, COPII coat complex component JBrowse link 6 80,059,742 80,107,340 RGD:1624291
G Srebf1 sterol regulatory element binding transcription factor 1 JBrowse link 10 46,570,996 46,593,021 RGD:1600115
G Srebf2 sterol regulatory element binding transcription factor 2 JBrowse link 7 123,381,082 123,438,605 RGD:1600115
G Stx17 syntaxin 17 JBrowse link 5 63,866,346 63,926,276 RGD:1600115
G Tmed7 transmembrane p24 trafficking protein 7 JBrowse link 18 40,579,182 40,586,260 RGD:1600115
G Uso1 USO1 vesicle transport factor JBrowse link 14 17,371,451 17,436,948 RGD:1600115
RGD:13792537
G Vma21 vacuolar ATPase assembly factor VMA21 JBrowse link 16 70,142,561 70,151,833 RGD:1600115
G Vti1a vesicle transport through interaction with t-SNAREs 1A JBrowse link 1 276,310,072 276,508,635 RGD:13792537
G Vti1b vesicle transport through interaction with t-SNAREs 1B JBrowse link 6 102,340,261 102,353,612 RGD:13792537
extrinsic component of neuronal dense core vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cadps calcium dependent secretion activator JBrowse link 15 15,275,489 15,690,575 RGD:13702263
G Kif1a kinesin family member 1A JBrowse link 9 100,171,851 100,253,626 RGD:14995321
G Stxbp5 syntaxin binding protein 5 JBrowse link 1 3,858,917 4,011,684 RGD:1624291
extrinsic component of synaptic vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Amph amphiphysin JBrowse link 17 48,304,324 48,562,838 RGD:13702221
G Atp6v1b1 ATPase H+ transporting V1 subunit B1 JBrowse link 4 115,417,100 115,435,754 RGD:12050113
G Bin1 bridging integrator 1 JBrowse link 18 25,163,575 25,222,139 RGD:631926
G Cltc clathrin heavy chain JBrowse link 10 74,014,560 74,070,578 RGD:13702292
G Doc2a double C2 domain alpha JBrowse link 1 198,282,828 198,288,611 RGD:1357915
G Rph3a rabphilin 3A JBrowse link 12 41,073,296 41,149,799 RGD:12050113
RGD:13702383
G Sgta small glutamine rich tetratricopeptide repeat containing alpha JBrowse link 7 11,521,949 11,538,691 RGD:13702369
G Syn1 synapsin I JBrowse link X 1,321,315 1,379,202 RGD:13702180
RGD:13702282
G Syn2 synapsin II JBrowse link 4 147,037,179 147,195,096 RGD:13702354
RGD:13702180
G Syn3 synapsin III JBrowse link 7 23,403,896 23,808,602 RGD:13702180
RGD:13702156
inner acrosomal membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cd46 CD46 molecule JBrowse link 13 113,786,525 113,818,741 RGD:2293559
G Eqtn equatorin JBrowse link 5 113,852,191 113,881,142 RGD:1600115
RGD:13792537
RGD:1624291
G Tmem190 transmembrane protein 190 JBrowse link 1 72,629,706 72,633,423 RGD:1624291
RGD:13792537
G Trip11 thyroid hormone receptor interactor 11 JBrowse link 6 125,741,520 125,812,926 RGD:8655529
integral component of neuronal dense core vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Slc18a2 solute carrier family 18 member A2 JBrowse link 1 280,397,831 280,457,968 RGD:2317337
G Syt4 synaptotagmin 4 JBrowse link 18 24,172,580 24,181,989 RGD:1624291
G Syt5 synaptotagmin 5 JBrowse link 1 72,859,806 72,867,934 RGD:1624291
integral component of synaptic vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp6v0a1 ATPase H+ transporting V0 subunit a1 JBrowse link 10 88,914,264 88,967,736 RGD:12050113
G Atp6v1g2 ATPase H+ transporting V1 subunit G2 JBrowse link 20 4,821,265 4,824,829 RGD:1624291
G Atp8a1 ATPase phospholipid transporting 8A1 JBrowse link 14 41,972,398 42,210,555 RGD:13702180
G Clcn3 chloride voltage-gated channel 3 JBrowse link 16 32,448,821 32,520,649 RGD:1624291
G Gabra2 gamma-aminobutyric acid type A receptor subunit alpha 2 JBrowse link 14 39,662,411 39,801,082 RGD:1624291
G Lamp1 lysosomal-associated membrane protein 1 JBrowse link 16 81,689,576 81,714,341 RGD:12050113
G Mal2 mal, T-cell differentiation protein 2 JBrowse link 7 94,130,852 94,163,649 RGD:13702398
G Oprd1 opioid receptor, delta 1 JBrowse link 5 150,288,126 150,323,063 RGD:13702250
G Oprk1 opioid receptor, kappa 1 JBrowse link 5 13,742,655 13,760,460 RGD:13702363
G Ptprn2 protein tyrosine phosphatase, receptor type N2 JBrowse link 6 144,384,773 145,133,042 RGD:13702180
G Ptprs protein tyrosine phosphatase, receptor type, S JBrowse link 9 10,585,360 10,646,205 RGD:12790648
G Scamp1 secretory carrier membrane protein 1 JBrowse link 2 23,858,021 23,941,128 RGD:68303
RGD:69975
G Scamp5 secretory carrier membrane protein 5 JBrowse link 8 62,221,820 62,266,269 RGD:68303
G Slc10a4 solute carrier family 10, member 4 JBrowse link 14 37,764,839 37,770,059 RGD:1624291
G Slc17a6 solute carrier family 17 member 6 JBrowse link 1 106,980,463 107,038,717 RGD:9999204
RGD:13792537
G Slc17a7 solute carrier family 17 member 7 JBrowse link 1 101,161,265 101,172,292 RGD:9999204
RGD:13792537
G Slc17a8 solute carrier family 17 member 8 JBrowse link 7 30,215,231 30,274,993 RGD:13792537
RGD:1624291
G Slc18a2 solute carrier family 18 member A2 JBrowse link 1 280,397,831 280,457,968 RGD:13702244
G Slc18a3 solute carrier family 18 member A3 JBrowse link 16 8,682,668 8,685,529 RGD:13702155
RGD:13702308
G Slc30a3 solute carrier family 30 member 3 JBrowse link 6 26,629,752 26,650,106 RGD:1624291
G Slc32a1 solute carrier family 32 member 1 JBrowse link 3 155,102,980 155,107,815 RGD:9999204
RGD:13792537
RGD:13702256
G Slc6a17 solute carrier family 6 member 17 JBrowse link 2 210,249,663 210,299,770 RGD:13702218
G Slc6a7 solute carrier family 6 member 7 JBrowse link 18 56,305,765 56,325,179 RGD:13702417
G Slc6a9 solute carrier family 6 member 9 JBrowse link 5 136,669,674 136,703,702 RGD:13702299
G Stx12 syntaxin 12 JBrowse link 5 151,044,050 151,072,893 RGD:12050113
RGD:13792537
RGD:12050136
G Stx16 syntaxin 16 JBrowse link 3 172,154,739 172,183,699 RGD:12050113
G Stx1a syntaxin 1A JBrowse link 12 24,682,050 24,710,002 RGD:13702228
G Stx6 syntaxin 6 JBrowse link 13 72,804,218 72,850,757 RGD:12050113
RGD:13792537
RGD:12050136
G Stx7 syntaxin 7 JBrowse link 1 22,241,655 22,281,850 RGD:12050113
G Sv2a synaptic vesicle glycoprotein 2a JBrowse link 2 198,321,100 198,336,889 RGD:12050113
RGD:13702180
G Sv2b synaptic vesicle glycoprotein 2b JBrowse link 1 136,664,199 136,842,247 RGD:13702180
G Sv2c synaptic vesicle glycoprotein 2c JBrowse link 2 26,495,757 26,707,691 RGD:13702180
G Syngr1 synaptogyrin 1 JBrowse link 7 121,311,008 121,334,437 RGD:12050113
G Synpr synaptoporin JBrowse link 15 14,558,613 14,885,790 RGD:13702286
G Syp synaptophysin JBrowse link X 15,694,699 15,709,244 RGD:730209
RGD:13702387
RGD:12050136
G Sypl1 synaptophysin-like 1 JBrowse link 6 52,265,920 52,286,037 RGD:12050113
G Syt1 synaptotagmin 1 JBrowse link 7 50,084,063 50,638,996 RGD:12050113
RGD:13702422
G Syt11 synaptotagmin 11 JBrowse link 2 188,112,301 188,138,180 RGD:11079184
G Syt2 synaptotagmin 2 JBrowse link 13 51,569,248 51,577,824 RGD:13702259
G Syt9 synaptotagmin 9 JBrowse link 1 171,592,703 171,769,780 RGD:1624291
G Tmem163 transmembrane protein 163 JBrowse link 13 44,166,306 44,345,735 RGD:8553964
RGD:1624291
G Vamp1 vesicle-associated membrane protein 1 JBrowse link 4 157,726,941 157,733,644 RGD:13702405
G Vamp2 vesicle-associated membrane protein 2 JBrowse link 10 55,675,171 55,679,405 RGD:12050113
G Vamp3 vesicle-associated membrane protein 3 JBrowse link 5 168,126,157 168,136,628 RGD:12050113
G Vamp4 vesicle-associated membrane protein 4 JBrowse link 13 80,460,699 80,483,597 RGD:12050136
G Vamp7 vesicle-associated membrane protein 7 JBrowse link 12 18,996,566 19,033,714 RGD:12050113
RGD:13702238
G Wfs1 wolframin ER transmembrane glycoprotein JBrowse link 14 78,640,707 78,665,224 RGD:12050113
intrinsic component of neuronal dense core vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Syt4 synaptotagmin 4 JBrowse link 18 24,172,580 24,181,989 RGD:14995321
melanosome membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dtnbp1 dystrobrevin binding protein 1 JBrowse link 17 20,090,136 20,182,332 RGD:1600115
G Gpnmb glycoprotein nmb JBrowse link 4 78,694,447 78,715,685 RGD:1600115
G Gpr143 G protein-coupled receptor 143 JBrowse link X 23,668,363 23,693,162 RGD:1624291
RGD:13792537
G Mreg melanoregulin JBrowse link 9 79,490,058 79,559,768 RGD:1624291
G Oca2 OCA2 melanosomal transmembrane protein JBrowse link 1 114,661,970 114,987,433 RGD:1624291
G Rab32 RAB32, member RAS oncogene family JBrowse link 1 4,638,663 4,653,220 RGD:1624291
G Rab38 RAB38, member RAS oncogene family JBrowse link 1 152,072,716 152,153,449 RGD:1624291
G Rab7a RAB7A, member RAS oncogene family JBrowse link 4 119,910,461 119,963,065 RGD:1600115
G Th tyrosine hydroxylase JBrowse link 1 216,073,034 216,080,287 RGD:1624291
G Tyrp1 tyrosinase-related protein 1 JBrowse link 5 98,387,291 98,406,083 RGD:1624291
outer acrosomal membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C4bpa complement component 4 binding protein, alpha JBrowse link 13 47,342,090 47,377,580 RGD:1624291
G Eqtn equatorin JBrowse link 5 113,852,191 113,881,142 RGD:1600115
RGD:13792537
RGD:1624291
G Fam170b family with sequence similarity 170, member B JBrowse link 16 9,074,044 9,076,885 RGD:1624291
G Ift88 intraflagellar transport 88 JBrowse link 15 37,690,417 37,786,855 RGD:8655529
G Tekt3 tektin 3 JBrowse link 10 49,472,520 49,506,473 RGD:1600115
G Trip11 thyroid hormone receptor interactor 11 JBrowse link 6 125,741,520 125,812,926 RGD:8655529
phagocytic vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Anxa3 annexin A3 JBrowse link 14 14,371,921 14,426,503 RGD:1624291
G Coro1a coronin 1A JBrowse link 1 198,123,883 198,128,890 RGD:1600115
G Dmbt1 deleted in malignant brain tumors 1 JBrowse link 1
1
201,620,642
203,149,414
201,689,905
203,228,705
RGD:1624291
G Dnm2 dynamin 2 JBrowse link 8 22,458,869 22,540,649 RGD:1600115
G Irgm immunity-related GTPase M JBrowse link 10 34,213,885 34,221,968 RGD:1600115
G Lamp2 lysosomal-associated membrane protein 2 JBrowse link X 124,722,628 124,766,079 RGD:1624291
G Ocrl OCRL, inositol polyphosphate-5-phosphatase JBrowse link X 134,742,226 134,793,411 RGD:1600115
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing JBrowse link 9 71,911,744 72,005,816 RGD:1624291
G Pip4p1 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1 JBrowse link 15 27,852,152 27,855,999 RGD:1600115
RGD:1624291
G Pip4p2 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 JBrowse link 5 28,395,517 28,442,924 RGD:1600115
RGD:1624291
G Rab10 RAB10, member RAS oncogene family JBrowse link 6 27,668,387 27,721,120 RGD:1600115
G Rab11b RAB11B, member RAS oncogene family JBrowse link 7 18,598,991 18,612,132 RGD:1600115
G Rab11fip1 RAB11 family interacting protein 1 JBrowse link 16 69,048,739 69,079,332 RGD:1600115
G Rab34 RAB34, member RAS oncogene family JBrowse link 10 65,448,111 65,452,178 RGD:1600115
G Rab43 RAB43, member RAS oncogene family JBrowse link 4 119,695,012 119,714,490 RGD:1600115
G Rab5a RAB5A, member RAS oncogene family JBrowse link 9 5,910 6,065 RGD:1600115
G Rab5al1 Rab5a, member RAS oncogene family-like 1 JBrowse link 14 72,889,022 72,891,156 RGD:1600115
G Rab7a RAB7A, member RAS oncogene family JBrowse link 4 119,910,461 119,963,065 RGD:1600115
G Rab8a RAB8A, member RAS oncogene family JBrowse link 16 19,355,047 19,376,776 RGD:1600115
G Rab8b RAB8B, member RAS oncogene family JBrowse link 8 72,641,680 72,714,646 RGD:1600115
G Rab9a RAB9A, member RAS oncogene family JBrowse link X 29,525,256 29,547,295 RGD:1600115
G Rapgef1 Rap guanine nucleotide exchange factor 1 JBrowse link 3 8,189,594 8,307,077 RGD:9835043
G Slc11a1 solute carrier family 11 member 1 JBrowse link 9 81,655,590 81,666,697 RGD:1624291
RGD:13792537
RGD:1600115
G Syt7 synaptotagmin 7 JBrowse link 1 226,435,816 226,498,008 RGD:1600115
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 JBrowse link 1 219,126,687 219,139,466 RGD:1624291
G Vamp7 vesicle-associated membrane protein 7 JBrowse link 12 18,996,566 19,033,714 RGD:1600115
phagolysosome membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hrg histidine-rich glycoprotein JBrowse link 11 81,621,274 81,639,938 RGD:1624291
G Lamp1 lysosomal-associated membrane protein 1 JBrowse link 16 81,689,576 81,714,341 RGD:1624291
platelet alpha granule membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Selp selectin P JBrowse link 13 82,428,914 82,464,629 RGD:1624291
RGD:1600115
G Snca synuclein alpha JBrowse link 4 90,782,412 90,883,236 RGD:1624291
G Sparc secreted protein acidic and cysteine rich JBrowse link 10 40,742,390 40,764,232 RGD:1624291
platelet dense granule membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcc4 ATP binding cassette subfamily C member 4 JBrowse link 15 103,695,415 103,927,980 RGD:1624291
G Itpr1 inositol 1,4,5-trisphosphate receptor, type 1 JBrowse link 4 140,247,297 140,580,749 RGD:1624291
RGD:1600115
G Lamp2 lysosomal-associated membrane protein 2 JBrowse link X 124,722,628 124,766,079 RGD:1624291
secretory granule membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07062512.1 RGD:13792537
G Ca4 carbonic anhydrase 4 JBrowse link 10 72,272,286 72,281,069 RGD:1624291
RGD:1600115
G Cd177 CD177 molecule JBrowse link 1 82,964,683 82,987,306 RGD:1624291
G Cd38 CD38 molecule JBrowse link 14 71,714,768 71,754,990 RGD:13506922
G Cpe carboxypeptidase E JBrowse link 16 26,906,716 27,014,811 RGD:6483330
RGD:1600115
RGD:1624291
G Dbh dopamine beta-hydroxylase JBrowse link 3 5,709,236 5,731,895 RGD:1600115
RGD:13792537
RGD:1624291
G Ica1 islet cell autoantigen 1 JBrowse link 4 34,635,509 34,780,187 RGD:1624291
RGD:1600115
G Itpr1 inositol 1,4,5-trisphosphate receptor, type 1 JBrowse link 4 140,247,297 140,580,749 RGD:1582340
RGD:13792537
G Itpr2 inositol 1,4,5-trisphosphate receptor, type 2 JBrowse link 4 180,423,452 180,800,088 RGD:13792537
G Itpr3 inositol 1,4,5-trisphosphate receptor, type 3 JBrowse link 20 5,645,894 5,711,702 RGD:13792537
G Moxd1 monooxygenase, DBH-like 1 JBrowse link 1 22,124,498 22,206,565 RGD:13792537
G Moxd2 monooxygenase, DBH-like 2 JBrowse link 4 69,117,477 69,125,972 RGD:13792537
G Msn moesin JBrowse link X 65,226,834 65,294,192 RGD:727296
G Myrip myosin VIIA and Rab interacting protein JBrowse link 8 128,972,307 129,139,257 RGD:4892230
G Pam peptidylglycine alpha-amidating monooxygenase JBrowse link 9 111,028,543 111,177,588 RGD:6483559
G Ptprn2 protein tyrosine phosphatase, receptor type N2 JBrowse link 6 144,384,773 145,133,042 RGD:1624291
RGD:1600115
G Rab26 RAB26, member RAS oncogene family JBrowse link 10 13,894,271 13,898,578 RGD:1624291
RGD:1600115
G Rab27a RAB27A, member RAS oncogene family JBrowse link 8 79,722,334 79,776,228 RGD:1601610
G Rab27b RAB27B, member RAS oncogene family JBrowse link 18 68,486,006 68,644,595 RGD:1601610
G Rph3al rabphilin 3A-like (without C2 domains) JBrowse link 10 63,989,556 64,140,584 RGD:1601610
G Scg3 secretogranin III JBrowse link 8 82,582,352 82,641,536 RGD:1600115
RGD:13792537
RGD:1624291
G Sycn syncollin JBrowse link 1 85,219,827 85,220,239 RGD:634177
RGD:13792537
G Syt4 synaptotagmin 4 JBrowse link 18 24,172,580 24,181,989 RGD:11535113
G Syt9 synaptotagmin 9 JBrowse link 1 171,592,703 171,769,780 RGD:2311147
G Sytl4 synaptotagmin-like 4 JBrowse link X 104,763,961 104,814,152 RGD:4892230
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 JBrowse link 1 219,126,687 219,139,466 RGD:1624291
G Tmed10 transmembrane p24 trafficking protein 10 JBrowse link 6 109,169,739 109,205,004 RGD:1624291
RGD:1600115
G Tmem184a transmembrane protein 184A JBrowse link 12 16,906,863 16,924,143 RGD:1624291
RGD:1600115
G Vamp2 vesicle-associated membrane protein 2 JBrowse link 10 55,675,171 55,679,405 RGD:1624291
G Vamp7 vesicle-associated membrane protein 7 JBrowse link 12 18,996,566 19,033,714 RGD:1624291
G Vamp8 vesicle-associated membrane protein 8 JBrowse link 4 100,250,301 100,252,756 RGD:1624291
G Vgf VGF nerve growth factor inducible JBrowse link 12 22,677,302 22,680,630 RGD:2289058
specific granule membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Vamp1 vesicle-associated membrane protein 1 JBrowse link 4 157,726,941 157,733,644 RGD:1624291
synaptic vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcc8 ATP binding cassette subfamily C member 8 JBrowse link 1 102,110,708 102,191,287 RGD:1549870
G Bcl2l1 Bcl2-like 1 JBrowse link 3 148,259,594 148,314,191 RGD:12793033
G Borcs5 BLOC-1 related complex subunit 5 JBrowse link 4 168,396,034 168,466,968 RGD:13792537
G Bsn bassoon (presynaptic cytomatrix protein) JBrowse link 8 116,873,721 116,965,396 RGD:1600115
G Calm1 calmodulin 1 JBrowse link 6 124,217,241 124,225,292 RGD:12793033
G Calm2 calmodulin 2 JBrowse link 6 11,067,675 11,080,078 RGD:12793033
G Calm3 calmodulin 3 JBrowse link 1 78,844,520 78,851,628 RGD:12793033
G Clta clathrin, light chain A JBrowse link 5 59,490,689 59,509,139 RGD:12793033
RGD:13792537
RGD:13702292
G Cltb clathrin, light chain B JBrowse link 17 10,537,348 10,554,999 RGD:13702292
RGD:13792537
G Dlg2 discs large MAGUK scaffold protein 2 JBrowse link 1 154,916,274 157,274,077 RGD:1624291
G Dmd dystrophin JBrowse link X 51,149,358 53,519,271 RGD:12880362
G Dnm1l dynamin 1-like JBrowse link 11 88,830,968 88,882,271 RGD:12793033
G Drd2 dopamine receptor D2 JBrowse link 8 53,678,777 53,743,643 RGD:2311574
G Dtnbp1 dystrobrevin binding protein 1 JBrowse link 17 20,090,136 20,182,332 RGD:8554107
RGD:1624291
RGD:13792537
RGD:1600115
G Gad2 glutamate decarboxylase 2 JBrowse link 17 89,171,576 89,234,770 RGD:1625237
G Gria1 glutamate ionotropic receptor AMPA type subunit 1 JBrowse link 10 42,441,723 42,760,200 RGD:1624291
G Gria2 glutamate ionotropic receptor AMPA type subunit 2 JBrowse link 2 179,584,302 179,704,629 RGD:728773
RGD:1624291
G Grin1 glutamate ionotropic receptor NMDA type subunit 1 JBrowse link 3 2,507,745 2,534,664 RGD:1624291
G Ica1 islet cell autoantigen 1 JBrowse link 4 34,635,509 34,780,187 RGD:1600115
RGD:1624291
G Lamp5 lysosomal-associated membrane protein family, member 5 JBrowse link 3 129,012,677 129,031,522 RGD:1600115
G LOC102556337 mitochondrial fission factor-like JBrowse link 9 90,880,586 90,908,848 RGD:12793033
G Mctp1 multiple C2 and transmembrane domain containing 1 JBrowse link 2 3,400,883 4,089,949 RGD:13210552
RGD:13792537
G Mctp2 multiple C2 and transmembrane domain containing 2 JBrowse link 1 133,324,881 133,559,644 RGD:13792537
G Mff mitochondrial fission factor JBrowse link 9 88,490,280 88,518,517 RGD:12793033
G Otof otoferlin JBrowse link 6 27,328,343 27,424,864 RGD:1624291
RGD:13792537
RGD:1600115
G Pi4k2a phosphatidylinositol 4-kinase type 2 alpha JBrowse link 1 261,337,594 261,362,509 RGD:2306405
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 1 48,880,015 50,069,998 RGD:10413884
G Prrt1 proline-rich transmembrane protein 1 JBrowse link 20 4,392,605 4,396,271 RGD:1624291
G Prrt2 proline-rich transmembrane protein 2 JBrowse link 1 198,451,042 198,454,998 RGD:1600115
G Ptprn2 protein tyrosine phosphatase, receptor type N2 JBrowse link 6 144,384,773 145,133,042 RGD:1624291
RGD:1600115
G RGD621098 similar to RIKEN cDNA D230025D16Rik JBrowse link 19 37,179,850 37,207,714 RGD:1302287
RGD:13792537
G Rph3a rabphilin 3A JBrowse link 12 41,073,296 41,149,799 RGD:729719
G Scamp1 secretory carrier membrane protein 1 JBrowse link 2 23,858,021 23,941,128 RGD:1624291
RGD:1600115
G Sema4c semaphorin 4C JBrowse link 9 43,129,413 43,140,442 RGD:1624291
G Septin8 septin 8 JBrowse link 10 38,877,422 38,906,480 RGD:1600115
G Sh3gl2 SH3 domain containing GRB2 like 2, endophilin A1 JBrowse link 5 103,479,767 103,654,507 RGD:10047209
G Slc17a6 solute carrier family 17 member 6 JBrowse link 1 106,980,463 107,038,717 RGD:13792537
G Slc17a7 solute carrier family 17 member 7 JBrowse link 1 101,161,265 101,172,292 RGD:1624291
RGD:13792537
RGD:9999204
G Slc17a8 solute carrier family 17 member 8 JBrowse link 7 30,215,231 30,274,993 RGD:1624291
RGD:13792537
G Slc18a1 solute carrier family 18 member A1 JBrowse link 16 22,358,646 22,395,183 RGD:13792537
G Slc18a2 solute carrier family 18 member A2 JBrowse link 1 280,397,831 280,457,968 RGD:5130996
RGD:13792537
G Slc2a3 solute carrier family 2 member 3 JBrowse link 4 155,549,991 155,626,018 RGD:1642814
G Slc30a3 solute carrier family 30 member 3 JBrowse link 6 26,629,752 26,650,106 RGD:1624291
G Slc9b2 solute carrier family 9 member B2 JBrowse link 2 240,485,254 240,519,166 RGD:1624291
RGD:1600115
G Snap47 synaptosome associated protein 47 JBrowse link 10 45,757,196 45,798,734 RGD:1624291
G Snapin SNAP-associated protein JBrowse link 2 189,878,159 189,880,743 RGD:1600115
G Snca synuclein alpha JBrowse link 4 90,782,412 90,883,236 RGD:1624291
G Stx1a syntaxin 1A JBrowse link 12 24,682,050 24,710,002 RGD:1624291
RGD:1549870
G Sv2a synaptic vesicle glycoprotein 2a JBrowse link 2 198,321,100 198,336,889 RGD:634182
RGD:13792537
G Sv2b synaptic vesicle glycoprotein 2b JBrowse link 1 136,664,199 136,842,247 RGD:13792537
G Sv2c synaptic vesicle glycoprotein 2c JBrowse link 2 26,495,757 26,707,691 RGD:13792537
G Svop SV2 related protein JBrowse link 12 48,292,272 48,351,974 RGD:1600115
G Syn1 synapsin I JBrowse link X 1,321,315 1,379,202 RGD:1624291
RGD:13792537
G Syn2 synapsin II JBrowse link 4 147,037,179 147,195,096 RGD:1624291
RGD:13792537
RGD:1600115
G Syn3 synapsin III JBrowse link 7 23,403,896 23,808,602 RGD:1624291
RGD:13792537
RGD:1600115
G Syndig1 synapse differentiation inducing 1 JBrowse link 3 145,031,427 145,199,273 RGD:1624291
G Syngr1 synaptogyrin 1 JBrowse link 7 121,311,008 121,334,437 RGD:70030
RGD:13792537
G Syngr2 synaptogyrin 2 JBrowse link 10 106,812,740 106,816,675 RGD:8554439
RGD:13792537
G Syngr3 synaptogyrin 3 JBrowse link 10 14,051,413 14,056,169 RGD:13792537
G Syngr4 synaptogyrin 4 JBrowse link 1 101,872,541 101,883,897 RGD:13792537
G Synpr synaptoporin JBrowse link 15 14,558,613 14,885,790 RGD:1302376
RGD:13792537
G Syp synaptophysin JBrowse link X 15,694,699 15,709,244 RGD:1600115
RGD:1624291
RGD:13792537
RGD:12793033
G Sypl1 synaptophysin-like 1 JBrowse link 6 52,265,920 52,286,037 RGD:13792537
G Sypl2 synaptophysin-like 2 JBrowse link 2 211,003,046 211,017,778 RGD:13792537
G Syt1 synaptotagmin 1 JBrowse link 7 50,084,063 50,638,996 RGD:729959
RGD:13792537
RGD:12793033
RGD:1624291
G Syt12 synaptotagmin 12 JBrowse link 1 219,690,013 219,719,359 RGD:1600115
G Syt2 synaptotagmin 2 JBrowse link 13 51,569,248 51,577,824 RGD:729949
RGD:13792537
G Syt5 synaptotagmin 5 JBrowse link 1 72,859,806 72,867,934 RGD:13792537
G Syt6 synaptotagmin 6 JBrowse link 2 206,064,181 206,119,034 RGD:1600115
G Syt7 synaptotagmin 7 JBrowse link 1 226,435,816 226,498,008 RGD:1600115
G Syt8 synaptotagmin 8 JBrowse link 1 215,605,408 215,607,602 RGD:13792537
G Tprg1l tumor protein p63 regulated 1-like JBrowse link 5 171,456,299 171,459,488 RGD:1600115
G Trpm7 transient receptor potential cation channel, subfamily M, member 7 JBrowse link 3 119,258,189 119,347,084 RGD:5684965
G Unc13a unc-13 homolog A JBrowse link 16 20,056,398 20,103,951 RGD:13792537
G Unc13b unc-13 homolog B JBrowse link 5 58,505,449 58,714,396 RGD:13792537
G Unc13c unc-13 homolog C JBrowse link 8 80,202,736 80,656,363 RGD:11535093
RGD:13792537
G Vamp2 vesicle-associated membrane protein 2 JBrowse link 10 55,675,171 55,679,405 RGD:634537
RGD:1624291
RGD:12793033
G Vti1a vesicle transport through interaction with t-SNAREs 1A JBrowse link 1 276,310,072 276,508,635 RGD:1600115
tertiary granule membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cd177 CD177 molecule JBrowse link 1 82,964,683 82,987,306 RGD:1624291
G Slc11a1 solute carrier family 11 member 1 JBrowse link 9 81,655,590 81,666,697 RGD:1624291
RGD:1600115
G Vamp1 vesicle-associated membrane protein 1 JBrowse link 4 157,726,941 157,733,644 RGD:1624291
trans-Golgi network transport vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nrgn neurogranin JBrowse link 8 40,015,049 40,023,193 RGD:9835422
G Rassf9 Ras association domain family member 9 JBrowse link 7 44,146,345 44,178,179 RGD:633607
RGD:13792537
RGD:1624291
RGD:1600115
transport vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aqp6 aquaporin 6 JBrowse link 7 141,258,585 141,261,518 RGD:1600115
G Ca4 carbonic anhydrase 4 JBrowse link 10 72,272,286 72,281,069 RGD:1624291
RGD:1600115
G Cpe carboxypeptidase E JBrowse link 16 26,906,716 27,014,811 RGD:1600115
G Cuzd1 CUB and zona pellucida-like domains 1 JBrowse link 1 201,881,846 201,894,970 RGD:1600115
G Dbh dopamine beta-hydroxylase JBrowse link 3 5,709,236 5,731,895 RGD:1600115
G Dmbt1 deleted in malignant brain tumors 1 JBrowse link 1
1
201,620,642
203,149,414
201,689,905
203,228,705
RGD:1600115
G Fgfrl1 fibroblast growth factor receptor-like 1 JBrowse link 14 2,020,110 2,032,169 RGD:1600115
G Itpr1 inositol 1,4,5-trisphosphate receptor, type 1 JBrowse link 4 140,247,297 140,580,749 RGD:1600115
G Map6 microtubule-associated protein 6 JBrowse link 1 164,225,776 164,292,094 RGD:1600115
G Pam peptidylglycine alpha-amidating monooxygenase JBrowse link 9 111,028,543 111,177,588 RGD:1600115
G Ptprn protein tyrosine phosphatase, receptor type, N JBrowse link 9 82,446,626 82,462,314 RGD:1600115
G Rph3al rabphilin 3A-like (without C2 domains) JBrowse link 10 63,989,556 64,140,584 RGD:1600115
G Scg3 secretogranin III JBrowse link 8 82,582,352 82,641,536 RGD:1600115
G Scgn secretagogin, EF-hand calcium binding protein JBrowse link 17 43,357,888 43,399,321 RGD:1600115
G Slc30a8 solute carrier family 30 member 8 JBrowse link 7 91,832,988 91,869,329 RGD:1600115
G Sorl1 sortilin related receptor 1 JBrowse link 8 46,228,077 46,287,171 RGD:1600115
G Spred2 sprouty-related, EVH1 domain containing 2 JBrowse link 14 104,268,362 104,290,206 RGD:1600115
G Sycn syncollin JBrowse link 1 85,219,827 85,220,239 RGD:1600115
G Syt10 synaptotagmin 10 JBrowse link 7 130,769,039 130,827,030 RGD:1600115
G Syt3 synaptotagmin 3 JBrowse link 1 100,379,236 100,407,862 RGD:1600115
G Sytl4 synaptotagmin-like 4 JBrowse link X 104,763,961 104,814,152 RGD:1600115
G Tmed10 transmembrane p24 trafficking protein 10 JBrowse link 6 109,169,739 109,205,004 RGD:1600115
G Tmem184a transmembrane protein 184A JBrowse link 12 16,906,863 16,924,143 RGD:1600115
G Tmem30a transmembrane protein 30A JBrowse link 8 87,222,107 87,245,953 RGD:1600115
vesicle coat term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sec31a SEC31 homolog A, COPII coat complex component JBrowse link 14 10,854,713 10,909,579 RGD:1624291
G Sec31b SEC31 homolog B, COPII coat complex component JBrowse link 1 264,266,279 264,294,687 RGD:1624291
zymogen granule membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clca1 chloride channel accessory 1 JBrowse link 2 250,897,980 250,923,711 RGD:4188872
G Cuzd1 CUB and zona pellucida-like domains 1 JBrowse link 1 201,881,846 201,894,970 RGD:1624291
RGD:1600115
G Dmbt1 deleted in malignant brain tumors 1 JBrowse link 1
1
201,620,642
203,149,414
201,689,905
203,228,705
RGD:1624291
RGD:1600115
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 JBrowse link 1 216,293,087 216,630,339 RGD:2317969
G Pnliprp2 pancreatic lipase related protein 2 JBrowse link 1 279,896,973 279,927,600 RGD:633718
G Rab27b RAB27B, member RAS oncogene family JBrowse link 18 68,486,006 68,644,595 RGD:1303344
G Rab5a RAB5A, member RAS oncogene family JBrowse link 9 5,910 6,065 RGD:2306267
G Scamp1 secretory carrier membrane protein 1 JBrowse link 2 23,858,021 23,941,128 RGD:1624291
RGD:1600115
G Stx3 syntaxin 3 JBrowse link 1 228,137,781 228,195,004 RGD:1624291
G Stxbp2 syntaxin binding protein 2 JBrowse link 12 2,180,101 2,191,863 RGD:1624291
RGD:1600115
G Tmed10 transmembrane p24 trafficking protein 10 JBrowse link 6 109,169,739 109,205,004 RGD:68840
RGD:1624291
RGD:2317246
G Tmed2 transmembrane p24 trafficking protein 2 JBrowse link 12 37,471,259 37,480,344 RGD:68840
G Vamp2 vesicle-associated membrane protein 2 JBrowse link 10 55,675,171 55,679,405 RGD:1624291
G Zg16 zymogen granule protein 16 JBrowse link 1 198,483,800 198,486,157 RGD:727222

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20118
    intracellular 14088
      cytoplasm 10968
        cytoplasmic vesicle 1860
          cytoplasmic vesicle membrane 417
            Cvt vesicle membrane 0
            STING complex 0
            aleurone grain membrane 0
            chitosome membrane 0
            coated vesicle membrane + 93
            endocytic vesicle membrane + 47
            esterosome membrane 0
            melanosome membrane 10
            merozoite dense granule membrane 0
            organellar chromatophore membrane + 0
            phagolysosome vesicle membrane 0
            rod photoreceptor disc membrane 0
            secretory granule membrane + 91
            transport vesicle membrane + 193
Path 2
Term Annotations click to browse term
  cellular_component 20118
    cellular anatomical entity 19774
      organelle 12828
        membrane-bounded organelle 11124
          vesicle 2024
            intracellular vesicle 1866
              cytoplasmic vesicle 1860
                cytoplasmic vesicle membrane 417
                  Cvt vesicle membrane 0
                  STING complex 0
                  aleurone grain membrane 0
                  chitosome membrane 0
                  coated vesicle membrane + 93
                  endocytic vesicle membrane + 47
                  esterosome membrane 0
                  melanosome membrane 10
                  merozoite dense granule membrane 0
                  organellar chromatophore membrane + 0
                  phagolysosome vesicle membrane 0
                  rod photoreceptor disc membrane 0
                  secretory granule membrane + 91
                  transport vesicle membrane + 193
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.