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ONTOLOGY REPORT - ANNOTATIONS


Term:nuclear body organization
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Accession:GO:0030575 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of any of the extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins.
Synonyms:exact_synonym: nuclear body organisation
 related_synonym: nuclear body organization and biogenesis



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nuclear body organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf3 CUGBP, Elav-like family member 3 acts_upstream_of_or_within ISO (MGI:5755769|PMID:25145264) RGD PMID:25145264 MGI:5755769 NCBI chr 2:182,116,034...182,130,163
Ensembl chr 2:182,116,073...182,130,163
JBrowse link
G Sf1 splicing factor 1 acts_upstream_of_or_within ISO (MGI:5755769|PMID:25145264) RGD PMID:25145264 MGI:5755769 NCBI chr 1:203,670,016...203,683,432
Ensembl chr 1:203,670,018...203,684,330
JBrowse link
Cajal body organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fam118b family with sequence similarity 118, member B involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:33,566,681...33,617,310
Ensembl chr 8:33,566,669...33,617,270
JBrowse link
G Uspl1 ubiquitin specific peptidase like 1 involved_in ISO
IBA
(PMID:22878415)
PMID:21873635
RGD PMID:22878415 PMID:21873635 RGD:13792537 NCBI chr12:5,823,460...5,850,470
Ensembl chr12:5,823,359...5,850,366
JBrowse link
G Wrap53 WD repeat containing, antisense to TP53 involved_in ISO
IBA
ISS
(PMID:21072240)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:21072240 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:54,282,092...54,299,908
Ensembl chr10:54,282,105...54,298,929
JBrowse link
G Zpr1 ZPR1 zinc finger involved_in ISO
IBA
(PMID:17068332)
(MGI:3575865|PMID:15767679)
PMID:21873635
RGD PMID:15767679 PMID:17068332 PMID:21873635 MGI:3575865, RGD:13792537 NCBI chr 8:46,564,898...46,574,719
Ensembl chr 8:46,565,146...46,574,719
JBrowse link
nuclear speck organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aff2 AF4/FMR2 family, member 2 acts_upstream_of_or_within ISO (PMID:23562910) RGD PMID:23562910 NCBI chr  X:147,928,130...148,432,484
Ensembl chr  X:147,928,407...148,429,995
JBrowse link
G Dyrk3 dual specificity tyrosine phosphorylation regulated kinase 3 involved_in ISO
ISS
IEA
(PMID:29973724)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:29973724 GO_REF:0000024 GO_REF:0000107 NCBI chr13:42,594,120...42,604,898
Ensembl chr13:42,594,121...42,604,778
JBrowse link
G Srpk2 SRSF protein kinase 2 involved_in ISO (MGI:1195449|PMID:9446799) RGD PMID:9446799 MGI:1195449 NCBI chr 4:11,464,684...11,655,993
Ensembl chr 4:11,464,674...11,655,990
JBrowse link
G Usp50 ubiquitin specific peptidase 50 acts_upstream_of_or_within ISO (PMID:28094437) RGD PMID:28094437 NCBI chr 3:114,012,104...114,035,468
Ensembl chr 3:114,011,702...114,035,476
JBrowse link
PML body organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Daxx death-domain associated protein IMP RGD PMID:17289031 RGD:9587773 NCBI chr20:4,970,090...4,976,145
Ensembl chr20:4,970,092...4,975,843
JBrowse link
G Ets1 ETS proto-oncogene 1, transcription factor involved_in ISO (PMID:11909962), (PMID:15247905) RGD PMID:11909962 PMID:15247905 NCBI chr 8:31,045,909...31,168,010
Ensembl chr 8:31,045,945...31,168,010
JBrowse link
G Habp4 hyaluronan binding protein 4 involved_in ISO
ISS
(PMID:28695742)
GO_REF:0000024
RGD
UniProt
PMID:28695742 GO_REF:0000024 NCBI chr17:934,931...957,604
Ensembl chr17:935,654...957,565
JBrowse link
G Pml PML nuclear body scaffold involved_in
acts_upstream_of_or_within
ISO
IMP
IBA
(PMID:17081985)
(MGI:2449749|PMID:12529400)
PMID:21873635
(PMID:8643677)
(PMID:10779416)
RGD PMID:8643677 PMID:10779416 PMID:12529400 PMID:17081985 PMID:17289031 More... MGI:2449749, RGD:9587773, RGD:13792537 NCBI chr 8:58,627,347...58,661,927
Ensembl chr 8:58,628,837...58,658,971
JBrowse link
G Serbp1 Serpine1 mRNA binding protein 1 involved_in ISO
ISS
(PMID:28695742)
GO_REF:0000024
RGD
UniProt
PMID:28695742 GO_REF:0000024 NCBI chr 4:96,401,587...96,421,816
Ensembl chr 4:96,401,477...96,421,813
JBrowse link
G Sumo1 small ubiquitin-like modifier 1 acts_upstream_of_or_within ISO MGI:3819343 (MGI:3819151|PMID:19033381) RGD PMID:19033381 MGI:3819151 NCBI chr 9:61,078,790...61,108,697
Ensembl chr 9:61,077,435...61,108,761
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18737
    cellular process 17432
      cellular component organization or biogenesis 6534
        cellular component organization 6309
          organelle organization 3900
            nucleus organization 145
              nuclear body organization 16
                Cajal body organization 4
                Lands organization 0
                PML body organization 6
                nuclear dicing body assembly 0
                nuclear speck organization 4
paths to the root