Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:nuclear body organization
go back to main search page
Accession:GO:0030575 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of any of the extra-nucleolar nuclear domains usually visualized by confocal microscopy and fluorescent antibodies to specific proteins.
Synonyms:exact_synonym: nuclear body organisation
 related_synonym: nuclear body organization and biogenesis


show annotations for term's descendants           Sort by:
 
nuclear body organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf3 CUGBP, Elav-like family member 3 acts_upstream_of_or_within ISO (MGI:5755769|PMID:25145264) RGD PMID:25145264 MGI:5755769 NCBI chr 2:195,716,373...195,732,872
Ensembl chr 2:195,719,543...195,730,274
JBrowse link
G Sf1 splicing factor 1 acts_upstream_of_or_within ISO (MGI:5755769|PMID:25145264) RGD PMID:25145264 MGI:5755769 NCBI chr 1:221,735,512...221,749,216
Ensembl chr 1:221,735,517...221,749,086
JBrowse link
Cajal body organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fam118b family with sequence similarity 118, member B involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:36,416,769...36,467,609
Ensembl chr 8:36,416,997...36,467,627
JBrowse link
G Uspl1 ubiquitin specific peptidase like 1 involved_in ISO
IBA
(PMID:22878415)
PMID:21873635
RGD PMID:22878415, PMID:21873635 RGD:13792537 NCBI chr12:6,930,018...6,957,027
Ensembl chr12:6,929,978...6,956,984
JBrowse link
G Wrap53 WD repeat containing, antisense to TP53 involved_in ISO
IBA
ISS
(PMID:21072240)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:21072240, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:56,169,024...56,185,800
Ensembl chr10:56,169,025...56,185,857
JBrowse link
G Zpr1 ZPR1 zinc finger involved_in ISO
IBA
(PMID:17068332)
(MGI:3575865|PMID:15767679)
PMID:21873635
RGD PMID:15767679 PMID:17068332, PMID:21873635 MGI:3575865, RGD:13792537 NCBI chr 8:50,563,047...50,572,621
Ensembl chr 8:50,563,047...50,572,621
JBrowse link
nuclear speck organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aff2 AF4/FMR2 family, member 2 involved_in ISO (PMID:23562910) RGD PMID:23562910 NCBI chr  X:153,539,951...154,051,022
Ensembl chr  X:153,539,668...154,051,181
JBrowse link
G Dyrk3 dual specificity tyrosine phosphorylation regulated kinase 3 involved_in ISO
IEA
ISS
(PMID:29973724)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:29973724 GO_REF:0000024 GO_REF:0000107 NCBI chr13:47,906,230...47,916,877
Ensembl chr13:47,906,231...47,916,877
JBrowse link
G Srpk2 SRSF protein kinase 2 involved_in ISO (MGI:1195449|PMID:9446799) RGD PMID:9446799 MGI:1195449 NCBI chr 4:7,994,025...8,187,455
Ensembl chr 4:8,066,737...8,185,935
JBrowse link
G Usp50 ubiquitin specific peptidase 50 involved_in ISO (PMID:28094437) RGD PMID:28094437 NCBI chr 3:119,225,055...119,247,442
Ensembl chr 3:119,224,943...119,247,449
JBrowse link
PML body organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Daxx death-domain associated protein IMP RGD PMID:17289031 RGD:9587773 NCBI chr20:5,480,103...5,485,962
Ensembl chr20:5,480,103...5,485,926
JBrowse link
G Ets1 ETS proto-oncogene 1, transcription factor involved_in ISO (PMID:11909962), (PMID:15247905) RGD PMID:11909962 PMID:15247905 NCBI chr 8:33,756,634...33,879,625
Ensembl chr 8:33,816,386...33,879,625
JBrowse link
G Habp4 hyaluronan binding protein 4 involved_in ISO
ISS
(PMID:28695742)
GO_REF:0000024
RGD
UniProt
PMID:28695742 GO_REF:0000024 NCBI chr17:1,679,561...1,702,245
Ensembl chr17:1,679,627...1,701,623
JBrowse link
G Pml PML nuclear body scaffold involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:17081985)
(MGI:2449749|PMID:12529400)
PMID:21873635
(PMID:8643677)
(PMID:10779416)
RGD PMID:8643677 PMID:10779416 PMID:12529400 PMID:17081985, PMID:21873635 MGI:2449749, RGD:13792537 NCBI chr 8:63,002,515...63,034,310
Ensembl chr 8:63,004,870...63,034,226
JBrowse link
G Serbp1 Serpine1 mRNA binding protein 1 involved_in ISO
ISS
(PMID:28695742)
GO_REF:0000024
RGD
UniProt
PMID:28695742 GO_REF:0000024 NCBI chr 4:98,027,563...98,044,717
Ensembl chr 4:98,027,554...98,044,566
JBrowse link
G Sumo1 small ubiquitin-like modifier 1 acts_upstream_of_or_within ISO MGI:3819343 (MGI:3819151|PMID:19033381) RGD PMID:19033381 MGI:3819151 NCBI chr 9:66,453,428...66,483,614
Ensembl chr 9:66,453,438...66,483,614
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19634
    cellular process 18481
      cellular component organization or biogenesis 6713
        cellular component organization 6470
          organelle organization 4057
            nucleus organization 127
              nuclear body organization 16
                Cajal body organization 4
                Lands organization 0
                PML body organization 6
                nuclear dicing body assembly 0
                nuclear speck organization 4
paths to the root