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ONTOLOGY REPORT - ANNOTATIONS

Term:maturation of SSU-rRNA
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Accession:GO:0030490 term browser browse the term
Definition:Any process involved in the maturation of a precursor Small SubUnit (SSU) ribosomal RNA (rRNA) molecule into a mature SSU-rRNA molecule.
Synonyms:exact_synonym: SSU-rRNA maturation
 narrow_synonym: processing of 20S pre-rRNA


show annotations for term's descendants           Sort by:
maturation of SSU-rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX52 DExD-box helicase 52 involved_in IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr12:39,072,310...39,095,558
Ensembl chr12:39,072,314...39,143,685 		JBrowse link
G LOC100155098 NHP2-like protein 1 pseudogene involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:76,457,649...76,458,203 JBrowse link
G NOB1 NIN1 (RPN12) binding protein 1 homolog involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:17,233,863...17,245,451
Ensembl chr 6:17,233,858...17,245,451 		JBrowse link
G NOL11 nucleolar protein 11 involved_in IEA
IBA		 InterPro
GO_Central
Ensembl		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr12:14,035,649...14,058,421
Ensembl chr12:14,035,689...14,058,414 		JBrowse link
G NOL7 nucleolar protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:9,969,483...9,978,117
Ensembl chr 7:9,971,209...9,983,827 		JBrowse link
G NOP14 NOP14 nucleolar protein involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:1,717,019...1,737,971
Ensembl chr 8:1,716,826...1,737,902 		JBrowse link
G PITPNC1 phosphatidylinositol transfer protein cytoplasmic 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr12:13,741,195...14,019,694
Ensembl chr12:13,741,222...14,019,689 		JBrowse link
G RIOK1 RIO kinase 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:4,750,766...4,776,678
Ensembl chr 7:4,750,752...4,782,448 		JBrowse link
G RIOK2 RIO kinase 2 involved_in ISO (PMID:19564402) UniProt PMID:19564402 NCBI chr 2:103,802,044...103,823,566 JBrowse link
G RIOK3 RIO kinase 3 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:108,338,986...108,363,872
Ensembl chr 6:108,339,013...108,363,868 		JBrowse link
G RPS19 ribosomal protein S19 involved_in ISO (PMID:16990592), (PMID:17053056) UniProt PMID:16990592 PMID:17053056 NCBI chr 6:50,003,198...50,010,135
Ensembl chr 6:50,000,948...50,010,341 		JBrowse link
G RPS28 ribosomal protein S28 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:70,953,706...70,954,862
Ensembl chr 2:70,953,708...70,954,775 		JBrowse link
G SNU13 small nuclear ribonucleoprotein 13 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:6,891,014...6,900,026
Ensembl chr 5:6,885,067...6,900,022 		JBrowse link
G TSR3 TSR3 ribosome maturation factor involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:40,534,222...40,536,773
Ensembl chr 3:40,534,222...40,536,766 		JBrowse link
G UTP4 UTP4 small subunit processome component involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:17,784,908...17,818,417
Ensembl chr 6:17,778,556...17,818,132 		JBrowse link
G WDR3 WD repeat domain 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:102,841,459...102,878,636
Ensembl chr 4:102,827,190...102,878,585 		JBrowse link
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABT1 activator of basal transcription 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:21,024,641...21,027,815
Ensembl chr 7:21,024,635...21,027,794 		JBrowse link
G FCF1 FCF1 rRNA-processing protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25190460) Ensembl
MGI		 PMID:25190460 GO_REF:0000107 NCBI chr 7:97,940,919...97,961,268
Ensembl chr 7:97,940,954...97,958,624 		JBrowse link
G NOP9 NOP9 nucleolar protein involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:74,985,748...74,992,108
Ensembl chr 7:74,985,753...74,992,946 		JBrowse link
G RCL1 RNA terminal phosphate cyclase like 1 acts_upstream_of_or_within ISO (PMID:25190460) MGI PMID:25190460 NCBI chr 1:217,142,965...217,204,960
Ensembl chr 1:217,142,966...217,204,965 		JBrowse link
G TBL3 transducin beta like 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:39,989,739...39,996,138
Ensembl chr 3:39,989,740...39,995,123 		JBrowse link
G UTP23 UTP23 small subunit processome component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25190460) Ensembl
MGI		 PMID:25190460 GO_REF:0000107 NCBI chr 4:21,934,796...21,940,994
Ensembl chr 4:21,934,434...21,940,952 		JBrowse link
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABT1 activator of basal transcription 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:21,024,641...21,027,815
Ensembl chr 7:21,024,635...21,027,794 		JBrowse link
G FCF1 FCF1 rRNA-processing protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25190460) Ensembl
MGI		 PMID:25190460 GO_REF:0000107 NCBI chr 7:97,940,919...97,961,268
Ensembl chr 7:97,940,954...97,958,624 		JBrowse link
G KRI1 KRI1 homolog involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:69,328,182...69,337,104
Ensembl chr 2:69,328,198...69,337,108 		JBrowse link
G LOC100518848 40S ribosomal protein S21 involved_in IBA GO_Central GO_REF:0000033 Ensembl chr17:61,763,574...61,764,832 JBrowse link
G NOP9 NOP9 nucleolar protein involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:74,985,748...74,992,108
Ensembl chr 7:74,985,753...74,992,946 		JBrowse link
G RCL1 RNA terminal phosphate cyclase like 1 acts_upstream_of_or_within ISO (PMID:25190460) MGI PMID:25190460 NCBI chr 1:217,142,965...217,204,960
Ensembl chr 1:217,142,966...217,204,965 		JBrowse link
G RPP40 ribonuclease P/MRP subunit p40 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:2,990,405...3,042,423
Ensembl chr 7:2,987,271...3,005,271 		JBrowse link
G RPS21 ribosomal protein S21 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:61,763,606...61,764,823
Ensembl chr17:61,763,574...61,764,832 		JBrowse link
G RRS1 ribosome biogenesis regulator 1 homolog involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:68,285,803...68,288,213
Ensembl chr 4:68,285,803...68,288,195 		JBrowse link
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100518848 40S ribosomal protein S21 involved_in IBA GO_Central GO_REF:0000033 Ensembl chr17:61,763,574...61,764,832 JBrowse link
G RPS21 ribosomal protein S21 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:61,763,606...61,764,823
Ensembl chr17:61,763,574...61,764,832 		JBrowse link
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABT1 activator of basal transcription 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:21,024,641...21,027,815
Ensembl chr 7:21,024,635...21,027,794 		JBrowse link
G NOP9 NOP9 nucleolar protein involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:74,985,748...74,992,108
Ensembl chr 7:74,985,753...74,992,946 		JBrowse link
G TBL3 transducin beta like 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:39,989,739...39,996,138
Ensembl chr 3:39,989,740...39,995,123 		JBrowse link
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BYSL bystin like involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17242206) Ensembl
MGI		 PMID:17242206 GO_REF:0000107 NCBI chr 7:37,074,517...37,086,753
Ensembl chr 7:37,074,515...37,088,533 		JBrowse link
G COPRS coordinator of PRMT5 and differentiation stimulator involved_in IEA InterPro GO_REF:0000002 NCBI chr12:43,091,181...43,097,998
Ensembl chr12:43,091,176...43,097,994 		JBrowse link
G DCAF13 DDB1 and CUL4 associated factor 13 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:33,672,867...33,704,888
Ensembl chr 4:33,672,869...33,704,573 		JBrowse link
G DHX37 DEAH-box helicase 37 involved_in IBA GO_Central GO_REF:0000033 NCBI chr14:28,206,152...28,242,436
Ensembl chr14:28,211,579...28,242,435 		JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23562818) Ensembl
MGI		 PMID:23562818 GO_REF:0000107 NCBI chr 6:51,734,318...51,757,508
Ensembl chr 6:51,734,320...51,757,553 		JBrowse link
G GTF2H5 general transcription factor IIH subunit 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23562818) Ensembl
MGI		 PMID:23562818 GO_REF:0000107 NCBI chr 1:8,928,280...8,935,030
Ensembl chr 1:8,917,240...8,934,983 		JBrowse link
G HEATR1 HEAT repeat containing 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr14:54,821,073...54,870,873
Ensembl chr14:54,821,171...54,869,857 		JBrowse link
G NOL10 nucleolar protein 10 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:125,861,422...125,956,626
Ensembl chr 3:125,861,432...125,956,887 		JBrowse link
G RPS16 ribosomal protein S16 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:48,085,684...48,088,368
Ensembl chr 6:48,085,678...48,088,423 		JBrowse link
G RPS19 ribosomal protein S19 involved_in ISO (PMID:16990592), (PMID:17053056) UniProt PMID:16990592 PMID:17053056 NCBI chr 6:50,003,198...50,010,135
Ensembl chr 6:50,000,948...50,010,341 		JBrowse link
G RPS8 ribosomal protein S8 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:166,550,574...166,553,289
Ensembl chr 6:166,549,949...166,553,230 		JBrowse link
G RRP36 ribosomal RNA processing 36 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:38,087,258...38,094,548
Ensembl chr 7:38,087,258...38,094,548 		JBrowse link
G SLX9 SLX9 ribosome biogenesis factor involved_in IEA InterPro GO_REF:0000002 NCBI chr13:207,560,855...207,588,502
Ensembl chr13:207,560,990...207,588,501 		JBrowse link
G TSR1 TSR1 ribosome maturation factor involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:48,404,306...48,417,622
Ensembl chr12:48,404,308...48,416,687 		JBrowse link
G TSR2 TSR2 ribosome maturation factor involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:47,186,610...47,192,465
Ensembl chr  X:47,186,643...47,192,452 		JBrowse link
G UTP25 UTP25 small subunit processome component involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:133,115,177...133,141,258
Ensembl chr 9:133,105,063...133,141,217 		JBrowse link
G UTP4 UTP4 small subunit processome component involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:17,784,908...17,818,417
Ensembl chr 6:17,778,556...17,818,132 		JBrowse link
G UTP6 UTP6 small subunit processome component involved_in IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr12:43,061,579...43,089,479
Ensembl chr12:43,032,915...43,089,205 		JBrowse link
G WDR43 WD repeat domain 43 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:110,317,549...110,365,108
Ensembl chr 3:110,318,538...110,365,062 		JBrowse link
G WDR46 WD repeat domain 46 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:29,645,128...29,653,567
Ensembl chr 7:29,645,130...29,653,579 		JBrowse link
rRNA acetylation involved in maturation of SSU-rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NAT10 N-acetyltransferase 10 involved_in IBA
IEA		 GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr 2:26,786,172...26,827,060
Ensembl chr 2:26,786,177...26,826,992 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17633
    metabolic process 10708
      primary metabolic process 9434
        RNA processing 833
          rRNA processing 186
            maturation of SSU-rRNA 46
              maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA) + 0
              maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 0
              maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) + 31
              maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) + 0
              rRNA acetylation involved in maturation of SSU-rRNA 1
Path 2
Term Annotations click to browse term
  biological_process 17633
    cellular process 16612
      cellular metabolic process 8962
        cellular biosynthetic process 6932
          macromolecule biosynthetic process 6449
            nucleic acid biosynthetic process 3979
              RNA biosynthetic process 3879
                RNA processing 833
                  rRNA processing 186
                    maturation of SSU-rRNA 46
                      maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA) + 0
                      maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 0
                      maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) + 31
                      maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) + 0
                      rRNA acetylation involved in maturation of SSU-rRNA 1
paths to the root