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ONTOLOGY REPORT - ANNOTATIONS


Term:melanocyte differentiation
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Accession:GO:0030318 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires specialized features of a melanocyte.
Synonyms:exact_synonym: melanocyte cell differentiation;   melanophore differentiation



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melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 acts_upstream_of
involved_in
ISO
IEA
MGI:1916320|MGI:3766915 (MGI:3778519|PMID:18454205)
GO_REF:0000107
RGD
Ensembl
PMID:18454205 GO_REF:0000107 MGI:3778519 NCBI chr 7:125,396,227...125,528,020
Ensembl chr 7:125,397,734...125,527,777
JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of
involved_in
ISO
IEA
MGI:2660628 (MGI:3778519|PMID:18454205)
GO_REF:0000107
RGD
Ensembl
PMID:18454205 GO_REF:0000107 MGI:3778519 NCBI chr 4:125,290,633...125,462,988
Ensembl chr 4:125,291,490...125,462,929
JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:104554|MGI:2156165|MGI:2158305 (MGI:2154874|PMID:11709185), (MGI:2180980|PMID:12086670), (MGI:81816|PMID:8758925)
MGI:2158305 (MGI:3618415|PMID:16427619)
RGD PMID:8758925 PMID:11709185 PMID:12086670 PMID:16427619 MGI:2154874 MGI:2180980 MGI:3618415 MGI:81816 NCBI chr13:22,689,783...22,853,920 JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO MGI:1856982 (MGI:77000|PMID:2379821) RGD PMID:2379821 MGI:77000 NCBI chr 3:109,816,397...109,826,528
Ensembl chr 3:109,816,366...109,828,308
JBrowse link
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 involved_in
acts_upstream_of_or_within
ISO
ISS
IBA
(PMID:8901575)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:8901575 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr  X:67,350,376...67,355,072
Ensembl chr  X:67,350,373...67,355,162
JBrowse link
G Edn3 endothelin 3 acts_upstream_of_or_within ISO (MGI:85072|PMID:9012511) RGD PMID:9012511 MGI:85072 NCBI chr 3:163,562,307...163,586,636
Ensembl chr 3:163,562,520...163,585,093
JBrowse link
G Ednrb endothelin receptor type B acts_upstream_of_or_within IDA
ISO
MGI:1856148 (MGI:77000|PMID:2379821), (MGI:85072|PMID:9012511) RGD PMID:2379821 PMID:9012511 PMID:11709437 MGI:77000 MGI:85072, RGD:628459 NCBI chr15:80,640,839...80,672,115
Ensembl chr15:80,643,043...80,672,115
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO
ISS
(PMID:28964717)
GO_REF:0000024
RGD
UniProt
PMID:28964717 GO_REF:0000024 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:3720956 (MGI:3796727|PMID:18397875) RGD PMID:18397875 MGI:3796727 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO MGI:1856712 (MGI:2175993|PMID:11836498) RGD PMID:11836498 MGI:2175993 NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268
JBrowse link
G Hps4 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 acts_upstream_of_or_within ISO MGI:1856931 (MGI:2175993|PMID:11836498) RGD PMID:11836498 MGI:2175993 NCBI chr12:44,264,037...44,294,791
Ensembl chr12:44,264,037...44,294,632
JBrowse link
G Hps6 HPS6, biogenesis of lysosomal organelles complex 2 subunit 3 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1856544 (MGI:77000|PMID:2379821)
RGD PMID:2379821 PMID:21873635 MGI:77000, RGD:13792537 NCBI chr 1:244,853,256...244,855,865
Ensembl chr 1:244,853,194...244,855,883
JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase involved_in ISO (MGI:3612335|PMID:15768389) RGD PMID:15768389 MGI:3612335 NCBI chr14:32,547,459...32,624,694
Ensembl chr14:32,548,877...32,624,652
JBrowse link
G Lrmda leucine rich melanocyte differentiation associated involved_in ISO (PMID:23395477) RGD PMID:23395477 NCBI chr15:1,223,098...2,284,764
Ensembl chr15:1,225,710...2,284,749
JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISS
ISO
GO_REF:0000024
(MGI:5049797|PMID:21610032)
UniProt
RGD
PMID:21610032 GO_REF:0000024 MGI:5049797 NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880
JBrowse link
G Mitf melanocyte inducing transcription factor involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
MGI:1856088|MGI:1856095|MGI:88138 (MGI:2180980|PMID:12086670), (MGI:77000|PMID:2379821)
Ensembl
RGD
PMID:2379821 PMID:12086670 PMID:21873635 GO_REF:0000107 MGI:2180980 MGI:77000, RGD:13792537 NCBI chr 4:130,409,020...130,621,145
Ensembl chr 4:130,409,217...130,621,145
JBrowse link
G Mlph melanophilin acts_upstream_of_or_within ISO MGI:1856674 (MGI:2149529|PMID:11504925), (MGI:77000|PMID:2379821) RGD PMID:2379821 PMID:11504925 MGI:2149529 MGI:77000 NCBI chr 9:91,507,410...91,542,984
Ensembl chr 9:91,507,591...91,542,983
JBrowse link
G Mreg melanoregulin involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1856847 (MGI:68866|PMID:7828830), (MGI:77000|PMID:2379821)
RGD PMID:2379821 PMID:7828830 PMID:21873635 MGI:68866 MGI:77000, RGD:13792537 NCBI chr 9:73,786,727...73,842,081
Ensembl chr 9:73,787,267...73,842,087
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO MGI:1856004 (MGI:59447|PMID:1996138), (MGI:68866|PMID:7828830), (MGI:77000|PMID:2379821) RGD PMID:1996138 PMID:2379821 PMID:7828830 MGI:59447 MGI:68866 MGI:77000 NCBI chr 8:75,811,985...75,980,049
Ensembl chr 8:75,812,412...75,975,918
JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:1856114 (MGI:77000|PMID:2379821)
PMID:21873635
RGD PMID:2379821 PMID:21873635 MGI:77000, RGD:13792537 NCBI chr 1:107,116,278...107,446,093
Ensembl chr 1:107,116,278...107,446,074
JBrowse link
G Olr59 olfactory receptor 59 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:27226631)
Ensembl
UniProt
RGD
PMID:27226631 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:157,193,051...157,227,707
Ensembl chr 1:157,193,080...157,211,179
JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within ISO MGI:1856656 (MGI:77000|PMID:2379821) RGD PMID:2379821 MGI:52947 MGI:77000 NCBI chr 8:73,782,730...73,836,630
Ensembl chr 8:73,782,694...73,847,829
JBrowse link
G Slc24a5 solute carrier family 24 member 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:112,319,305...112,339,231
Ensembl chr 3:112,319,308...112,339,231
JBrowse link
G Sox10 SRY-box transcription factor 10 acts_upstream_of_or_within ISO MGI:3701358 (MGI:3701016|PMID:16790476) RGD PMID:16790476 MGI:3701016 NCBI chr 7:110,725,274...110,735,544
Ensembl chr 7:110,725,274...110,735,544
JBrowse link
G Tyrp1 tyrosinase-related protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1855962 (MGI:77000|PMID:2379821)
RGD PMID:2379821 PMID:21873635 MGI:77000, RGD:13792537 NCBI chr 5:95,280,982...95,299,516
Ensembl chr 5:95,280,982...95,299,516
JBrowse link
positive regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 acts_upstream_of_or_within ISO MGI:1916320|MGI:3766915 (MGI:3778519|PMID:18454205) RGD PMID:18454205 MGI:3778519 NCBI chr 7:125,396,227...125,528,020
Ensembl chr 7:125,397,734...125,527,777
JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO MGI:2660628 (MGI:3778519|PMID:18454205) RGD PMID:18454205 MGI:3778519 NCBI chr 4:125,290,633...125,462,988
Ensembl chr 4:125,291,490...125,462,929
JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:2158305 (MGI:3618415|PMID:16427619) RGD PMID:16427619 MGI:3618415 NCBI chr13:22,689,783...22,853,920 JBrowse link
G Kitlg KIT ligand acts_upstream_of_or_within ISO (MGI:3618415|PMID:16427619) RGD PMID:16427619 MGI:3618415 NCBI chr 7:34,896,075...34,977,215
Ensembl chr 7:34,896,053...34,977,214
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:5574413|PMID:24769727) RGD PMID:24769727 MGI:5574413 NCBI chr 3:29,219,765...29,342,094
Ensembl chr 3:29,218,301...29,345,157
JBrowse link
regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gna11 G protein subunit alpha 11 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2682213 (MGI:3055244|PMID:15322542)
Ensembl
RGD
PMID:15322542 GO_REF:0000107 MGI:3055244 NCBI chr 7:8,163,752...8,177,636
Ensembl chr 7:8,162,750...8,179,812
JBrowse link
G Gnaq G protein subunit alpha q involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2681766 (MGI:3055244|PMID:15322542)
Ensembl
RGD
PMID:15322542 GO_REF:0000107 MGI:3055244 NCBI chr 1:213,425,631...213,671,947
Ensembl chr 1:213,424,465...213,667,672
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18737
    pigmentation 102
      developmental pigmentation 55
        pigment cell differentiation 40
          melanocyte differentiation 29
            early stripe melanocyte differentiation + 0
            late stripe melanocyte differentiation + 0
            negative regulation of melanocyte differentiation + 0
            positive regulation of melanocyte differentiation + 5
            regulation of melanocyte differentiation + 7
Path 2
Term Annotations click to browse term
  biological_process 18737
    cellular process 17432
      cellular developmental process 4534
        cell differentiation 4511
          pigment cell differentiation 40
            melanocyte differentiation 29
              early stripe melanocyte differentiation + 0
              late stripe melanocyte differentiation + 0
              negative regulation of melanocyte differentiation + 0
              positive regulation of melanocyte differentiation + 5
              regulation of melanocyte differentiation + 7
paths to the root