ONTOLOGY REPORT - ANNOTATIONS
Term: T-tubule
Accession: GO:0030315
browse the term
Definition: Invagination of the plasma membrane of a muscle cell that extends inward from the cell surface around each myofibril. The ends of T-tubules make contact with the sarcoplasmic reticulum membrane.
Synonyms: exact_synonym: transverse tubule
related_synonym: triad
xref: Wikipedia:T-tubule
G
Abcc9
ATP binding cassette subfamily C member 9
IDA
RGD
PMID:15647111
RGD:1598637
NCBI chr 4:175,531,854...175,655,849
Ensembl chr 4:175,532,547...175,655,356
G
Abcc9_v2
ATP binding cassette subfamily C member 9, variant 2
IDA
RGD
PMID:12738227
RGD:1598649
G
Adra1a
adrenoceptor alpha 1A
IDA
RGD
PMID:18467629
RGD:5688343
NCBI chr15:40,830,125...40,935,902
Ensembl chr15:40,832,534...40,927,500
G
Adra1b
adrenoceptor alpha 1B
IDA
RGD
PMID:18467629
RGD:5688343
NCBI chr10:28,255,025...28,373,418
Ensembl chr10:28,255,025...28,312,919
G
Akap6
A-kinase anchoring protein 6
located_in
IDA
PMID:9679148
BHF-UCL
PMID:9679148
RGD:8553491
NCBI chr 6:70,184,101...70,624,369
Ensembl chr 6:70,184,175...70,619,738
G
Akap7
A-kinase anchoring protein 7
IDA
RGD
PMID:14569017
RGD:1304018
NCBI chr 1:20,087,190...20,217,799
Ensembl chr 1:20,087,373...20,217,797
G
Ank2
ankyrin 2
located_in
ISO
(MGI:2449848|PMID:12571597), (MGI:3610760|PMID:16292983)
RGD
PMID:12571597 PMID:16292983
MGI:2449848 MGI:3610760
NCBI chr 2:215,378,028...215,954,015
Ensembl chr 2:215,379,680...215,862,923
G
Ank3
ankyrin 3
located_in
IDA
PMID:15579534
BHF-UCL
PMID:15579534
RGD:6484228
NCBI chr20:18,602,267...19,225,831
Ensembl chr20:18,602,786...19,086,300
G
Aqp4
aquaporin 4
IDA
RGD
PMID:20849844
RGD:5490121
NCBI chr18:6,507,903...6,524,558
Ensembl chr18:6,507,903...6,524,856
G
Asb15
ankyrin repeat and SOCS box containing 15
is_active_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 4:53,021,553...53,050,846
Ensembl chr 4:53,031,692...53,049,928
G
Atp1a1
ATPase Na+/K+ transporting subunit alpha 1
located_in
ISO IDA
UniProtKB:P05026 (PMID:19751721) PMID:17442282 (MGI:3610760|PMID:16292983)
RGD
PMID:16292983 PMID:19751721 PMID:17442282
MGI:3610760 , RGD:6903343
NCBI chr 2:189,020,722...189,048,826
Ensembl chr 2:189,020,722...189,048,837
G
Atp1a2
ATPase Na+/K+ transporting subunit alpha 2
located_in
IDA ISO
UniProtKB:P05026 (PMID:19751721) PMID:17442282 (MGI:3610760|PMID:16292983)
RGD
PMID:16292983 PMID:19751721 PMID:17442282 PMID:17442282
MGI:3610760 , RGD:6903343 , RGD:6903343
NCBI chr13:84,729,597...84,754,544
Ensembl chr13:84,729,601...84,754,544
G
Atp1b1
ATPase Na+/K+ transporting subunit beta 1
located_in
ISO
UniProtKB:P05023|UniProtKB:P50993 (PMID:19751721)
RGD
PMID:19751721
NCBI chr13:76,786,580...76,807,096
Ensembl chr13:76,786,578...76,807,459
G
Atp2b4
ATPase plasma membrane Ca2+ transporting 4
located_in
ISO
(PMID:19287093) (MGI:3848765|PMID:19287093)
RGD
PMID:19287093
MGI:3848765
NCBI chr13:45,156,137...45,255,292
Ensembl chr13:45,156,146...45,255,246
G
Bin1
bridging integrator 1
located_in
IDA ISO IEA
PMID:9182667 (MGI:5583915|PMID:24836577) GO_REF:0000107
RGD Ensembl
PMID:24836577 PMID:9182667
GO_REF:0000107 MGI:5583915 , RGD:8553847
NCBI chr18:24,009,731...24,067,267
Ensembl chr18:24,009,653...24,067,263
G
Cacna1c
calcium voltage-gated channel subunit alpha1 C
located_in
IDA IEA ISO TAS
GO_REF:0000044 (MGI:5314827|PMID:22355118) PMID:11053140
UniProt RGD
PMID:22355118 PMID:14569017 PMID:11053140
GO_REF:0000044 MGI:5314827 , RGD:1304018 , RGD:8554533
NCBI chr 4:151,764,138...152,379,454
Ensembl chr 4:151,764,138...152,379,648
G
Cacna1s
calcium voltage-gated channel subunit alpha1 S
located_in
ISS ISO IEA
GO_REF:0000024 (MGI:1342891|PMID:10444070), (MGI:3529615|PMID:15536090), (MGI:6708323|PMID:26078055), (MGI:84458|PMID:8943043) GO_REF:0000107 (PMID:17204937)
UniProt RGD Ensembl
PMID:8943043 PMID:10444070 PMID:15536090 PMID:17204937 PMID:26078055
GO_REF:0000024 GO_REF:0000107 MGI:1342891 MGI:3529615 MGI:6708323 MGI:84458
NCBI chr13:47,493,949...47,564,194
Ensembl chr13:47,493,949...47,564,318
G
Cacna2d1
calcium voltage-gated channel auxiliary subunit alpha2delta 1
located_in
ISO
(MGI:3529615|PMID:15536090)
RGD
PMID:15536090
MGI:3529615
NCBI chr 4:18,950,611...19,374,969
Ensembl chr 4:18,951,002...19,374,969
G
Cacnb1
calcium voltage-gated channel auxiliary subunit beta 1
located_in
ISO
(MGI:6708323|PMID:26078055), (MGI:84458|PMID:8943043)
RGD
PMID:8943043 PMID:26078055
MGI:6708323 MGI:84458
NCBI chr10:82,998,182...83,018,838
Ensembl chr10:82,998,182...83,018,694
G
Cacng1
calcium voltage-gated channel auxiliary subunit gamma 1
located_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr10:92,652,924...92,665,612
Ensembl chr10:92,652,614...92,665,783
G
Camk2d
calcium/calmodulin-dependent protein kinase II delta
located_in
ISO
(MGI:3528790|PMID:15652482)
RGD
PMID:15652482
MGI:3528790
NCBI chr 2:215,023,785...215,287,351
Ensembl chr 2:215,024,004...215,286,178
G
Capn3
calpain 3
located_in
IDA
PMID:19144634
UniProt
PMID:19144634
RGD:8553509
NCBI chr 3:107,407,518...107,457,858
Ensembl chr 3:107,407,850...107,457,858
G
Casq1
calsequestrin 1
IDA
RGD
PMID:11010809
RGD:2313244
NCBI chr13:84,670,648...84,680,339
Ensembl chr13:84,670,649...84,680,339
G
Cav3
caveolin 3
located_in
IDA ISO
PMID:9925767 (MGI:3612003|PMID:16319126), (MGI:85086|PMID:9008709)
RGD
PMID:9008709 PMID:16319126 PMID:16501018 PMID:9925767
MGI:3612003 MGI:85086 , RGD:1599531 , RGD:8553487
NCBI chr 4:145,582,168...145,598,142
Ensembl chr 4:145,582,060...145,598,137
G
Cdh2
cadherin 2
located_in
IDA
PMID:15579534
BHF-UCL
PMID:15579534
RGD:6484228
NCBI chr18:7,776,704...7,990,934
Ensembl chr18:7,776,704...7,990,167
G
Cltc
clathrin heavy chain
IDA
RGD
PMID:7536412
RGD:2303181
NCBI chr10:71,517,661...71,574,591
Ensembl chr10:71,517,663...71,573,737
G
Dlg1
discs large MAGUK scaffold protein 1
IDA
RGD
PMID:11181181
RGD:1581466
NCBI chr11:68,911,883...69,103,230
Ensembl chr11:68,911,883...69,102,689
G
Dysf
dysferlin
located_in is_active_in
ISO IBA
(PMID:17185750) PMID:21873635 (MGI:3612003|PMID:16319126), (MGI:5545678|PMID:24302765), (MGI:5613103|PMID:24784578)
RGD
PMID:16319126 PMID:17185750 PMID:24302765 PMID:24784578 PMID:21873635
MGI:3612003 MGI:5545678 MGI:5613103 , RGD:13792537
NCBI chr 4:116,490,877...116,690,709
Ensembl chr 4:116,490,616...116,690,709
G
Ednra
endothelin receptor type A
IDA
RGD
PMID:12972433
RGD:1581834
NCBI chr19:30,233,540...30,303,727
Ensembl chr19:30,233,571...30,297,049
G
Esr1
estrogen receptor 1
IDA
RGD
PMID:16876190
RGD:1601102
NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002
G
Ezr
ezrin
IDA
RGD
PMID:19028724
RGD:7207798
NCBI chr 1:46,967,961...47,011,505
Ensembl chr 1:46,967,658...47,011,505
G
Fxyd1
FXYD domain-containing ion transport regulator 1
located_in
IDA IEA
PMID:23532852 GO_REF:0000044
UniProt
PMID:23532852
GO_REF:0000044, RGD:9685469
NCBI chr 1:86,287,163...86,291,478
Ensembl chr 1:86,287,165...86,291,278
G
Got2
glutamic-oxaloacetic transaminase 2
IDA
RGD
PMID:23743348
RGD:11041118
NCBI chr19:9,174,304...9,199,995
Ensembl chr19:9,174,311...9,199,994
G
Igf1r
insulin-like growth factor 1 receptor
located_in
IDA ISO
(MGI:5510937|PMID:23695157)
RGD
PMID:23695157 PMID:23118311
MGI:5510937 , RGD:10046017
NCBI chr 1:121,549,839...121,838,545
Ensembl chr 1:121,550,743...121,831,777
G
Kcnd2
potassium voltage-gated channel subfamily D member 2
located_in
IDA
PMID:10860776
UniProt
PMID:10860776
RGD:10047321
NCBI chr 4:49,775,812...50,277,746
Ensembl chr 4:49,776,246...50,277,728
G
Kcnj11
potassium inwardly-rectifying channel, subfamily J, member 11
located_in
IDA ISO
(MGI:4844023|PMID:20610380)
RGD
PMID:20610380 PMID:15647111
MGI:4844023 , RGD:1598637
NCBI chr 1:96,591,048...96,594,574
Ensembl chr 1:96,591,049...96,594,082
G
Kcnj12
potassium inwardly-rectifying channel, subfamily J, member 12
IDA
RGD
PMID:11181181
RGD:1581466
NCBI chr10:45,696,621...45,745,528
Ensembl chr10:45,696,849...45,745,492
G
Kcnj2
potassium inwardly-rectifying channel, subfamily J, member 2
IDA
RGD
PMID:23640888
RGD:7247427
NCBI chr10:96,060,849...96,071,401
Ensembl chr10:96,060,821...96,071,445
G
Kcnj3
potassium inwardly-rectifying channel, subfamily J, member 3
IDA
RGD
PMID:11561006
RGD:1581474
NCBI chr 3:39,944,896...40,106,646
Ensembl chr 3:39,945,351...40,109,124
G
Kcnj5
potassium inwardly-rectifying channel, subfamily J, member 5
IDA
RGD
PMID:11561006
RGD:1581474
NCBI chr 8:30,724,923...30,753,083
Ensembl chr 8:30,724,925...30,753,518
G
Kcnn2
potassium calcium-activated channel subfamily N member 2
located_in
ISO
(MGI:3771286|PMID:17110593)
RGD
PMID:17110593
MGI:3771286
NCBI chr18:37,817,966...38,258,347
Ensembl chr18:37,817,957...38,258,347
G
Msn
moesin
IDA
RGD
PMID:19028724
RGD:7207798
NCBI chr X:60,996,043...61,064,011
Ensembl chr X:60,995,951...61,065,628
G
Nos1
nitric oxide synthase 1
located_in
ISO
(MGI:5613473|PMID:19800018)
RGD
PMID:19800018
MGI:5613473
NCBI chr12:38,615,111...38,795,492
Ensembl chr12:38,626,714...38,710,945
G
Nos1ap
nitric oxide synthase 1 adaptor protein
colocalizes_with
ISO
(MGI:5617336|PMID:24665357)
RGD
PMID:24665357
MGI:5617336
NCBI chr13:82,549,786...82,820,949
Ensembl chr13:82,530,577...82,820,949
G
Ppp3cb
protein phosphatase 3 catalytic subunit beta
located_in
ISO
(MGI:3848765|PMID:19287093)
RGD
PMID:19287093
MGI:3848765
NCBI chr15:3,759,950...3,804,976
Ensembl chr15:3,760,030...3,804,981
G
Prkar2a
protein kinase cAMP-dependent type II regulatory subunit alpha
IDA
RGD
PMID:14569017
RGD:1304018
NCBI chr 8:109,393,189...109,458,832
Ensembl chr 8:109,395,833...109,455,628
G
Prkce
protein kinase C, epsilon
IDA
RGD
PMID:19525381
RGD:2317914
NCBI chr 6:7,965,048...8,451,966
Ensembl chr 6:7,965,048...8,451,719
G
Rdx
radixin
IDA
RGD
PMID:19028724
RGD:7207798
NCBI chr 8:52,379,494...52,437,673
Ensembl chr 8:52,379,494...52,437,678
G
Rem1
RRAD and GEM like GTPase 1
located_in
ISO
(MGI:6708323|PMID:26078055)
RGD
PMID:26078055
MGI:6708323
NCBI chr 3:141,103,722...141,112,206
Ensembl chr 3:141,103,766...141,112,203
G
Rrad
RRAD, Ras related glycolysis inhibitor and calcium channel regulator
located_in
ISO
(MGI:6708323|PMID:26078055)
RGD
PMID:26078055
MGI:6708323
NCBI chr19:354,184...357,424
Ensembl chr19:354,198...357,417
G
Rtn2
reticulon 2
part_of located_in
ISS ISO
GO_REF:0000024 (MGI:4438323|PMID:19720795)
UniProt RGD
PMID:19720795
GO_REF:0000024 MGI:4438323
NCBI chr 1:78,935,056...78,948,069
Ensembl chr 1:78,935,104...78,948,069
G
Ryr1
ryanodine receptor 1
located_in
ISO
(MGI:3529615|PMID:15536090), (MGI:5314827|PMID:22355118), (MGI:5510937|PMID:23695157), (MGI:84458|PMID:8943043)
RGD
PMID:8943043 PMID:15536090 PMID:22355118 PMID:23695157
MGI:3529615 MGI:5314827 MGI:5510937 MGI:84458
NCBI chr 1:84,292,578...84,423,799
Ensembl chr 1:84,292,578...84,423,812
G
Scn1a
sodium voltage-gated channel alpha subunit 1
located_in
IEA ISO
GO_REF:0000107 (MGI:3625769|PMID:15746173)
Ensembl RGD
PMID:15746173
GO_REF:0000107 MGI:3625769
NCBI chr 3:50,952,790...51,071,804
Ensembl chr 3:50,952,791...51,071,699
G
Scn1b
sodium voltage-gated channel beta subunit 1
located_in
ISO IEA
(MGI:3056873|PMID:15272007), (MGI:4461877|PMID:18178574) GO_REF:0000107
RGD Ensembl
PMID:15272007 PMID:18178574
GO_REF:0000107 MGI:3056873 MGI:4461877
NCBI chr 1:86,353,917...86,363,836
Ensembl chr 1:86,353,917...86,363,739
G
Scn2a
sodium voltage-gated channel alpha subunit 2
located_in
ISO
(MGI:3625769|PMID:15746173)
RGD
PMID:15746173
MGI:3625769
NCBI chr 3:50,302,781...50,437,504
Ensembl chr 3:50,302,877...50,437,214
G
Scn2b
sodium voltage-gated channel beta subunit 2
is_active_in located_in
ISO
(MGI:6256920|PMID:27932425)
RGD
PMID:27932425
MGI:6256920
NCBI chr 8:45,425,629...45,437,765
Ensembl chr 8:45,425,629...45,437,765
G
Scn5a
sodium voltage-gated channel alpha subunit 5
located_in
IDA IEA ISO
GO_REF:0000107 (MGI:3625769|PMID:15746173), (MGI:4461877|PMID:18178574) PMID:15579534 (PMID:15579534)
Ensembl RGD
PMID:15579534 PMID:15746173 PMID:18178574 PMID:15579534 PMID:15579534
GO_REF:0000107 MGI:3625769 MGI:4461877 , RGD:6484228 , RGD:6484228
NCBI chr 8:119,220,905...119,318,816
Ensembl chr 8:119,220,905...119,318,769
G
Slc2a4
solute carrier family 2 member 4
IDA
RGD
PMID:20868366
RGD:7349316
NCBI chr10:54,666,015...54,671,581
Ensembl chr10:54,666,015...54,671,565
G
Slc30a1
solute carrier family 30 member 1
located_in
IDA
PMID:16741752
BHF-UCL
PMID:16741752
RGD:8554228
NCBI chr13:103,491,037...103,494,910
Ensembl chr13:103,491,037...103,494,910
G
Slc8a1
solute carrier family 8 member A1
located_in
IDA ISO TAS
PMID:1514597 (MGI:3528790|PMID:15652482), (MGI:3610760|PMID:16292983), (MGI:5314827|PMID:22355118) PMID:11053140
RGD
PMID:15652482 PMID:16292983 PMID:22355118 PMID:11121386 PMID:1514597 PMID:11053140 More...
MGI:3528790 MGI:3610760 MGI:5314827 , RGD:2316982 , RGD:8553384 , RGD:8554533
NCBI chr 6:13,194,609...13,547,369
Ensembl chr 6:13,194,662...13,535,628
G
Slc9a1
solute carrier family 9 member A1
IDA
RGD
PMID:20868366
RGD:7349316
NCBI chr 5:145,576,341...145,629,630
Ensembl chr 5:145,576,334...145,629,624
G
Sri
sorcin
IDA
RGD
PMID:16931553
RGD:7327199
NCBI chr 4:25,973,493...25,997,879
Ensembl chr 4:25,966,750...25,998,077
G
Stac
SH3 and cysteine rich domain
located_in
ISO
(MGI:5643852|PMID:23818578)
RGD
PMID:23818578
MGI:5643852
NCBI chr 8:111,530,800...111,653,228
Ensembl chr 8:111,530,800...111,654,008
G
Stbd1
starch binding domain 1
located_in
ISO
(PMID:9794794)
RGD
PMID:9794794
NCBI chr14:15,470,452...15,473,857
Ensembl chr14:15,469,582...15,477,443
G
Tgfb3
transforming growth factor, beta 3
IDA
RGD
PMID:9281452
RGD:1625705
NCBI chr 6:105,704,058...105,726,661
Ensembl chr 6:105,704,236...105,726,564
G
Vdr
vitamin D receptor
IDA
RGD
PMID:20015453
RGD:4889912
NCBI chr 7:128,987,981...129,037,677
Ensembl chr 7:128,987,981...129,037,677
G
Cacna1c
calcium voltage-gated channel subunit alpha1 C
part_of
IDA ISO ISS
PMID:15170217 (PMID:15454078) GO_REF:0000024
RGD BHF-UCL
PMID:15454078 PMID:15170217
GO_REF:0000024, RGD:11558004
NCBI chr 4:151,764,138...152,379,454
Ensembl chr 4:151,764,138...152,379,648
G
Cacna1d
calcium voltage-gated channel subunit alpha1 D
part_of
ISO IEA
(PMID:1309651) GO_REF:0000107
RGD Ensembl
PMID:1309651
GO_REF:0000107
NCBI chr16:5,227,157...5,521,163
Ensembl chr16:5,228,306...5,668,215
G
Cacna1s
calcium voltage-gated channel subunit alpha1 S
part_of
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr13:47,493,949...47,564,194
Ensembl chr13:47,493,949...47,564,318
G
Cacna2d1
calcium voltage-gated channel auxiliary subunit alpha2delta 1
part_of
IDA IBA ISO
PMID:25527503 PMID:21873635 (PMID:1309651)
RGD
PMID:1309651 PMID:25527503 PMID:21873635
RGD:11059598 , RGD:13792537
NCBI chr 4:18,950,611...19,374,969
Ensembl chr 4:18,951,002...19,374,969
G
Cacnb2
calcium voltage-gated channel auxiliary subunit beta 2
part_of
ISO IDA
(PMID:1309651) PMID:26680202
RGD
PMID:1309651 PMID:26680202
RGD:12907551
NCBI chr17:77,564,630...77,910,000
Ensembl chr17:77,564,460...77,909,106
G
Cacnb3
calcium voltage-gated channel auxiliary subunit beta 3
part_of
IDA IMP
PMID:15170217 PMID:25527503 PMID:10666413
UniProt BHF-UCL
PMID:15170217 PMID:25527503 PMID:10666413
RGD:11558004 , RGD:11059598 , RGD:13673808
NCBI chr 7:129,784,799...129,797,074
Ensembl chr 7:129,783,674...129,797,074
G
Cacng1
calcium voltage-gated channel auxiliary subunit gamma 1
part_of
IBA IMP ISS
PMID:21873635 PMID:9049149 GO_REF:0000024
UniProt
PMID:21873635 PMID:9049149
GO_REF:0000024, RGD:13792537 , RGD:69791
NCBI chr10:92,652,924...92,665,612
Ensembl chr10:92,652,614...92,665,783
G
Cacng4
calcium voltage-gated channel auxiliary subunit gamma 4
part_of
ISS ISO
GO_REF:0000024 (PMID:21127204)
UniProt RGD
PMID:21127204
GO_REF:0000024
NCBI chr10:92,686,100...92,745,601
Ensembl chr10:92,683,761...92,746,126
G
Cacng6
calcium voltage-gated channel auxiliary subunit gamma 6
part_of
IBA ISO ISS
PMID:21873635 (PMID:21127204) GO_REF:0000024
RGD UniProt
PMID:21127204 PMID:21873635
GO_REF:0000024, RGD:13792537
NCBI chr 1:65,732,910...65,747,377
Ensembl chr 1:65,732,632...65,747,341
G
Cacng7
calcium voltage-gated channel auxiliary subunit gamma 7
part_of
ISO ISS
(PMID:21127204) GO_REF:0000024
RGD UniProt
PMID:21127204
GO_REF:0000024
NCBI chr 1:65,800,820...65,831,165
Ensembl chr 1:65,800,355...65,831,006
G
Cacng8
calcium voltage-gated channel auxiliary subunit gamma 8
part_of
ISS ISO
GO_REF:0000024 (MGI:6164122|PMID:21127204)
UniProt RGD
PMID:21127204
GO_REF:0000024 MGI:6164122
NCBI chr 1:65,755,334...65,775,567
Ensembl chr 1:65,755,334...65,779,089
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all