Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Projects (beta) QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:intestinal cholesterol absorption
go back to main search page
Accession:GO:0030299 term browser browse the term
Definition:Uptake of cholesterol into the blood by absorption from the small intestine.


show annotations for term's descendants           Sort by:
intestinal cholesterol absorption term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcg5 ATP binding cassette subfamily G member 5 involved_in IC (MGI:2386529|PMID:12208868) BHF-UCL PMID:12208868 MGI:2386529 NCBI chr17:84,965,602...84,990,439
Ensembl chr17:84,965,662...84,990,439 		JBrowse link
G Abcg8 ATP binding cassette subfamily G member 8 involved_in IC (MGI:2386529|PMID:12208868) BHF-UCL PMID:12208868 MGI:2386529 NCBI chr17:84,983,730...85,007,761
Ensembl chr17:84,983,730...85,007,761 		JBrowse link
G Cd36 CD36 molecule involved_in IMP (MGI:3718873|PMID:17507371) UniProt PMID:17507371 MGI:3718873 NCBI chr 5:17,986,688...18,093,957
Ensembl chr 5:17,986,688...18,093,799 		JBrowse link
G Cel carboxyl ester lipase involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:28,445,831...28,453,415
Ensembl chr 2:28,445,807...28,453,415 		JBrowse link
G Ldlr low density lipoprotein receptor involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:21,634,872...21,661,215
Ensembl chr 9:21,634,779...21,661,215 		JBrowse link
G Lima1 LIM domain and actin binding 1 involved_in IMP (MGI:6160379|PMID:29880681) UniProt PMID:29880681 MGI:6160379 NCBI chr15:99,676,351...99,773,292
Ensembl chr15:99,676,351...99,773,337 		JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr18:12,322,751...12,369,851
Ensembl chr18:12,322,749...12,369,457 		JBrowse link
G Npc1l1 NPC1 like intracellular cholesterol transporter 1 involved_in ISO
IBA
IMP		 (MGI:6201960|PMID:21873635)
(MGI:3041314|PMID:14976318)		 MGI
GO_Central
UniProt		 PMID:14976318 PMID:21873635 GO_REF:0000096 MGI:3041314 MGI:4834177 MGI:6201960 NCBI chr11:6,161,011...6,180,245
Ensembl chr11:6,161,013...6,180,143 		JBrowse link
G Pnlip pancreatic lipase acts_upstream_of_or_within IMP (MGI:2679793|PMID:12915407) MGI PMID:12915407 MGI:2679793 NCBI chr19:58,658,797...58,670,231
Ensembl chr19:58,640,930...58,670,220 		JBrowse link
negative regulation of intestinal cholesterol absorption term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcg5 ATP binding cassette subfamily G member 5 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:84,965,602...84,990,439
Ensembl chr17:84,965,662...84,990,439 		JBrowse link
G Abcg8 ATP binding cassette subfamily G member 8 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:84,983,730...85,007,761
Ensembl chr17:84,983,730...85,007,761 		JBrowse link
positive regulation of intestinal cholesterol absorption term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat2 acetyl-Coenzyme A acetyltransferase 2 involved_in IDA (MGI:5302163|PMID:22045928) CACAO PMID:22045928 MGI:5302163 NCBI chr17:13,161,929...13,179,612
Ensembl chr17:13,161,777...13,179,634 		JBrowse link
G Cyp8b1 cytochrome P450, family 8, subfamily b, polypeptide 1 involved_in IDA (MGI:3588413|PMID:12393855) UniProt PMID:12393855 MGI:3588413 NCBI chr 9:121,743,422...121,745,371
Ensembl chr 9:121,743,422...121,745,371 		JBrowse link
G Enpp7 ectonucleotide pyrophosphatase/phosphodiesterase 7 involved_in IMP (MGI:5574251|PMID:24650549) UniProt PMID:24650549 MGI:5574251 NCBI chr11:118,879,007...118,884,047
Ensembl chr11:118,879,014...118,884,047 		JBrowse link
G Lpcat3 lysophosphatidylcholine acyltransferase 3 involved_in IMP (MGI:5780634|PMID:26833026) UniProt PMID:26833026 MGI:5780634 NCBI chr 6:124,639,887...124,681,142
Ensembl chr 6:124,639,990...124,681,381 		JBrowse link
regulation of intestinal cholesterol absorption term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoa1 apolipoprotein A-I acts_upstream_of_or_within
involved_in		 IDA
IBA		 (MGI:1339009|PMID:10073953)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:10073953 PMID:21873635 MGI:1339009 MGI:6201960 NCBI chr 9:46,139,928...46,141,767
Ensembl chr 9:46,139,878...46,141,764 		JBrowse link
G Apoa2 apolipoprotein A-II acts_upstream_of_or_within IMP (MGI:84652|PMID:8962133) MGI PMID:8962133 MGI:84652 NCBI chr 1:171,049,133...171,053,948
Ensembl chr 1:171,052,623...171,053,948 		JBrowse link
G Apoa4 apolipoprotein A-IV acts_upstream_of_or_within
involved_in		 IMP
IBA		 (MGI:1096980|PMID:9323588)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:9323588 PMID:21873635 MGI:1096980 MGI:6201960 NCBI chr 9:46,152,142...46,154,756
Ensembl chr 9:46,151,994...46,154,757 		JBrowse link
G Lep leptin acts_upstream_of_or_within IDA (MGI:2386518|PMID:12114517) MGI PMID:12114517 MGI:2386518 NCBI chr 6:29,060,220...29,073,875
Ensembl chr 6:29,060,219...29,073,876 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28659
    multicellular organismal process 9386
      digestion 135
        lipid digestion 20
          intestinal cholesterol absorption 17
            negative regulation of intestinal cholesterol absorption 2
            positive regulation of intestinal cholesterol absorption 4
            regulation of intestinal cholesterol absorption + 10
Path 2
Term Annotations click to browse term
  biological_process 28659
    localization 5484
      establishment of localization 4798
        transport 4597
          organic substance transport 2943
            lipid transport 476
              sterol transport 147
                cholesterol transport 142
                  intestinal cholesterol absorption 17
                    negative regulation of intestinal cholesterol absorption 2
                    positive regulation of intestinal cholesterol absorption 4
                    regulation of intestinal cholesterol absorption + 10
paths to the root