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ONTOLOGY REPORT - ANNOTATIONS

Term:bone mineralization
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Accession:GO:0030282 term browser browse the term
Definition:The deposition of hydroxyapatite, a form of calcium phosphate with the formula Ca10(PO4)6(OH)2, in bone tissue.
Synonyms:narrow_synonym: bone calcification

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bone mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alox15 arachidonate 15-lipoxygenase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14716014) Ensembl
MGI		 PMID:14716014 GO_REF:0000107 NCBI chrNW_004936677:3,232,183...3,241,307
Ensembl chrNW_004936677:3,232,183...3,241,253 		JBrowse link
G Alpl alkaline phosphatase, biomineralization associated involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:7,209,196...7,229,899
Ensembl chrNW_004936474:7,209,093...7,229,989 		JBrowse link
G Ankh ANKH inorganic pyrophosphate transport regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936665:1,520,800...1,654,388
Ensembl chrNW_004936665:1,520,800...1,653,816 		JBrowse link
G Asgr2 asialoglycoprotein receptor 2 ISO RGD PMID:19841953 RGD:2316850 NCBI chrNW_004936595:416,013...423,872
Ensembl chrNW_004936595:415,955...424,392 		JBrowse link
G Aspn asporin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:2,080,014...2,104,534
Ensembl chrNW_004936487:2,079,973...2,104,499 		JBrowse link
G Atf4 activating transcription factor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:2,114,478...2,115,969
Ensembl chrNW_004936492:2,110,634...2,115,996 		JBrowse link
G Axin2 axin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19623616) Ensembl
MGI		 PMID:19623616 GO_REF:0000107 NCBI chrNW_004936541:7,155,963...7,242,466
Ensembl chrNW_004936541:7,211,985...7,242,470 		JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15657444), (PMID:19213727)
(PMID:19213727)		 Ensembl
MGI		 PMID:15657444 PMID:19213727 GO_REF:0000107 NCBI chrNW_004936485:12,428,765...12,439,570
Ensembl chrNW_004936485:12,428,710...12,439,454 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist involved_in ISO (PMID:19113921) BHF-UCL PMID:19113921 NCBI chrNW_004936539:8,321,432...8,323,909 JBrowse link
G Clec3b C-type lectin domain family 3 member B involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936695:731,184...738,752
Ensembl chrNW_004936695:730,729...738,952 		JBrowse link
G Col1a2 collagen type I alpha 2 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22910579) Ensembl
MGI		 PMID:22910579 GO_REF:0000107 NCBI chrNW_004936585:5,650,322...5,686,393
Ensembl chrNW_004936585:5,651,180...5,685,923 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within ISO (PMID:19248115) MGI PMID:19248115 NCBI chrNW_004936778:515,600...530,828 JBrowse link
G Comp cartilage oligomeric matrix protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27151399) Ensembl
MGI		 PMID:27151399 GO_REF:0000107 NCBI chrNW_004936596:2,544,389...2,551,155
Ensembl chrNW_004936596:2,544,389...2,551,164 		JBrowse link
G Dlk1 delta like non-canonical Notch ligand 1 acts_upstream_of_or_within ISO (PMID:21308776) MGI PMID:21308776 NCBI chrNW_004936604:4,504,519...4,511,897
Ensembl chrNW_004936604:4,504,503...4,511,910 		JBrowse link
G Duox2 dual oxidase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17440044) Ensembl
MGI		 PMID:17440044 GO_REF:0000107 NCBI chrNW_004936471:7,812,163...7,831,258
Ensembl chrNW_004936471:7,813,128...7,831,258 		JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 acts_upstream_of_or_within ISO (PMID:11997520) MGI PMID:11997520 NCBI chrNW_004936712:413,602...454,443
Ensembl chrNW_004936712:414,446...454,449 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in
acts_upstream_of		 ISO (PMID:28652107)
(PMID:15920156)
(PMID:25368121)
(PMID:21930712)
(PMID:31666661)
(PMID:24770645)
(PMID:12082181)
(PMID:12817751)
(PMID:26763447)		 MGI PMID:12082181 PMID:12817751 PMID:15920156 PMID:21930712 PMID:24770645 More... NCBI chrNW_004937067:194,375...246,607 JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17020410) Ensembl
MGI		 PMID:17020410 GO_REF:0000107 NCBI chrNW_004936706:1,816,561...1,829,638
Ensembl chrNW_004936706:1,816,571...1,829,692 		JBrowse link
G Fbxl15 F-box and leucine rich repeat protein 15 involved_in ISO PMID:21572392 UniProt PMID:21572392 RGD:8554771 NCBI chrNW_004936600:3,445,840...3,450,369
Ensembl chrNW_004936600:3,442,778...3,448,467 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:12756187) MGI PMID:12756187 NCBI chrNW_004936486:10,506,680...10,606,272
Ensembl chrNW_004936486:10,507,097...10,602,019 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 involved_in ISO (MGI:4457789|PMID:20582225) BHF-UCL PMID:20582225 MGI:4457789 NCBI chrNW_004936477:21,591,772...21,606,289
Ensembl chrNW_004936477:21,591,792...21,606,296 		JBrowse link
G Fgr FGR proto-oncogene, Src family tyrosine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16964445) Ensembl
MGI		 PMID:16964445 GO_REF:0000107 NCBI chrNW_004936474:11,897,998...11,919,153
Ensembl chrNW_004936474:11,896,914...11,919,190 		JBrowse link
G Fkrp fukutin related protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27109613), (PMID:29571322) Ensembl
MGI		 PMID:27109613 PMID:29571322 GO_REF:0000107 NCBI chrNW_004936664:577,109...586,848
Ensembl chrNW_004936664:578,126...586,795 		JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15509771) Ensembl
MGI		 PMID:15509771 GO_REF:0000107 NCBI chrNW_004936493:4,308,683...4,327,102
Ensembl chrNW_004936493:4,304,395...4,327,179 		JBrowse link
G Gata1 GATA binding protein 1 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:15005853) Ensembl
MGI		 PMID:15005853 GO_REF:0000107 NCBI chrNW_004936721:742,862...750,843
Ensembl chrNW_004936721:742,862...750,768 		JBrowse link
G Gla galactosidase alpha NOT|acts_upstream_of_or_within ISO (PMID:16697974) MGI PMID:16697974 NCBI chrNW_004936813:474,938...484,753
Ensembl chrNW_004936813:474,949...484,760 		JBrowse link
G Gpc3 glypican 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15936336) Ensembl
MGI		 PMID:15936336 GO_REF:0000107 NCBI chrNW_004936691:1,060,013...1,459,736
Ensembl chrNW_004936691:1,059,994...1,459,740 		JBrowse link
G Gpnmb glycoprotein nmb ISO RGD PMID:11746512 RGD:632991 NCBI chrNW_004936478:397,200...425,663
Ensembl chrNW_004936478:397,145...424,801 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of		 IEA
ISO		 (PMID:17181398) Ensembl
MGI		 PMID:17181398 GO_REF:0000107 NCBI chrNW_004936495:5,770,988...5,816,157
Ensembl chrNW_004936495:5,770,669...5,816,157 		JBrowse link
G Ibsp integrin binding sialoprotein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25464126) Ensembl
TreeGrafter
MGI		 PMID:25464126 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936905:316,459...323,446
Ensembl chrNW_004936905:316,459...323,446 		JBrowse link
G Ifitm5 interferon induced transmembrane protein 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18442316) Ensembl
TreeGrafter
MGI		 PMID:18442316 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936888:160,734...161,960
Ensembl chrNW_004936888:160,531...161,899 		JBrowse link
G Klf10 KLF transcription factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15657444) Ensembl
MGI		 PMID:15657444 GO_REF:0000107 NCBI chrNW_004936470:40,980,487...40,986,880
Ensembl chrNW_004936470:40,980,487...40,986,885 		JBrowse link
G Lgr4 leucine rich repeat containing G protein-coupled receptor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936540:5,752,319...5,846,074
Ensembl chrNW_004936540:5,752,197...5,845,159 		JBrowse link
G LOC101978323 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:1,899,686...1,904,104
Ensembl chrNW_004936646:1,900,259...1,904,104 		JBrowse link
G Lox lysyl oxidase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19458888) Ensembl
MGI		 PMID:19458888 GO_REF:0000107 NCBI chrNW_004936575:2,526,067...2,533,996
Ensembl chrNW_004936575:2,524,342...2,533,559 		JBrowse link
G Ltbp3 latent transforming growth factor beta binding protein 3 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:11790802) Ensembl
MGI		 PMID:11790802 GO_REF:0000107 NCBI chrNW_004936599:3,902,903...3,918,471
Ensembl chrNW_004936599:3,902,897...3,918,471 		JBrowse link
G Mepe matrix extracellular phosphoglycoprotein acts_upstream_of ISO (PMID:12421822) MGI PMID:12421822 NCBI chrNW_004936905:284,849...297,297 JBrowse link
G Minpp1 multiple inositol-polyphosphate phosphatase 1 NOT|involved_in ISO (MGI:1888425|PMID:10938126) UniProt PMID:10938126 MGI:1888425 NCBI chrNW_004936735:1,585,741...1,627,910
Ensembl chrNW_004936735:1,586,446...1,627,845 		JBrowse link
G Mmp13 matrix metallopeptidase 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936551:5,040,084...5,050,384
Ensembl chrNW_004936551:5,040,084...5,050,384 		JBrowse link
G Mtss1 MTSS I-BAR domain containing 1 acts_upstream_of_or_within ISO (PMID:21406566) MGI PMID:21406566 NCBI chrNW_004936470:22,963,498...23,117,923
Ensembl chrNW_004936470:22,963,496...23,117,226 		JBrowse link
G Nfe2 nuclear factor, erythroid 2 acts_upstream_of ISO (PMID:15005853) MGI PMID:15005853 NCBI chrNW_004936512:11,490,521...11,493,655
Ensembl chrNW_004936512:11,490,168...11,493,974 		JBrowse link
G Nfix nuclear factor I X involved_in ISO (PMID:17353270) MGI PMID:17353270 NCBI chrNW_004936659:2,065,410...2,136,898
Ensembl chrNW_004936659:2,065,458...2,136,889 		JBrowse link
G Phex phosphate regulating endopeptidase X-linked involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15843468) Ensembl
MGI		 PMID:15843468 GO_REF:0000107 NCBI chrNW_004936624:2,124,479...2,312,847
Ensembl chrNW_004936624:2,126,253...2,312,847 		JBrowse link
G Phospho1 phosphoethanolamine/phosphocholine phosphatase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:12,272,807...12,280,360
Ensembl chrNW_004936490:12,272,851...12,280,356 		JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21553379) Ensembl
MGI		 PMID:21553379 GO_REF:0000107 NCBI chrNW_004936508:9,550,201...9,559,493
Ensembl chrNW_004936508:9,550,224...9,559,499 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:1,165,159...1,270,138
Ensembl chrNW_004936512:1,163,615...1,270,255 		JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 acts_upstream_of_or_within ISO PMID:18519738 MGI PMID:18519738 RGD:8554572 NCBI chrNW_004936481:3,821,564...3,828,086 JBrowse link
G Pth parathyroid hormone involved_in
acts_upstream_of		 IEA
ISO		 (PMID:19968565) Ensembl
MGI		 PMID:19968565 GO_REF:0000107 NCBI chrNW_004936528:5,081,569...5,084,030
Ensembl chrNW_004936528:5,083,596...5,084,030 		JBrowse link
G Pth1r parathyroid hormone 1 receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11606467), (PMID:9832460) Ensembl
MGI		 PMID:9832460 PMID:11606467 GO_REF:0000107 NCBI chrNW_004936596:674,088...693,191
Ensembl chrNW_004936596:674,088...693,213 		JBrowse link
G Pthlh parathyroid hormone like hormone involved_in
NOT|acts_upstream_of_or_within		 IEA
ISO		 (PMID:11606467)
(PMID:19968565)		 InterPro
MGI		 PMID:11606467 PMID:19968565 GO_REF:0000002 NCBI chrNW_004936760:197,525...209,212
Ensembl chrNW_004936760:197,525...209,518 		JBrowse link
G Ptn pleiotrophin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12413943) Ensembl
MGI		 PMID:12413943 GO_REF:0000107 NCBI chrNW_004936592:1,706,979...1,806,345
Ensembl chrNW_004936592:1,707,693...1,730,617 		JBrowse link
G Rogdi rogdi atypical leucine zipper acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:38172607) MGI
Ensembl		 PMID:38172607 GO_REF:0000107 NCBI chrNW_004936530:4,756,069...4,761,484
Ensembl chrNW_004936530:4,753,751...4,761,695 		JBrowse link
G Ror2 receptor tyrosine kinase like orphan receptor 2 ISO RGD PMID:23337931 RGD:11537369 NCBI chrNW_004936796:630,307...675,157
Ensembl chrNW_004936796:630,756...674,279 		JBrowse link
G Rspo2 R-spondin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19213727) Ensembl
MGI		 PMID:19213727 GO_REF:0000107 NCBI chrNW_004936470:36,680,716...36,815,347
Ensembl chrNW_004936470:36,681,506...36,814,626 		JBrowse link
G Runx2 RUNX family transcription factor 2 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:21930712) Ensembl
MGI		 PMID:21930712 GO_REF:0000107 NCBI chrNW_004936476:14,695,965...14,818,246
Ensembl chrNW_004936476:14,695,965...14,905,157 		JBrowse link
G Sbds SBDS ribosome maturation factor involved_in ISO (PMID:17920346) UniProt PMID:17920346 NCBI chrNW_004936543:7,324,748...7,329,774 JBrowse link
G Sbno2 strawberry notch homolog 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23980096) Ensembl
MGI		 PMID:23980096 GO_REF:0000107 NCBI chrNW_004936588:509,244...556,424
Ensembl chrNW_004936588:505,948...541,831 		JBrowse link
G Slc24a3 solute carrier family 24 member 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:6104227|PMID:28602864) ARUK-UCL
Ensembl		 PMID:28602864 GO_REF:0000107 MGI:6104227 NCBI chrNW_004936485:637,715...1,085,860
Ensembl chrNW_004936485:639,532...1,085,830 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21788370)
(PMID:24585429)		 Ensembl
MGI		 PMID:21788370 PMID:24585429 GO_REF:0000107 NCBI chrNW_004936475:18,667,563...18,755,132
Ensembl chrNW_004936475:18,671,428...18,755,208 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:11371614) Ensembl
MGI		 PMID:11371614 GO_REF:0000107 NCBI chrNW_004936655:1,849,044...1,852,648
Ensembl chrNW_004936655:1,847,272...1,852,705 		JBrowse link
G Spp1 secreted phosphoprotein 1 involved_in ISO (PMID:12817751) MGI PMID:12817751 NCBI chrNW_004936905:148,956...156,023
Ensembl chrNW_004936905:148,945...156,079 		JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (PMID:19213727) MGI PMID:19213727 NCBI chrNW_004936486:3,473,877...3,660,565
Ensembl chrNW_004936486:3,473,843...3,660,576 		JBrowse link
G Tmem38b transmembrane protein 38B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27188440) Ensembl
MGI		 PMID:27188440 GO_REF:0000107 NCBI chrNW_004936559:6,501,890...6,553,446
Ensembl chrNW_004936559:6,500,190...6,553,513 		JBrowse link
G Wnt11 Wnt family member 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19213727) Ensembl
MGI		 PMID:19213727 GO_REF:0000107 NCBI chrNW_004936498:4,909,041...4,927,482
Ensembl chrNW_004936498:4,908,978...4,927,165 		JBrowse link
G Zmpste24 zinc metallopeptidase STE24 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23686339) Ensembl
MGI		 PMID:23686339 GO_REF:0000107 NCBI chrNW_004936474:22,035,059...22,077,846
Ensembl chrNW_004936474:22,034,801...22,077,986 		JBrowse link
bone mineralization involved in bone maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ano6 anoctamin 6 acts_upstream_of_or_within ISO (PMID:22936354) MGI PMID:22936354 NCBI chrNW_004936512:3,649,103...3,736,274
Ensembl chrNW_004936512:3,540,129...3,732,776 		JBrowse link
G Asxl2 ASXL transcriptional regulator 2 acts_upstream_of ISO (PMID:21490954) MGI PMID:21490954 NCBI chrNW_004936493:6,463,771...6,602,244
Ensembl chrNW_004936493:6,463,744...6,594,252 		JBrowse link
G Ccdc154 coiled-coil domain containing 154 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20121924) Ensembl
TreeGrafter
MGI		 PMID:20121924 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936694:2,468,281...2,475,901
Ensembl chrNW_004936694:2,468,281...2,475,487 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:25260930)
(PMID:22359666)		 MGI PMID:22359666 PMID:25260930 NCBI chrNW_004937067:194,375...246,607 JBrowse link
G Ift80 intraflagellar transport 80 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26996322) Ensembl
MGI		 PMID:26996322 GO_REF:0000107 NCBI chrNW_004936708:238,302...362,537
Ensembl chrNW_004936708:238,268...362,519 		JBrowse link
G Igf1 insulin like growth factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:11,709,623...11,784,028
Ensembl chrNW_004936492:11,709,222...11,778,351 		JBrowse link
G Lep leptin ISO RGD PMID:21353474 RGD:5128507 NCBI chrNW_004936479:15,394,966...15,411,334
Ensembl chrNW_004936479:15,394,966...15,411,334 		JBrowse link
G Phospho1 phosphoethanolamine/phosphocholine phosphatase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21272676) Ensembl
TreeGrafter
MGI		 PMID:21272676 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936490:12,272,807...12,280,360
Ensembl chrNW_004936490:12,272,851...12,280,356 		JBrowse link
G Snx10 sorting nexin 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25811986) Ensembl
MGI		 PMID:25811986 GO_REF:0000107 NCBI chrNW_004936478:3,048,801...3,113,610
Ensembl chrNW_004936478:3,048,691...3,114,876 		JBrowse link
negative regulation of bone mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahsg alpha 2-HS glycoprotein involved_in ISO
IEA		 RGD
Ensembl		 PMID:8702833 GO_REF:0000107 RGD:1626074 NCBI chrNW_004936578:3,332,934...3,339,903
Ensembl chrNW_004936578:3,332,934...3,339,903 		JBrowse link
G Bcor BCL6 corepressor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936502:6,764,043...6,812,194
Ensembl chrNW_004936502:6,764,907...6,792,916 		JBrowse link
G Ecm1 extracellular matrix protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:750,423...756,765
Ensembl chrNW_004936580:750,736...756,771 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (MGI:5607146|PMID:25479107), (MGI:6220772|PMID:30111653), (MGI:6294341|PMID:22510396) UniProt PMID:22510396 PMID:25479107 PMID:30111653 MGI:5607146 MGI:6220772 MGI:6294341 NCBI chrNW_004937067:194,375...246,607 JBrowse link
G Fgf23 fibroblast growth factor 23 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936606:4,555,034...4,561,961
Ensembl chrNW_004936606:4,555,034...4,561,961 		JBrowse link
G Gata1 GATA binding protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15005853) Ensembl
MGI		 PMID:15005853 GO_REF:0000107 NCBI chrNW_004936721:742,862...750,843
Ensembl chrNW_004936721:742,862...750,768 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936673:1,394,743...1,399,726
Ensembl chrNW_004936673:1,395,757...1,396,311 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17181398) Ensembl
MGI		 PMID:17181398 GO_REF:0000107 NCBI chrNW_004936495:5,770,988...5,816,157
Ensembl chrNW_004936495:5,770,669...5,816,157 		JBrowse link
G LOC101964209 C-C chemokine receptor type 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:177,774...183,186
Ensembl chrNW_004936596:177,812...183,186 		JBrowse link
G Ltbp3 latent transforming growth factor beta binding protein 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11790802) Ensembl
MGI		 PMID:11790802 GO_REF:0000107 NCBI chrNW_004936599:3,902,903...3,918,471
Ensembl chrNW_004936599:3,902,897...3,918,471 		JBrowse link
G Mepe matrix extracellular phosphoglycoprotein acts_upstream_of_or_within ISO (PMID:22766095)
(PMID:12421822), (PMID:15843468)		 MGI PMID:12421822 PMID:15843468 PMID:22766095 NCBI chrNW_004936905:284,849...297,297 JBrowse link
G Nfe2 nuclear factor, erythroid 2 acts_upstream_of_or_within ISO (PMID:15005853) MGI PMID:15005853 NCBI chrNW_004936512:11,490,521...11,493,655
Ensembl chrNW_004936512:11,490,168...11,493,974 		JBrowse link
G Ptk2b protein tyrosine kinase 2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936675:216,970...325,670
Ensembl chrNW_004936675:275,288...324,810 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11371614) Ensembl
MGI		 PMID:11371614 GO_REF:0000107 NCBI chrNW_004936655:1,849,044...1,852,648
Ensembl chrNW_004936655:1,847,272...1,852,705 		JBrowse link
G Srgn serglycin involved_in ISO (PMID:16870619) UniProt PMID:16870619 NCBI chrNW_004936521:9,319,114...9,332,655 JBrowse link
G Trpm4 transient receptor potential cation channel subfamily M member 4 ISO RGD PMID:23081848 RGD:10003033 NCBI chrNW_004936664:3,093,258...3,124,473
Ensembl chrNW_004936664:3,093,367...3,124,117 		JBrowse link
negative regulation of bone mineralization involved in bone maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grem1 gremlin 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936673:1,394,743...1,399,726
Ensembl chrNW_004936673:1,395,757...1,396,311 		JBrowse link
G LOC101974850 refilin-B-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936564:1,495,792...1,496,447 JBrowse link
G Pth parathyroid hormone involved_in ISO PMID:11604398 CAFA PMID:11604398 RGD:12793028 NCBI chrNW_004936528:5,081,569...5,084,030
Ensembl chrNW_004936528:5,083,596...5,084,030 		JBrowse link
G Rflnb refilin B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:24436304) MGI
TreeGrafter		 PMID:24436304 GO_REF:0000118 NCBI chrNW_004936538:7,226,570...7,233,203
Ensembl chrNW_004936538:7,226,570...7,233,185 		JBrowse link
positive regulation of bone mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:20,743,195...20,811,567
Ensembl chrNW_004936469:20,743,213...20,811,569 		JBrowse link
G Acvr2a activin A receptor type 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:29,195,329...29,273,237
Ensembl chrNW_004936469:29,194,908...29,273,196 		JBrowse link
G Acvr2b activin A receptor type 2B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:27,816,366...27,822,555
Ensembl chrNW_004936473:27,815,399...27,822,476 		JBrowse link
G Adgrv1 adhesion G protein-coupled receptor V1 involved_in ISO (MGI:6211994|PMID:22419726) UniProt PMID:22419726 MGI:6211994 NCBI chrNW_004936469:8,653,031...9,209,840 JBrowse link
G Adrb2 adrenoceptor beta 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15724149) Ensembl
MGI		 PMID:15724149 GO_REF:0000107 NCBI chrNW_004936504:5,985,407...5,987,453
Ensembl chrNW_004936504:5,985,960...5,987,210 		JBrowse link
G Alox5 arachidonate 5-lipoxygenase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936554:7,807,914...7,848,691
Ensembl chrNW_004936554:7,808,355...7,867,931 		JBrowse link
G Ano6 anoctamin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:3,649,103...3,736,274
Ensembl chrNW_004936512:3,540,129...3,732,776 		JBrowse link
G Atp2b1 ATPase plasma membrane Ca2+ transporting 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936507:6,525,302...6,631,003
Ensembl chrNW_004936507:6,523,199...6,630,606 		JBrowse link
G Atraid all-trans retinoic acid induced differentiation factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:5,333,151...5,338,157
Ensembl chrNW_004936493:5,333,169...5,338,116 		JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:12,428,765...12,439,570
Ensembl chrNW_004936485:12,428,710...12,439,454 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:14749725) RGD
Ensembl
MGI		 PMID:14749725 PMID:15352071 GO_REF:0000107 RGD:9068399 NCBI chrNW_004936697:1,054,237...1,061,468
Ensembl chrNW_004936697:1,056,636...1,061,468 		JBrowse link
G Bmp6 bone morphogenetic protein 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936534:4,707,658...4,871,865
Ensembl chrNW_004936534:4,709,064...4,871,023 		JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:71,965...143,940
Ensembl chrNW_004936530:71,920...143,940 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936804:52,435...115,289
Ensembl chrNW_004936804:48,947...115,412 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936687:2,346,601...2,595,283
Ensembl chrNW_004936687:2,503,777...2,597,522 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936726:1,543,263...1,711,422
Ensembl chrNW_004936726:1,543,245...1,704,541 		JBrowse link
G Ccn1 cellular communication network factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936608:152,174...155,123
Ensembl chrNW_004936608:151,838...155,358 		JBrowse link
G Cd276 CD276 molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15317945) Ensembl
MGI		 PMID:15317945 GO_REF:0000107 NCBI chrNW_004936471:32,864,778...32,892,044
Ensembl chrNW_004936471:32,864,781...32,892,095 		JBrowse link
G Csf1r colony stimulating factor 1 receptor ISO RGD PMID:18434589 RGD:151665814 NCBI chrNW_004936504:4,898,947...4,927,195
Ensembl chrNW_004936504:4,898,945...4,928,923 		JBrowse link
G Fam20c FAM20C golgi associated secretory pathway kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17369251), (PMID:22615579) Ensembl
MGI		 PMID:17369251 PMID:22615579 GO_REF:0000107 NCBI chrNW_004936754:596,878...649,585
Ensembl chrNW_004936754:596,872...653,098 		JBrowse link
G Fbn2 fibrillin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:1,535,629...1,757,386
Ensembl chrNW_004936504:1,535,624...1,757,435 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (PMID:20053668) MGI PMID:20053668 NCBI chrNW_004936477:21,591,772...21,606,289
Ensembl chrNW_004936477:21,591,792...21,606,296 		JBrowse link
G Fzd9 frizzled class receptor 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:2,707,846...2,709,819
Ensembl chrNW_004936543:2,707,840...2,709,498 		JBrowse link
G Gpm6b glycoprotein M6B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:3,332,856...3,496,178
Ensembl chrNW_004936470:3,332,859...3,496,615 		JBrowse link
G Isg15 ISG15 ubiquitin like modifier involved_in ISO (MGI:4943600|PMID:21402791) UniProt PMID:21402791 MGI:4943600 NCBI chrNW_004936737:2,043,383...2,044,761 JBrowse link
G Kl klotho involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936472:27,604,681...27,649,613
Ensembl chrNW_004936472:27,604,517...27,650,086 		JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISO (MGI:5285459|PMID:21652706) UniProt PMID:21652706 MGI:5285459 NCBI chrNW_004936469:7,060,480...7,225,497
Ensembl chrNW_004936469:7,060,480...7,204,661 		JBrowse link
G Nell1 neural EGFL like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936654:1,591,016...2,392,496
Ensembl chrNW_004936654:1,591,847...2,394,692 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:11,888,024...11,895,058
Ensembl chrNW_004936493:11,888,024...11,895,058 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:44,024,497...44,032,429
Ensembl chrNW_004936470:44,024,439...44,032,429 		JBrowse link
G P2rx7 purinergic receptor P2X 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12677010), (PMID:18519738) Ensembl
MGI		 PMID:12677010 PMID:18519738 GO_REF:0000107 NCBI chrNW_004936558:3,106,819...3,149,689
Ensembl chrNW_004936558:3,108,283...3,149,765 		JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936508:9,550,201...9,559,493
Ensembl chrNW_004936508:9,550,224...9,559,499 		JBrowse link
G Pla2g4a phospholipase A2 group IVA ISO RGD PMID:10807497 RGD:1642474 NCBI chrNW_004936481:3,559,377...3,689,797
Ensembl chrNW_004936481:3,559,358...3,689,833 		JBrowse link
G Pth parathyroid hormone involved_in ISO
IEA		 RGD
Ensembl		 PMID:15758479 PMID:22445539 GO_REF:0000107 RGD:7207452 RGD:7242906 NCBI chrNW_004936528:5,081,569...5,084,030
Ensembl chrNW_004936528:5,083,596...5,084,030 		JBrowse link
G Ptn pleiotrophin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936592:1,706,979...1,806,345
Ensembl chrNW_004936592:1,707,693...1,730,617 		JBrowse link
G Slc20a2 solute carrier family 20 member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936785:177,134...285,467
Ensembl chrNW_004936785:181,127...285,209 		JBrowse link
G Slc8a1 solute carrier family 8 member A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936508:10,894,918...11,256,084
Ensembl chrNW_004936508:10,968,656...11,253,070 		JBrowse link
G Smad3 SMAD family member 3 ISO rat gene expressed in mouse osteoblastic cell line MC3T3-E1; TGF-beta down-regulates this activity RGD PMID:12096832 RGD:727387 NCBI chrNW_004936471:27,080,662...27,185,861
Ensembl chrNW_004936471:27,080,575...27,189,793 		JBrowse link
G Tent5a terminal nucleotidyltransferase 5A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936510:8,813,977...8,820,909
Ensembl chrNW_004936510:8,814,292...8,816,929 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISO (PMID:19578371) UniProt PMID:19578371 NCBI chrNW_004936534:2,481,804...2,518,573
Ensembl chrNW_004936534:2,481,806...2,499,317 		JBrowse link
G Tmem119 transmembrane protein 119 involved_in ISO (PMID:20025746)
(MGI:4418582|PMID:20025746), (MGI:5700277|PMID:26207632)		 UniProt PMID:20025746 PMID:26207632 MGI:4418582 MGI:5700277 NCBI chrNW_004936769:513,695...515,769 JBrowse link
G Wnt10b Wnt family member 10B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15728361) Ensembl
MGI		 PMID:15728361 GO_REF:0000107 NCBI chrNW_004936512:6,768,240...6,774,172
Ensembl chrNW_004936512:6,768,240...6,774,172 		JBrowse link
G Wnt4 Wnt family member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:7,623,462...7,635,416
Ensembl chrNW_004936474:7,623,463...7,635,664 		JBrowse link
positive regulation of bone mineralization involved in bone maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn3 actinin alpha 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,033,854...3,046,364
Ensembl chrNW_004936599:3,029,202...3,046,385 		JBrowse link
G Asxl2 ASXL transcriptional regulator 2 acts_upstream_of_or_within ISO (PMID:21490954) MGI PMID:21490954 NCBI chrNW_004936493:6,463,771...6,602,244
Ensembl chrNW_004936493:6,463,744...6,594,252 		JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:12,428,765...12,439,570
Ensembl chrNW_004936485:12,428,710...12,439,454 		JBrowse link
regulation of bone mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankh ANKH inorganic pyrophosphate transport regulator involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10894769), (PMID:7276519) Ensembl
MGI		 PMID:7276519 PMID:10894769 GO_REF:0000107 NCBI chrNW_004936665:1,520,800...1,654,388
Ensembl chrNW_004936665:1,520,800...1,653,816 		JBrowse link
G Bglap bone gamma-carboxyglutamate protein involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936580:5,480,023...5,482,288
Ensembl chrNW_004936580:5,481,355...5,482,155 		JBrowse link
G Bmp2k BMP2 inducible kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11500515) Ensembl
MGI		 PMID:11500515 GO_REF:0000107 NCBI chrNW_004936676:2,361,878...2,496,006
Ensembl chrNW_004936676:2,361,732...2,494,701 		JBrowse link
G Comp cartilage oligomeric matrix protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21350216) Ensembl
MGI		 PMID:21350216 GO_REF:0000107 NCBI chrNW_004936596:2,544,389...2,551,155
Ensembl chrNW_004936596:2,544,389...2,551,164 		JBrowse link
G Ddr2 discoidin domain receptor tyrosine kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936831:799,948...946,139
Ensembl chrNW_004936831:865,965...946,139 		JBrowse link
G Ecm1 extracellular matrix protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20138147) Ensembl
TreeGrafter
MGI		 PMID:20138147 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936580:750,423...756,765
Ensembl chrNW_004936580:750,736...756,771 		JBrowse link
G Fgf23 fibroblast growth factor 23 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15579309) Ensembl
MGI		 PMID:15579309 GO_REF:0000107 NCBI chrNW_004936606:4,555,034...4,561,961
Ensembl chrNW_004936606:4,555,034...4,561,961 		JBrowse link
G Gja1 gap junction protein alpha 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21346198) Ensembl
MGI		 PMID:21346198 GO_REF:0000107 NCBI chrNW_004936658:3,920,043...3,932,987
Ensembl chrNW_004936658:3,920,043...3,932,987 		JBrowse link
G LOC101978323 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:1,899,686...1,904,104
Ensembl chrNW_004936646:1,900,259...1,904,104 		JBrowse link
G Matn1 matrilin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16877353) Ensembl
MGI		 PMID:16877353 GO_REF:0000107 NCBI chrNW_004936474:14,085,240...14,093,364
Ensembl chrNW_004936474:14,085,240...14,093,334 		JBrowse link
G Mgp matrix Gla protein involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936587:2,601,419...2,605,848
Ensembl chrNW_004936587:2,601,312...2,605,870 		JBrowse link
G Nbr1 NBR1 autophagy cargo receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:17,803,074...17,832,349
Ensembl chrNW_004936490:17,803,006...17,832,945 		JBrowse link
G Notum notum, palmitoleoyl-protein carboxylesterase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:30622831) MGI
Ensembl		 PMID:30622831 GO_REF:0000107 NCBI chrNW_004936594:5,458,825...5,465,135
Ensembl chrNW_004936594:5,457,687...5,465,162 		JBrowse link
G S1pr1 sphingosine-1-phosphate receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936748:1,244,962...1,250,093
Ensembl chrNW_004936748:1,245,538...1,250,093 		JBrowse link
G Sgms2 sphingomyelin synthase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936818:687,695...726,123
Ensembl chrNW_004936818:683,659...726,174 		JBrowse link
G Suv39h1 SUV39H1 histone lysine methyltransferase acts_upstream_of_or_within ISO (PMID:23695662) MGI PMID:23695662 NCBI chrNW_004936721:646,778...661,144
Ensembl chrNW_004936721:646,772...661,091 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936546:5,331,220...5,332,669
Ensembl chrNW_004936546:5,331,863...5,332,555 		JBrowse link
G Txlng taxilin gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:6,054,076...6,107,613
Ensembl chrNW_004936470:6,053,905...6,109,437 		JBrowse link
G Zmpste24 zinc metallopeptidase STE24 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23695662) Ensembl
MGI		 PMID:23695662 GO_REF:0000107 NCBI chrNW_004936474:22,035,059...22,077,846
Ensembl chrNW_004936474:22,034,801...22,077,986 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16121
    multicellular organismal process 7416
      ossification 424
        bone mineralization 134
          bone mineralization involved in bone maturation + 15
          negative regulation of bone mineralization + 19
          phosphatidylserine exposure on osteoblast involved in bone mineralization 0
          positive regulation of bone mineralization + 45
          regulation of bone mineralization + 80
Path 2
Term Annotations click to browse term
  biological_process 16121
    developmental process 6362
      anatomical structure development 5992
        tissue development 2122
          biomineral tissue development 176
            bone mineralization 134
              bone mineralization involved in bone maturation + 15
              negative regulation of bone mineralization + 19
              phosphatidylserine exposure on osteoblast involved in bone mineralization 0
              positive regulation of bone mineralization + 45
              regulation of bone mineralization + 80
paths to the root