Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:chromosome condensation
go back to main search page
Accession:GO:0030261 term browser browse the term
Definition:The progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division, or during apoptosis, in eukaryotic cells.
Synonyms:exact_synonym: eukaryotic chromosome condensation;   nuclear chromosome condensation
 broad_synonym: DNA condensation
 alt_id: GO:0000068



show annotations for term's descendants           Sort by:
 
chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Banf1 BAF nuclear assembly factor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:202,672,170...202,674,215
Ensembl chr 1:202,671,305...202,674,188
JBrowse link
G Banf2 BANF family member 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:131,387,107...131,442,837
Ensembl chr 3:131,388,130...131,442,832
JBrowse link
G Cdk1 cyclin-dependent kinase 1 IMP RGD PMID:15695611 RGD:2301352 NCBI chr20:19,266,226...19,281,417
Ensembl chr20:19,266,248...19,281,408
JBrowse link
G H1f0 H1.0 linker histone involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:110,592,834...110,594,694
Ensembl chr 7:110,592,208...110,594,694
JBrowse link
G H1f1 H1.1 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,366,268...41,367,011
Ensembl chr17:41,366,268...41,367,011
JBrowse link
G H1f10 H1.10 linker histone involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:120,440,515...120,444,705
Ensembl chr 4:120,440,870...120,441,448
JBrowse link
G H1f2 H1.2 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,391,106...41,392,611
Ensembl chr17:41,388,477...41,392,635
JBrowse link
G H1f4 H1.4 linker histone, cluster member involved_in TAS
IBA
PMID:21873635 RGD
GO_Central
PMID:12211017 PMID:21873635 RGD:1300396, RGD:13792537 NCBI chr17:41,486,634...41,487,293
Ensembl chr17:41,486,560...41,487,403
JBrowse link
G H1f5 H1.5 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:42,726,189...42,726,857
Ensembl chr17:42,726,127...42,769,160
JBrowse link
G H1f6 H1.6 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,427,365...41,428,109
Ensembl chr17:41,427,323...41,428,119
JBrowse link
G H1f7 H1.7 linker histone involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:129,408,521...129,409,888
Ensembl chr 7:129,408,359...129,409,930
JBrowse link
G H1f8 H1.8 linker histone involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:148,993,133...148,998,254
Ensembl chr 4:148,993,133...148,998,254
JBrowse link
G H4f3 H1.3 linker histone, cluster member involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,528,576...41,554,586
Ensembl chr17:41,529,667...41,552,334
JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 involved_in IBA
ISO
PMID:21873635
(PMID:12920187)
RGD PMID:12920187 PMID:21873635 RGD:13792537 NCBI chr10:79,913,525...79,914,321
Ensembl chr10:79,913,480...79,914,321
JBrowse link
G Prm1 protamine 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:4,871,909...4,872,155 JBrowse link
G Prm2 protamine 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:4,876,398...4,876,834
Ensembl chr10:4,873,372...4,877,026
JBrowse link
G Prm3 protamine 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:4,877,471...4,877,985
Ensembl chr10:4,877,471...4,877,985
JBrowse link
G Rock2 Rho-associated coiled-coil containing protein kinase 2 TAS RGD PMID:12126956 RGD:633802 NCBI chr 6:39,679,116...39,774,033
Ensembl chr 6:39,679,082...39,774,031
JBrowse link
G Smc5 structural maintenance of chromosomes 5 acts_upstream_of_or_within ISO MGI:5882566 (MGI:5882483|PMID:26919979) RGD PMID:26919979 MGI:5882483 NCBI chr 1:220,769,366...220,839,138
Ensembl chr 1:220,769,366...220,839,096
JBrowse link
G Top2a DNA topoisomerase II alpha acts_upstream_of_or_within ISO (MGI:2158879|PMID:11835580) RGD PMID:11835580 MGI:2158879 NCBI chr10:83,946,186...83,975,694
Ensembl chr10:83,945,735...83,976,874
JBrowse link
apoptotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acin1 apoptotic chromatin condensation inducer 1 involved_in ISO (PMID:10490026) RGD PMID:10490026 NCBI chr15:28,102,112...28,147,001
Ensembl chr15:28,102,112...28,147,001
JBrowse link
G Dffb DNA fragmentation factor subunit beta involved_in ISO
IEA
(PMID:10959840)
GO_REF:0000107
RGD
Ensembl
PMID:10959840 GO_REF:0000107 NCBI chr 5:164,522,446...164,534,733
Ensembl chr 5:164,522,463...164,534,628
JBrowse link
G Ern2 endoplasmic reticulum to nucleus signaling 2 involved_in ISO (PMID:11175748) RGD PMID:11175748 NCBI chr 1:176,726,454...176,743,289
Ensembl chr 1:176,726,454...176,743,289
JBrowse link
G Gper1 G protein-coupled estrogen receptor 1 involved_in IDA PMID:23907461 UniProt PMID:23907461 RGD:8553942 NCBI chr12:15,217,217...15,222,679
Ensembl chr12:15,217,442...15,221,889
JBrowse link
G Top2a DNA topoisomerase II alpha involved_in IBA
ISO
IEA
PMID:21873635
(PMID:10959840)
GO_REF:0000107
RGD
Ensembl
PMID:10959840 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr10:83,946,186...83,975,694
Ensembl chr10:83,945,735...83,976,874
JBrowse link
meiotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mastl microtubule associated serine/threonine kinase-like involved_in ISO (PMID:23843240) RGD PMID:23843240 NCBI chr17:85,250,512...85,287,479
Ensembl chr17:85,251,997...85,287,353
JBrowse link
G Ncapd2 non-SMC condensin I complex, subunit D2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:157,968,814...157,992,314
Ensembl chr 4:157,968,815...157,992,020
JBrowse link
G Ncapd3 non-SMC condensin II complex, subunit D3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:25,437,067...25,506,375
Ensembl chr 8:25,437,123...25,506,373
JBrowse link
G Ncaph non-SMC condensin I complex, subunit H acts_upstream_of_or_within
involved_in
ISO (MGI:5317363|PMID:21795393)
MGI:1289164 (MGI:5784807|PMID:25961503)
RGD PMID:21795393 PMID:25961503 MGI:5317363 MGI:5784807 NCBI chr 3:114,371,937...114,399,223
Ensembl chr 3:114,371,941...114,399,180
JBrowse link
G Ncaph2 non-SMC condensin II complex, subunit H2 involved_in IBA
ISO
IEA
PMID:21873635
(MGI:5784807|PMID:25961503)
GO_REF:0000107
RGD
Ensembl
PMID:25961503 PMID:21873635 GO_REF:0000107 MGI:5784807, RGD:13792537 NCBI chr 7:120,422,926...120,439,942
Ensembl chr 7:120,422,956...120,439,938
JBrowse link
G Smc2 structural maintenance of chromosomes 2 acts_upstream_of_or_within ISO (MGI:5317363|PMID:21795393) RGD PMID:21795393 MGI:5317363 NCBI chr 5:66,806,882...66,853,478
Ensembl chr 5:66,807,011...66,853,242
JBrowse link
G Smc4 structural maintenance of chromosomes 4 acts_upstream_of_or_within ISO (MGI:5317363|PMID:21795393) RGD PMID:21795393 MGI:5317363 NCBI chr 2:153,240,243...153,268,722
Ensembl chr 2:153,240,283...153,271,571
JBrowse link
mitotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap8 A-kinase anchoring protein 8 acts_upstream_of_or_within ISO (MGI:3512088|PMID:12082153) RGD PMID:12082153 MGI:3512088 NCBI chr 7:11,316,224...11,332,523
Ensembl chr 7:11,316,228...11,332,399
JBrowse link
G Akap8l A-kinase anchoring protein 8 like involved_in ISO (PMID:11034899) RGD PMID:11034899 NCBI chr 7:11,332,671...11,362,287
Ensembl chr 7:11,332,672...11,362,275
JBrowse link
G Cdca5 cell division cycle associated 5 involved_in ISO (PMID:15837422) RGD PMID:15837422 NCBI chr 1:203,378,550...203,392,027
Ensembl chr 1:203,378,577...203,392,023
JBrowse link
G Chmp1a charged multivesicular body protein 1A acts_upstream_of_or_within ISO (PMID:11559747) RGD PMID:11559747 NCBI chr19:51,238,153...51,246,433
Ensembl chr19:51,238,160...51,246,436
JBrowse link
G Ncapd2 non-SMC condensin I complex, subunit D2 involved_in ISO
IBA
(PMID:11136719), (PMID:27737959)
PMID:21873635
RGD PMID:11136719 PMID:27737959 PMID:21873635 RGD:13792537 NCBI chr 4:157,968,814...157,992,314
Ensembl chr 4:157,968,815...157,992,020
JBrowse link
G Ncapd3 non-SMC condensin II complex, subunit D3 involved_in ISO
IBA
(PMID:14532007), (PMID:27737959)
PMID:21873635
RGD PMID:14532007 PMID:27737959 PMID:21873635 RGD:13792537 NCBI chr 8:25,437,067...25,506,375
Ensembl chr 8:25,437,123...25,506,373
JBrowse link
G Ncapg non-SMC condensin I complex, subunit G involved_in ISO
IBA
(PMID:11136719)
PMID:21873635
RGD PMID:11136719 PMID:21873635 RGD:13792537 NCBI chr14:65,404,235...65,432,902
Ensembl chr14:65,404,163...65,432,902
JBrowse link
G Ncaph non-SMC condensin I complex, subunit H involved_in IBA
ISO
PMID:21873635
(PMID:11136719), (PMID:11694586), (PMID:27737959)
RGD PMID:11136719 PMID:11694586 PMID:27737959 PMID:21873635 RGD:13792537 NCBI chr 3:114,371,937...114,399,223
Ensembl chr 3:114,371,941...114,399,180
JBrowse link
G Ncaph2 non-SMC condensin II complex, subunit H2 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5905517|PMID:27737959)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:27737959 GO_REF:0000024 GO_REF:0000107 MGI:5905517 NCBI chr 7:120,422,926...120,439,942
Ensembl chr 7:120,422,956...120,439,938
JBrowse link
G Nusap1 nucleolar and spindle associated protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(PMID:12963707)
RGD PMID:12963707 PMID:21873635 RGD:13792537 NCBI chr 3:106,603,273...106,633,624
Ensembl chr 3:106,603,289...106,633,624
JBrowse link
G Pam peptidylglycine alpha-amidating monooxygenase acts_upstream_of_or_within ISO (PMID:10601332) RGD PMID:10601332 NCBI chr 9:97,998,581...98,271,966
Ensembl chr 9:98,122,916...98,271,965
JBrowse link
G Phf13 PHD finger protein 13 involved_in IBA
ISO
PMID:21873635
(PMID:19638409)
RGD PMID:19638409 PMID:21873635 RGD:13792537 NCBI chr 5:162,494,574...162,501,350
Ensembl chr 5:162,494,573...162,501,350
JBrowse link
G Smc2 structural maintenance of chromosomes 2 involved_in ISO
IBA
(PMID:11136719)
PMID:21873635
RGD PMID:11136719 PMID:21873635 RGD:13792537 NCBI chr 5:66,806,882...66,853,478
Ensembl chr 5:66,807,011...66,853,242
JBrowse link
G Smc4 structural maintenance of chromosomes 4 involved_in ISO
IBA
(PMID:11136719)
PMID:21873635
RGD PMID:11136719 PMID:21873635 RGD:13792537 NCBI chr 2:153,240,243...153,268,722
Ensembl chr 2:153,240,283...153,271,571
JBrowse link
G Ttn titin involved_in ISO (PMID:9548712) RGD PMID:9548712 NCBI chr 3:61,652,432...61,924,912
Ensembl chr 3:61,652,439...61,924,741
JBrowse link
negative regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H3f3a H3.3 histone A acts_upstream_of_or_within ISO MGI:1101768 (MGI:5502235|PMID:23903189) RGD PMID:23903189 MGI:5502235 NCBI chr13:92,533,294...92,544,903
Ensembl chr13:92,533,298...92,544,908
JBrowse link
G H3f3b H3.3 histone B acts_upstream_of_or_within ISO MGI:1097686 (MGI:5502235|PMID:23903189) RGD PMID:23903189 MGI:5502235 NCBI chr10:101,256,488...101,258,712
Ensembl chr10:101,256,480...101,258,709
JBrowse link
negative regulation of mitotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz1b bromodomain adjacent to zinc finger domain, 1B involved_in ISO (PMID:15543136) RGD PMID:15543136 NCBI chr12:21,431,985...21,489,956
Ensembl chr12:21,431,985...21,490,426
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (PMID:15543136) RGD PMID:15543136 NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594
JBrowse link
positive regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ncapd2 non-SMC condensin I complex, subunit D2 involved_in ISO (PMID:17268547) RGD PMID:17268547 NCBI chr 4:157,968,814...157,992,314
Ensembl chr 4:157,968,815...157,992,020
JBrowse link
G Ncapg non-SMC condensin I complex, subunit G involved_in ISO (PMID:17268547) RGD PMID:17268547 NCBI chr14:65,404,235...65,432,902
Ensembl chr14:65,404,163...65,432,902
JBrowse link
G Ncaph non-SMC condensin I complex, subunit H involved_in ISO (PMID:17268547) RGD PMID:17268547 NCBI chr 3:114,371,937...114,399,223
Ensembl chr 3:114,371,941...114,399,180
JBrowse link
G Smc2 structural maintenance of chromosomes 2 involved_in ISO (PMID:17268547) RGD PMID:17268547 NCBI chr 5:66,806,882...66,853,478
Ensembl chr 5:66,807,011...66,853,242
JBrowse link
G Smc4 structural maintenance of chromosomes 4 involved_in ISO (PMID:17268547) RGD PMID:17268547 NCBI chr 2:153,240,243...153,268,722
Ensembl chr 2:153,240,283...153,271,571
JBrowse link
regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1 cyclin B1 IMP positive regulation RGD PMID:15291744 RGD:1578405 NCBI chr 2:31,912,190...31,921,163
Ensembl chr 2:31,912,193...31,921,172
JBrowse link
G Mcph1 microcephalin 1 acts_upstream_of_or_within ISO MGI:4332146 (MGI:4437500|PMID:20169082) RGD PMID:20169082 MGI:4437500 NCBI chr16:71,021,855...71,224,067
Ensembl chr16:71,024,588...71,224,122
JBrowse link
G Wapl WAPL cohesin release factor involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:5551791|MGI:5551807 (MGI:5544860|PMID:23975099)
RGD PMID:23975099 PMID:21873635 MGI:5544860, RGD:13792537 NCBI chr16:10,005,520...10,075,270
Ensembl chr16:10,004,941...10,073,510
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18734
    cellular process 17431
      cellular component organization or biogenesis 6532
        cellular component organization 6307
          organelle organization 3900
            chromosome organization 969
              chromosome condensation 47
                apoptotic chromosome condensation 5
                meiotic chromosome condensation 7
                mitotic chromosome condensation + 17
                negative regulation of chromosome condensation + 4
                positive regulation of chromosome condensation + 5
                rDNA chromatin condensation 0
                regulation of chromosome condensation + 12
paths to the root