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ONTOLOGY REPORT - ANNOTATIONS


Term:T cell differentiation
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Accession:GO:0030217 term browser browse the term
Definition:The process in which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex.
Comment:Note that the term 'thymocyte differentiation' was merged into this term because thymocytes are T cells, and thus the term was essentially redundant. Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'.
Synonyms:exact_synonym: T lymphocyte differentiation
 related_synonym: T cell development
 alt_id: GO:0042112;   GO:0046652


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T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of ISO (PMID:7731963)
(PMID:9478961)
MGI PMID:7731963 PMID:9478961 NCBI chrNW_004936530:2,217,713...2,224,070 JBrowse link
G Ascl2 achaete-scute family bHLH transcription factor 2 acts_upstream_of_or_within ISO (PMID:31539517) MGI PMID:31539517 NCBI chrNW_004936794:567,462...569,195
Ensembl chrNW_004936794:568,567...569,139
JBrowse link
G Bcl11a BCL11 transcription factor A acts_upstream_of_or_within ISO (PMID:12717432) MGI PMID:12717432 NCBI chrNW_004936491:6,021,340...6,118,103
Ensembl chrNW_004936491:6,021,343...6,118,568
JBrowse link
G Bcl2 BCL2 apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:8170972)
(PMID:9215624)
Ensembl
MGI
PMID:8170972 PMID:9215624 GO_REF:0000107 NCBI chrNW_004936497:2,209,136...2,373,580
Ensembl chrNW_004936497:2,210,334...2,210,921
JBrowse link
G Cacnb4 calcium voltage-gated channel auxiliary subunit beta 4 NOT|acts_upstream_of_or_within ISO (PMID:17028169) MGI PMID:17028169 NCBI chrNW_004936469:25,494,820...25,745,783
Ensembl chrNW_004936469:25,494,883...25,740,223
JBrowse link
G Cd4 CD4 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936709:997,776...1,022,791
Ensembl chrNW_004936709:997,750...1,022,884
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936496:12,381,225...12,505,121
Ensembl chrNW_004936496:12,381,126...12,505,150
JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:14608382) Ensembl
MGI
PMID:14608382 GO_REF:0000107 NCBI chrNW_004936473:29,999,542...30,034,610
Ensembl chrNW_004936473:29,999,562...30,038,293
JBrowse link
G Dll4 delta like canonical Notch ligand 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:4,320,235...4,330,251
Ensembl chrNW_004936471:4,320,933...4,330,253
JBrowse link
G Egr1 early growth response 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12165491) Ensembl
MGI
PMID:12165491 GO_REF:0000107 NCBI chrNW_004936531:7,625,956...7,629,041
Ensembl chrNW_004936531:7,625,892...7,629,749
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:23169635) MGI PMID:23169635 NCBI chrNW_004937067:194,375...246,607 JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:32610127) Ensembl
MGI
PMID:32610127 GO_REF:0000107 NCBI chrNW_004936493:4,308,683...4,327,102
Ensembl chrNW_004936493:4,304,395...4,327,179
JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:2017177)
(PMID:7956841)
MGI
Ensembl
PMID:2017177 PMID:7956841 GO_REF:0000107 NCBI chrNW_004936484:6,780,692...6,800,883
Ensembl chrNW_004936484:6,780,692...6,800,966
JBrowse link
G Gpr89a G protein-coupled receptor 89A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936867:388,801...426,135 JBrowse link
G Hmga1 high mobility group AT-hook 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15713121) Ensembl
MGI
PMID:15713121 GO_REF:0000107 NCBI chrNW_004936476:24,795,854...24,803,138
Ensembl chrNW_004936476:24,795,877...24,801,567
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (PMID:7923373) MGI PMID:7923373 NCBI chrNW_004936686:1,459,582...1,556,478
Ensembl chrNW_004936686:1,462,145...1,556,451
JBrowse link
G Ikzf3 IKAROS family zinc finger 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:14,939,693...15,025,728
Ensembl chrNW_004936490:14,939,776...15,025,728
JBrowse link
G Il7r interleukin 7 receptor acts_upstream_of_or_within ISO (PMID:9215624) MGI PMID:9215624 NCBI chrNW_004936518:5,815,820...5,842,571 JBrowse link
G Itpkb inositol-trisphosphate 3-kinase B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:14517551) Ensembl
MGI
PMID:14517551 GO_REF:0000107 NCBI chrNW_004936526:3,378,046...3,477,177
Ensembl chrNW_004936526:3,376,786...3,477,554
JBrowse link
G Jag2 jagged canonical Notch ligand 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936621:363,489...380,616
Ensembl chrNW_004936621:366,616...380,618
JBrowse link
G Kat7 lysine acetyltransferase 7 involved_in ISO (MGI:6393224|PMID:27733580) GO_Central PMID:27733580 MGI:6393224 NCBI chrNW_004936490:11,775,224...11,805,489
Ensembl chrNW_004936490:11,772,046...11,805,759
JBrowse link
G Kdelr1 KDEL endoplasmic reticulum protein retention receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:26438836) Ensembl
MGI
PMID:26438836 GO_REF:0000107 NCBI chrNW_004936664:2,502,766...2,509,863
Ensembl chrNW_004936664:2,500,846...2,509,920
JBrowse link
G Kit KIT proto-oncogene, receptor tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936482:17,162,854...17,238,319
Ensembl chrNW_004936482:17,162,950...17,238,274
JBrowse link
G Lck LCK proto-oncogene, Src family tyrosine kinase involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:15,293,115...15,314,072
Ensembl chrNW_004936474:15,305,050...15,313,668
JBrowse link
G Lep leptin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:15,394,966...15,411,334
Ensembl chrNW_004936479:15,394,966...15,411,334
JBrowse link
G Lepr leptin receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936591:5,771,371...5,846,177
Ensembl chrNW_004936591:5,774,326...5,836,444
JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936823:283,207...290,970
Ensembl chrNW_004936823:283,205...290,986
JBrowse link
G Lmbr1l limb development membrane protein 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:6,892,798...6,910,576
Ensembl chrNW_004936512:6,892,801...6,910,576
JBrowse link
G LOC101958024 mucin-19 acts_upstream_of_or_within ISO (PMID:31539517) MGI PMID:31539517 NCBI chrNW_004936607:418,290...443,988 JBrowse link
G LOC101960702 lysosomal acid lipase/cholesteryl ester hydrolase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936601:4,975,296...5,008,938
Ensembl chrNW_004936601:4,975,211...5,008,962
JBrowse link
G LOC101971458 tyrosine-protein kinase ZAP-70 involved_in
acts_upstream_of
IEA
ISO
(PMID:9208839) Ensembl
MGI
PMID:9208839 GO_REF:0000107 NCBI chrNW_004936744:1,000,105...1,012,712
Ensembl chrNW_004936744:1,000,105...1,012,433
JBrowse link
G LOC106145247 E3 ubiquitin-protein ligase DTX1 acts_upstream_of ISO (PMID:12794108) MGI PMID:12794108 NCBI chrNW_004936668:3,006,539...3,021,066 JBrowse link
G Nfatc3 nuclear factor of activated T cells 3 acts_upstream_of_or_within ISO (PMID:9768749) MGI PMID:9768749 NCBI chrNW_004936475:18,462,424...18,557,832
Ensembl chrNW_004936475:18,462,298...18,555,220
JBrowse link
G Nfkbiz NFKB inhibitor zeta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936630:1,601,006...1,633,844
Ensembl chrNW_004936630:1,601,010...1,632,745
JBrowse link
G Nhej1 non-homologous end joining factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936569:1,494,783...1,578,587
Ensembl chrNW_004936569:1,495,446...1,578,590
JBrowse link
G Nrarp NOTCH regulated ankyrin repeat protein involved_in
acts_upstream_of
IEA
ISO
(PMID:12794108) Ensembl
MGI
PMID:12794108 GO_REF:0000107 NCBI chrNW_004936669:702,825...705,009
Ensembl chrNW_004936669:702,853...703,197
JBrowse link
G Patz1 POZ/BTB and AT hook containing zinc finger 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16491076) Ensembl
MGI
PMID:16491076 GO_REF:0000107 NCBI chrNW_004936755:491,660...511,812
Ensembl chrNW_004936755:491,656...511,812
JBrowse link
G Pknox1 PBX/knotted 1 homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16314502) Ensembl
MGI
PMID:16314502 GO_REF:0000107 NCBI chrNW_004936500:1,018,414...1,055,221
Ensembl chrNW_004936500:1,015,954...1,055,215
JBrowse link
G Ppp3cb protein phosphatase 3 catalytic subunit beta involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12091710) Ensembl
MGI
PMID:12091710 GO_REF:0000107 NCBI chrNW_004936521:5,576,705...5,614,738
Ensembl chrNW_004936521:5,575,996...5,615,370
JBrowse link
G Prex1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21178006) Ensembl
MGI
PMID:21178006 GO_REF:0000107 NCBI chrNW_004936514:5,291,473...5,443,999
Ensembl chrNW_004936514:5,368,629...5,444,003
JBrowse link
G Ptpn2 protein tyrosine phosphatase non-receptor type 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936626:2,390,004...2,472,039
Ensembl chrNW_004936626:2,389,868...2,445,927
JBrowse link
G Ptpn22 protein tyrosine phosphatase non-receptor type 22 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:14752163) Ensembl
TreeGrafter
MGI
PMID:14752163 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936690:2,180,804...2,232,869
Ensembl chrNW_004936690:2,181,047...2,232,958
JBrowse link
G Ptprc protein tyrosine phosphatase receptor type C involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936567:5,266,653...5,378,464
Ensembl chrNW_004936567:5,267,615...5,378,258
JBrowse link
G Ptprk protein tyrosine phosphatase receptor type K ISO RGD PMID:17434290 RGD:15036800 NCBI chrNW_004936639:1,279,795...1,683,944
Ensembl chrNW_004936639:1,278,808...1,682,279
JBrowse link
G Rag2 recombination activating 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11980719), (PMID:14595002) Ensembl
MGI
PMID:11980719 PMID:14595002 GO_REF:0000107 NCBI chrNW_004936533:1,801,207...1,807,431
Ensembl chrNW_004936533:1,801,391...1,807,431
JBrowse link
G Rhoh ras homolog family member H involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936482:7,721,815...7,723,395
Ensembl chrNW_004936482:7,689,371...7,723,321
JBrowse link
G Runx2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:7862157) Ensembl
MGI
PMID:7862157 GO_REF:0000107 NCBI chrNW_004936476:14,695,965...14,818,246
Ensembl chrNW_004936476:14,695,965...14,905,157
JBrowse link
G Sp3 Sp3 transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12676787) Ensembl
MGI
PMID:12676787 GO_REF:0000107 NCBI chrNW_004936509:3,740,393...3,782,873
Ensembl chrNW_004936509:3,741,836...3,793,136
JBrowse link
G Tbx21 T-box transcription factor 21 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20399120) Ensembl
MGI
PMID:20399120 GO_REF:0000107 NCBI chrNW_004936490:13,546,405...13,558,635
Ensembl chrNW_004936490:13,546,292...13,558,635
JBrowse link
G Tcirg1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15294947) Ensembl
MGI
PMID:15294947 GO_REF:0000107 NCBI chrNW_004936599:2,070,211...2,079,169
Ensembl chrNW_004936599:2,066,847...2,079,206
JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17481928) Ensembl
MGI
PMID:17481928 GO_REF:0000107 NCBI chrNW_004936661:3,742,080...3,758,266
Ensembl chrNW_004936661:3,742,066...3,758,272
JBrowse link
G Traf3ip2 TRAF3 interacting protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936679:308,508...348,561
Ensembl chrNW_004936679:316,277...336,557
JBrowse link
G Vav1 vav guanine nucleotide exchange factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21178006) Ensembl
MGI
PMID:21178006 GO_REF:0000107 NCBI chrNW_004936588:4,058,312...4,107,330
Ensembl chrNW_004936588:4,058,343...4,107,109
JBrowse link
G Wnt10b Wnt family member 10B involved_in
acts_upstream_of
IEA
ISO
(PMID:19723499) Ensembl
MGI
PMID:19723499 GO_REF:0000107 NCBI chrNW_004936512:6,768,240...6,774,172
Ensembl chrNW_004936512:6,768,240...6,774,172
JBrowse link
alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18025176) Ensembl
MGI
PMID:18025176 GO_REF:0000107 NCBI chrNW_004936487:17,690,206...17,819,619
Ensembl chrNW_004936487:17,690,968...17,819,669
JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (PMID:18025176) MGI PMID:18025176 NCBI chrNW_004936481:9,823,790...9,847,291
Ensembl chrNW_004936481:9,824,392...9,847,104
JBrowse link
G Ada adenosine deaminase acts_upstream_of ISO (PMID:11067867), (PMID:12163459), (PMID:16670300)
(PMID:11067867), (PMID:16670300)
MGI PMID:11067867 PMID:12163459 PMID:16670300 NCBI chrNW_004936530:2,217,713...2,224,070 JBrowse link
G Anxa1 annexin A1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936503:9,124,314...9,142,372
Ensembl chrNW_004936503:9,124,264...9,142,413
JBrowse link
G Bcl11b BCL11 transcription factor B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12717433) Ensembl
MGI
PMID:12717433 GO_REF:0000107 NCBI chrNW_004936604:3,023,781...3,110,104
Ensembl chrNW_004936604:3,023,844...3,110,083
JBrowse link
G Blm BLM RecQ like helicase acts_upstream_of_or_within ISO (PMID:17210642) MGI PMID:17210642 NCBI chrNW_004936483:16,194,092...16,295,803
Ensembl chrNW_004936483:16,194,092...16,255,905
JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23334952) Ensembl
MGI
PMID:23334952 GO_REF:0000107 NCBI chrNW_004936592:4,728,371...4,833,830
Ensembl chrNW_004936592:4,737,011...4,834,664
JBrowse link
G Gli3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15855276) Ensembl
MGI
PMID:15855276 GO_REF:0000107 NCBI chrNW_004936478:17,129,922...17,403,630
Ensembl chrNW_004936478:17,126,911...17,403,011
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9462507) Ensembl
MGI
PMID:9462507 GO_REF:0000107 NCBI chrNW_004936818:453,635...569,194
Ensembl chrNW_004936818:453,635...567,469
JBrowse link
G LOC101971458 tyrosine-protein kinase ZAP-70 involved_in
acts_upstream_of
IEA
ISO
(PMID:9275205)
(PMID:7630421)
(PMID:9208839)
Ensembl
MGI
PMID:7630421 PMID:9208839 PMID:9275205 GO_REF:0000107 NCBI chrNW_004936744:1,000,105...1,012,712
Ensembl chrNW_004936744:1,000,105...1,012,433
JBrowse link
G Prr7 proline rich 7, synaptic involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936597:1,726,143...1,735,295
Ensembl chrNW_004936597:1,726,070...1,735,343
JBrowse link
G Rorc RAR related orphan receptor C acts_upstream_of_or_within ISO (PMID:15247480) MGI PMID:15247480 NCBI chrNW_004936580:1,997,640...2,020,649
Ensembl chrNW_004936580:1,997,640...2,020,649
JBrowse link
G Rpl22 ribosomal protein L22 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17555992) Ensembl
MGI
PMID:17555992 GO_REF:0000107 NCBI chrNW_004936623:1,052,197...1,059,529
Ensembl chrNW_004936623:1,052,182...1,061,614
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of
IEA
ISO
(PMID:10981962) Ensembl
MGI
PMID:10981962 GO_REF:0000107 NCBI chrNW_004936527:10,033,095...10,042,713
Ensembl chrNW_004936527:10,033,299...10,042,599
JBrowse link
G Tcf7 transcription factor 7 acts_upstream_of_or_within ISO (PMID:9462507) MGI PMID:9462507 NCBI chrNW_004936647:1,096,726...1,125,753
Ensembl chrNW_004936647:1,097,019...1,125,729
JBrowse link
alpha-beta T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rhoa ras homolog family member A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:1,000,050...1,045,655
Ensembl chrNW_004936529:999,935...1,045,681
JBrowse link
beta selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101971458 tyrosine-protein kinase ZAP-70 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9275205) Ensembl
MGI
PMID:9275205 GO_REF:0000107 NCBI chrNW_004936744:1,000,105...1,012,712
Ensembl chrNW_004936744:1,000,105...1,012,433
JBrowse link
G Rhoa ras homolog family member A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:1,000,050...1,045,655
Ensembl chrNW_004936529:999,935...1,045,681
JBrowse link
G Syk spleen associated tyrosine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9275205) Ensembl
MGI
PMID:9275205 GO_REF:0000107 NCBI chrNW_004936780:1,553,605...1,601,036
Ensembl chrNW_004936780:1,553,605...1,598,158
JBrowse link
CD4-positive or CD8-positive, alpha-beta T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Braf B-Raf proto-oncogene, serine/threonine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18228248) Ensembl
MGI
PMID:18228248 GO_REF:0000107 NCBI chrNW_004936592:4,728,371...4,833,830
Ensembl chrNW_004936592:4,737,011...4,834,664
JBrowse link
G Cyld CYLD lysine 63 deubiquitinase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16501569) Ensembl
MGI
PMID:16501569 GO_REF:0000107 NCBI chrNW_004936475:3,750,917...3,812,118
Ensembl chrNW_004936475:3,750,882...3,812,118
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936527:10,033,095...10,042,713
Ensembl chrNW_004936527:10,033,299...10,042,599
JBrowse link
CD4-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Armc5 armadillo repeat containing 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:28169274) Ensembl
MGI
PMID:28169274 GO_REF:0000107 NCBI chrNW_004936543:8,354,795...8,366,123
Ensembl chrNW_004936543:8,354,760...8,361,269
JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23334952) Ensembl
MGI
PMID:23334952 GO_REF:0000107 NCBI chrNW_004936592:4,728,371...4,833,830
Ensembl chrNW_004936592:4,737,011...4,834,664
JBrowse link
G Cd83 CD83 molecule involved_in
acts_upstream_of
IEA
ISO
(PMID:15322158) Ensembl
MGI
PMID:15322158 GO_REF:0000107 NCBI chrNW_004936552:637,471...654,422
Ensembl chrNW_004936552:637,043...656,452
JBrowse link
G Foxp3 forkhead box P3 involved_in
acts_upstream_of
IEA
ISO
(PMID:17028180) Ensembl
MGI
PMID:17028180 GO_REF:0000107 NCBI chrNW_004936721:1,118,376...1,125,282
Ensembl chrNW_004936721:1,118,782...1,132,308
JBrowse link
G Gimap1 GTPase, IMAP family member 1 acts_upstream_of_or_within ISO (PMID:20194894) MGI PMID:20194894 NCBI chrNW_004936527:6,214,556...6,226,723
Ensembl chrNW_004936527:6,223,819...6,225,988
Ensembl chrNW_004936527:6,223,819...6,225,988
JBrowse link
G Nkx2-3 NK2 homeobox 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10926756) Ensembl
MGI
PMID:10926756 GO_REF:0000107 NCBI chrNW_004936636:529,669...532,237
Ensembl chrNW_004936636:529,669...532,237
JBrowse link
G Pax1 paired box 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16093716) Ensembl
MGI
PMID:16093716 GO_REF:0000107 NCBI chrNW_004936620:3,765,481...3,773,779
Ensembl chrNW_004936620:3,765,444...3,776,467
JBrowse link
G Rsad2 radical S-adenosyl methionine domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936532:3,921,824...3,936,027
Ensembl chrNW_004936532:3,921,807...3,936,042
JBrowse link
G Sash3 SAM and SH3 domain containing 3 involved_in
acts_upstream_of
IEA
ISO
(PMID:16227612) Ensembl
MGI
PMID:16227612 GO_REF:0000107 NCBI chrNW_004936479:1,752,180...1,765,330
Ensembl chrNW_004936479:1,750,746...1,765,361
JBrowse link
G Satb1 SATB homeobox 1 acts_upstream_of_or_within ISO (PMID:10716941) MGI PMID:10716941 NCBI chrNW_004936473:10,906,059...11,001,007
Ensembl chrNW_004936473:10,904,989...11,001,051
JBrowse link
CD4-positive, alpha-beta T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctsl cathepsin L involved_in ISO (MGI:2655909|PMID:9545226) UniProt PMID:9545226 MGI:2655909 NCBI chrNW_004936680:3,047,355...3,050,640 JBrowse link
G Tox thymocyte selection associated high mobility group box involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936496:13,847,210...14,146,110
Ensembl chrNW_004936496:13,847,210...14,147,886
JBrowse link
CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp3 forkhead box P3 involved_in
acts_upstream_of
IEA
ISO
(PMID:16275384)
(PMID:16301745), (PMID:18573908)
Ensembl
MGI
PMID:16275384 PMID:16301745 PMID:18573908 GO_REF:0000107 NCBI chrNW_004936721:1,118,376...1,125,282
Ensembl chrNW_004936721:1,118,782...1,132,308
JBrowse link
G Fut7 fucosyltransferase 7 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18573908) Ensembl
MGI
PMID:18573908 GO_REF:0000107 NCBI chrNW_004936669:914,520...920,481
Ensembl chrNW_004936669:919,206...920,341
JBrowse link
G Il2rg interleukin 2 receptor subunit gamma involved_in
acts_upstream_of
IEA
ISO
(PMID:16227984) Ensembl
MGI
PMID:16227984 GO_REF:0000107 NCBI chrNW_004936762:487,414...491,028
Ensembl chrNW_004936762:487,380...491,044
JBrowse link
G Ncor1 nuclear receptor corepressor 1 acts_upstream_of_or_within ISO (PMID:11030619) MGI PMID:11030619 NCBI chrNW_004936821:382,756...538,254
Ensembl chrNW_004936821:382,383...536,223
JBrowse link
G Pla2g2d phospholipase A2 group IID involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19564598) Ensembl
MGI
PMID:19564598 GO_REF:0000107 NCBI chrNW_004936474:6,167,507...6,172,750
Ensembl chrNW_004936474:6,167,507...6,172,750
JBrowse link
CD4-positive, CD25-positive, alpha-beta regulatory T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tox thymocyte selection associated high mobility group box involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936496:13,847,210...14,146,110
Ensembl chrNW_004936496:13,847,210...14,147,886
JBrowse link
CD8-positive, alpha-beta intraepithelial T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr18 G protein-coupled receptor 18 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:25348153) Ensembl
MGI
PMID:25348153 GO_REF:0000107 NCBI chrNW_004936472:11,240,287...11,242,157
Ensembl chrNW_004936472:11,240,880...11,241,875
JBrowse link
CD8-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gimap1 GTPase, IMAP family member 1 acts_upstream_of_or_within ISO (PMID:20194894) MGI PMID:20194894 NCBI chrNW_004936527:6,214,556...6,226,723
Ensembl chrNW_004936527:6,223,819...6,225,988
Ensembl chrNW_004936527:6,223,819...6,225,988
JBrowse link
G Irf1 interferon regulatory factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11359801) Ensembl
MGI
PMID:11359801 GO_REF:0000107 NCBI chrNW_004936647:2,686,247...2,693,633
Ensembl chrNW_004936647:2,686,414...2,693,636
JBrowse link
G Otud5 OTU deubiquitinase 5 acts_upstream_of_or_within ISO (PMID:25470037) MGI PMID:25470037 NCBI chrNW_004936721:847,360...876,912
Ensembl chrNW_004936721:848,324...877,068
JBrowse link
G Pax1 paired box 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16093716) Ensembl
MGI
PMID:16093716 GO_REF:0000107 NCBI chrNW_004936620:3,765,481...3,773,779
Ensembl chrNW_004936620:3,765,444...3,776,467
JBrowse link
G Psmb11 proteasome subunit beta 11 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:31915251)
(PMID:17540904)
Ensembl
MGI
PMID:17540904 PMID:31915251 GO_REF:0000107 NCBI chrNW_004936722:1,279,867...1,281,232
Ensembl chrNW_004936722:1,280,042...1,280,923
JBrowse link
G Satb1 SATB homeobox 1 acts_upstream_of_or_within ISO (PMID:10716941), (PMID:15814699) MGI PMID:10716941 PMID:15814699 NCBI chrNW_004936473:10,906,059...11,001,007
Ensembl chrNW_004936473:10,904,989...11,001,051
JBrowse link
G Tnfsf8 TNF superfamily member 8 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16177108) Ensembl
TreeGrafter
MGI
PMID:16177108 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936487:4,057,637...4,081,207
Ensembl chrNW_004936487:4,057,643...4,081,207
JBrowse link
CD8-positive, alpha-beta T cell differentiation involved in immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936473:18,825,969...18,833,179
Ensembl chrNW_004936473:18,825,942...18,833,179
JBrowse link
G Ifng interferon gamma acts_upstream_of_or_within ISO (PMID:17277142) MGI PMID:17277142 NCBI chrNW_004936545:6,139,130...6,144,543
Ensembl chrNW_004936545:6,139,116...6,148,452
JBrowse link
CD8-positive, alpha-beta T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2 apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:8170972) Ensembl
MGI
PMID:8170972 GO_REF:0000107 NCBI chrNW_004936497:2,209,136...2,373,580
Ensembl chrNW_004936497:2,210,334...2,210,921
JBrowse link
G Tox thymocyte selection associated high mobility group box involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936496:13,847,210...14,146,110
Ensembl chrNW_004936496:13,847,210...14,147,886
JBrowse link
CD8-positive, gamma-delta intraepithelial T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccr9 C-C motif chemokine receptor 9 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:25348153) Ensembl
MGI
PMID:25348153 GO_REF:0000107 NCBI chrNW_004936695:55,788...59,251
Ensembl chrNW_004936695:55,788...59,251
JBrowse link
G Gpr18 G protein-coupled receptor 18 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:25348153) Ensembl
MGI
PMID:25348153 GO_REF:0000107 NCBI chrNW_004936472:11,240,287...11,242,157
Ensembl chrNW_004936472:11,240,880...11,241,875
JBrowse link
cytotoxic T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd8a CD8 subunit alpha acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:1673361) MGI
TreeGrafter
PMID:1673361 GO_REF:0000118 NCBI chrNW_004936712:885,301...891,247
Ensembl chrNW_004936712:885,458...890,852
JBrowse link
DN2 thymocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccr6 C-C motif chemokine receptor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:16,669,297...16,689,451
Ensembl chrNW_004936489:16,669,297...16,689,451
JBrowse link
G Lig4 DNA ligase 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10911993), (PMID:9823897) Ensembl
MGI
PMID:9823897 PMID:10911993 GO_REF:0000107 NCBI chrNW_004936472:3,861,833...3,867,943
Ensembl chrNW_004936472:3,861,866...3,867,933
JBrowse link
G Rag2 recombination activating 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9875844) Ensembl
MGI
PMID:9875844 GO_REF:0000107 NCBI chrNW_004936533:1,801,207...1,807,431
Ensembl chrNW_004936533:1,801,391...1,807,431
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 acts_upstream_of_or_within ISO (PMID:9875844) MGI PMID:9875844 NCBI chrNW_004936469:2,248,367...2,495,215
Ensembl chrNW_004936469:2,248,039...2,495,226
JBrowse link
DN3 thymocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccr6 C-C motif chemokine receptor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:16,669,297...16,689,451
Ensembl chrNW_004936489:16,669,297...16,689,451
JBrowse link
DN4 thymocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18025176) Ensembl
MGI
PMID:18025176 GO_REF:0000107 NCBI chrNW_004936487:17,690,206...17,819,619
Ensembl chrNW_004936487:17,690,968...17,819,669
JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (PMID:18025176) MGI PMID:18025176 NCBI chrNW_004936481:9,823,790...9,847,291
Ensembl chrNW_004936481:9,824,392...9,847,104
JBrowse link
G Blm BLM RecQ like helicase acts_upstream_of_or_within ISO (PMID:17210642) MGI PMID:17210642 NCBI chrNW_004936483:16,194,092...16,295,803
Ensembl chrNW_004936483:16,194,092...16,255,905
JBrowse link
G Nfatc3 nuclear factor of activated T cells 3 involved_in ISO (MGI:3820023|PMID:17579027) UniProt PMID:17579027 MGI:3820023 NCBI chrNW_004936475:18,462,424...18,557,832
Ensembl chrNW_004936475:18,462,298...18,555,220
JBrowse link
extrathymic T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il15 interleukin 15 acts_upstream_of_or_within ISO (PMID:10704459) MGI PMID:10704459 NCBI chrNW_004936535:6,344,348...6,358,803
Ensembl chrNW_004936535:6,344,395...6,350,197
JBrowse link
G LOC101971454 butyrophilin-like protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:610,676...617,206 JBrowse link
gamma-delta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jag2 jagged canonical Notch ligand 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936621:363,489...380,616
Ensembl chrNW_004936621:366,616...380,618
JBrowse link
G Lck LCK proto-oncogene, Src family tyrosine kinase acts_upstream_of ISO (PMID:7807014) MGI PMID:7807014 NCBI chrNW_004936474:15,293,115...15,314,072
Ensembl chrNW_004936474:15,305,050...15,313,668
JBrowse link
G LOC101954516 signal transducer and activator of transcription 5B involved_in
acts_upstream_of
IEA
ISO
(PMID:15294943) Ensembl
MGI
PMID:15294943 GO_REF:0000107 NCBI chrNW_004936490:17,022,268...17,043,751
Ensembl chrNW_004936490:17,021,051...17,043,941
JBrowse link
G Ptprc protein tyrosine phosphatase receptor type C involved_in
acts_upstream_of
IEA
ISO
(PMID:7807014) Ensembl
MGI
PMID:7807014 GO_REF:0000107 NCBI chrNW_004936567:5,266,653...5,378,464
Ensembl chrNW_004936567:5,267,615...5,378,258
JBrowse link
G Sox13 SRY-box transcription factor 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936567:631,126...641,967
Ensembl chrNW_004936567:630,855...642,017
JBrowse link
G Syk spleen associated tyrosine kinase involved_in
acts_upstream_of
IEA
ISO
(PMID:8790395)
(PMID:7477352)
Ensembl
MGI
PMID:7477352 PMID:8790395 GO_REF:0000107 NCBI chrNW_004936780:1,553,605...1,601,036
Ensembl chrNW_004936780:1,553,605...1,598,158
JBrowse link
G Tcf7 transcription factor 7 involved_in ISO (MGI:6276541|PMID:30413363) UniProt PMID:30413363 MGI:6276541 NCBI chrNW_004936647:1,096,726...1,125,753
Ensembl chrNW_004936647:1,097,019...1,125,729
JBrowse link
immature T cell proliferation in thymus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase acts_upstream_of ISO (PMID:17210642) MGI PMID:17210642 NCBI chrNW_004936483:16,194,092...16,295,803
Ensembl chrNW_004936483:16,194,092...16,255,905
JBrowse link
G Clec4g C-type lectin domain family 4 member G involved_in
acts_upstream_of
IEA
ISO
(PMID:23487419) Ensembl
MGI
PMID:23487419 GO_REF:0000107 NCBI chrNW_004936588:4,737,278...4,740,750
Ensembl chrNW_004936588:4,738,182...4,740,750
JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 involved_in
acts_upstream_of
IEA
ISO
(PMID:16230479) Ensembl
MGI
PMID:16230479 GO_REF:0000107 NCBI chrNW_004936490:14,887,062...14,910,038
Ensembl chrNW_004936490:14,887,043...14,909,956
JBrowse link
G Foxp3 forkhead box P3 involved_in
acts_upstream_of
IEA
ISO
(PMID:16230479) Ensembl
MGI
PMID:16230479 GO_REF:0000107 NCBI chrNW_004936721:1,118,376...1,125,282
Ensembl chrNW_004936721:1,118,782...1,132,308
JBrowse link
G Ifnar2 interferon alpha and beta receptor subunit 2 acts_upstream_of_or_within ISO (PMID:11154225) MGI PMID:11154225 NCBI chrNW_004936500:9,060,975...9,091,618
Ensembl chrNW_004936500:9,060,182...9,091,661
JBrowse link
G Ripk2 receptor interacting serine/threonine kinase 2 involved_in
acts_upstream_of
IEA
ISO
(PMID:11894098) Ensembl
MGI
PMID:11894098 GO_REF:0000107 NCBI chrNW_004936544:3,606,925...3,653,248
Ensembl chrNW_004936544:3,606,879...3,655,532
JBrowse link
G Wnt4 Wnt family member 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18617424) Ensembl
MGI
PMID:18617424 GO_REF:0000107 NCBI chrNW_004936474:7,623,462...7,635,416
Ensembl chrNW_004936474:7,623,463...7,635,664
JBrowse link
memory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tsc1 TSC complex subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:25271321) Ensembl
MGI
PMID:25271321 GO_REF:0000107 NCBI chrNW_004936487:19,331,183...19,386,841
Ensembl chrNW_004936487:19,331,194...19,386,892
JBrowse link
negative regulation of alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI family zinc finger 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:17,129,922...17,403,630
Ensembl chrNW_004936478:17,126,911...17,403,011
JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936569:1,474,693...1,480,562
Ensembl chrNW_004936569:1,474,665...1,480,568
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10981962) Ensembl
MGI
PMID:10981962 GO_REF:0000107 NCBI chrNW_004936527:10,033,095...10,042,713
Ensembl chrNW_004936527:10,033,299...10,042,599
JBrowse link
negative regulation of CD4-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbfb core-binding factor subunit beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:17,537,273...17,589,383
Ensembl chrNW_004936475:17,537,236...17,589,330
JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:22473704) UniProt PMID:22473704 NCBI chrNW_004936472:25,236,728...25,246,585
Ensembl chrNW_004936472:25,236,728...25,246,580
JBrowse link
G Runx3 RUNX family transcription factor 3 involved_in ISO (MGI:3772948|PMID:18258917) UniProt PMID:18258917 MGI:3772948 NCBI chrNW_004936474:9,751,946...9,802,910
Ensembl chrNW_004936474:9,751,946...9,802,910
JBrowse link
negative regulation of CD8-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc4a2 solute carrier family 4 member 2 involved_in ISO (MGI:6840447|PMID:24515893) UniProt PMID:24515893 MGI:6840447 NCBI chrNW_004936527:6,485,566...6,499,901
Ensembl chrNW_004936527:6,485,511...6,499,924
JBrowse link
G Socs1 suppressor of cytokine signaling 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:9,312,965...9,315,593
Ensembl chrNW_004936530:9,312,965...9,316,165
JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:4,546,139...4,560,157
Ensembl chrNW_004936580:4,551,304...4,560,163
JBrowse link
negative regulation of immature T cell proliferation in thymus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936697:1,054,237...1,061,468
Ensembl chrNW_004936697:1,056,636...1,061,468
JBrowse link
G Clec4g C-type lectin domain family 4 member G involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23487419) Ensembl
MGI
PMID:23487419 GO_REF:0000107 NCBI chrNW_004936588:4,737,278...4,740,750
Ensembl chrNW_004936588:4,738,182...4,740,750
JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16230479) Ensembl
MGI
PMID:16230479 GO_REF:0000107 NCBI chrNW_004936490:14,887,062...14,910,038
Ensembl chrNW_004936490:14,887,043...14,909,956
JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936569:1,474,693...1,480,562
Ensembl chrNW_004936569:1,474,665...1,480,568
JBrowse link
G Tmem131l transmembrane 131 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936576:311,649...479,507
Ensembl chrNW_004936576:420,502...479,513
JBrowse link
negative regulation of memory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgl2 fibrinogen like 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:29341118) Ensembl
MGI
PMID:29341118 GO_REF:0000107 NCBI chrNW_004936479:20,619,955...20,625,416
Ensembl chrNW_004936479:20,619,931...20,652,981
JBrowse link
negative regulation of positive thymic T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptpn2 protein tyrosine phosphatase non-receptor type 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936626:2,390,004...2,472,039
Ensembl chrNW_004936626:2,389,868...2,445,927
JBrowse link
negative regulation of regulatory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd44 CD44 molecule (IN blood group) involved_in ISO (MGI:5688819|PMID:25065622) UniProt PMID:25065622 MGI:5688819 NCBI chrNW_004936533:2,949,026...3,033,166 JBrowse link
G Ctla4 cytotoxic T-lymphocyte associated protein 4 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936631:484,356...489,643
Ensembl chrNW_004936631:484,356...489,643
JBrowse link
G Hspb1 heat shock protein family B (small) member 1 ISO RGD PMID:30287503 RGD:38549580 NCBI chrNW_004936543:2,110,351...2,111,896
Ensembl chrNW_004936543:2,110,304...2,112,186
JBrowse link
G Irf1 interferon regulatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936647:2,686,247...2,693,633
Ensembl chrNW_004936647:2,686,414...2,693,636
JBrowse link
G Lag3 lymphocyte activating 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936709:1,041,519...1,048,630
Ensembl chrNW_004936709:1,041,530...1,047,280
JBrowse link
G Mdk midkine involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:2,687,825...2,690,292
Ensembl chrNW_004936562:2,687,825...2,689,484
JBrowse link
G Tnfsf4 TNF superfamily member 4 involved_in ISO (MGI:3806904|PMID:18713990) BHF-UCL PMID:18713990 MGI:3806904 NCBI chrNW_004936481:14,391,359...14,409,514 JBrowse link
negative regulation of T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd74 CD74 molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:7679955) Ensembl
MGI
PMID:7679955 GO_REF:0000107 NCBI chrNW_004936504:4,522,576...4,532,289
Ensembl chrNW_004936504:4,522,751...4,531,750
JBrowse link
G Ifnb1 interferon beta 1 involved_in ISO (PMID:20554961) UniProt PMID:20554961 NCBI chrNW_004936652:2,736,270...2,736,833 JBrowse link
G LOC106145247 E3 ubiquitin-protein ligase DTX1 acts_upstream_of_or_within ISO (PMID:12794108) MGI PMID:12794108 NCBI chrNW_004936668:3,006,539...3,021,066 JBrowse link
G Nrarp NOTCH regulated ankyrin repeat protein involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12794108) Ensembl
MGI
PMID:12794108 GO_REF:0000107 NCBI chrNW_004936669:702,825...705,009
Ensembl chrNW_004936669:702,853...703,197
JBrowse link
G Prdx2 peroxiredoxin 2 acts_upstream_of_or_within ISO (PMID:16290204) MGI PMID:16290204 NCBI chrNW_004936659:1,894,423...1,897,690 JBrowse link
negative regulation of T cell differentiation in thymus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936697:1,054,237...1,061,468
Ensembl chrNW_004936697:1,056,636...1,061,468
JBrowse link
G Foxj1 forkhead box J1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:1,284,799...1,288,898
Ensembl chrNW_004936594:1,284,781...1,289,361
JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936569:1,474,693...1,480,562
Ensembl chrNW_004936569:1,474,665...1,480,568
JBrowse link
G Nfkbid NFKB inhibitor delta acts_upstream_of_or_within ISO (PMID:11931770) MGI PMID:11931770 NCBI chrNW_004936570:464,513...471,333
Ensembl chrNW_004936570:463,974...471,344
JBrowse link
G Rag2 recombination activating 2 ISO RGD PMID:30206106 RGD:38508903 NCBI chrNW_004936533:1,801,207...1,807,431
Ensembl chrNW_004936533:1,801,391...1,807,431
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10981962) Ensembl
MGI
PMID:10981962 GO_REF:0000107 NCBI chrNW_004936527:10,033,095...10,042,713
Ensembl chrNW_004936527:10,033,299...10,042,599
JBrowse link
G Zc3h8 zinc finger CCCH-type containing 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936783:834,804...863,751
Ensembl chrNW_004936783:834,790...864,330
JBrowse link
negative regulation of T-helper 1 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl2 achaete-scute family bHLH transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936794:567,462...569,195
Ensembl chrNW_004936794:568,567...569,139
JBrowse link
G Il4r interleukin 4 receptor involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16424184) Ensembl
MGI
PMID:16424184 GO_REF:0000107 NCBI chrNW_004936501:11,025,590...11,058,807
Ensembl chrNW_004936501:11,025,567...11,058,818
JBrowse link
G Jak3 Janus kinase 3 involved_in ISO (MGI:3719947|PMID:16020505) BHF-UCL PMID:16020505 MGI:3719947 NCBI chrNW_004936596:3,212,593...3,224,426
Ensembl chrNW_004936596:3,212,593...3,224,048
JBrowse link
G Tnfsf4 TNF superfamily member 4 involved_in ISO (MGI:4942267|PMID:9670042) BHF-UCL PMID:9670042 MGI:4942267 NCBI chrNW_004936481:14,391,359...14,409,514 JBrowse link
negative regulation of T-helper 17 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl2 achaete-scute family bHLH transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936794:567,462...569,195
Ensembl chrNW_004936794:568,567...569,139
JBrowse link
G Foxp3 forkhead box P3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936721:1,118,376...1,125,282
Ensembl chrNW_004936721:1,118,782...1,132,308
JBrowse link
G Il2 interleukin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936662:1,594,953...1,599,625
Ensembl chrNW_004936662:1,594,953...1,599,625
JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:13,919,006...13,973,868
Ensembl chrNW_004936481:13,919,257...13,966,677
JBrowse link
G Rc3h2 ring finger and CCCH-type domains 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:11,341,663...11,393,275
Ensembl chrNW_004936487:11,341,700...11,389,859
JBrowse link
G Smad7 SMAD family member 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936497:13,894,586...13,921,978
Ensembl chrNW_004936497:13,894,580...13,922,065
JBrowse link
G Tbx21 T-box transcription factor 21 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:13,546,405...13,558,635
Ensembl chrNW_004936490:13,546,292...13,558,635
JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23034280) Ensembl
MGI
PMID:23034280 GO_REF:0000107 NCBI chrNW_004936580:4,546,139...4,560,157
Ensembl chrNW_004936580:4,551,304...4,560,163
JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:19,714,145...19,722,512
Ensembl chrNW_004936474:19,714,153...19,722,528
JBrowse link
negative regulation of T-helper 17 cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jak3 Janus kinase 3 involved_in ISO (PMID:20696842) UniProt PMID:20696842 NCBI chrNW_004936596:3,212,593...3,224,426
Ensembl chrNW_004936596:3,212,593...3,224,048
JBrowse link
G Lgals1 galectin 1 involved_in ISO (PMID:24752896) UniProt PMID:24752896 NCBI chrNW_004936492:3,407,704...3,411,197
Ensembl chrNW_004936492:3,407,049...3,411,222
JBrowse link
G Loxl3 lysyl oxidase like 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936556:745,798...765,926
Ensembl chrNW_004936556:745,798...765,918
JBrowse link
G Tbx21 T-box transcription factor 21 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:13,546,405...13,558,635
Ensembl chrNW_004936490:13,546,292...13,558,635
JBrowse link
G Tnfsf18 TNF superfamily member 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:14,499,495...14,508,074
Ensembl chrNW_004936481:14,499,577...14,508,017
JBrowse link
negative regulation of T-helper 2 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa1 annexin A1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936503:9,124,314...9,142,372
Ensembl chrNW_004936503:9,124,264...9,142,413
JBrowse link
G Ascl2 achaete-scute family bHLH transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936794:567,462...569,195
Ensembl chrNW_004936794:568,567...569,139
JBrowse link
G Bcl6 BCL6 transcription repressor involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12594267) Ensembl
MGI
PMID:12594267 GO_REF:0000107 NCBI chrNW_004936578:2,371,976...2,395,034
Ensembl chrNW_004936578:2,371,945...2,395,071
JBrowse link
G Hlx H2.0 like homeobox involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16424184) Ensembl
MGI
PMID:16424184 GO_REF:0000107 NCBI chrNW_004936650:1,416,825...1,422,595
Ensembl chrNW_004936650:1,416,812...1,422,588
JBrowse link
G Socs5 suppressor of cytokine signaling 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936508:5,531,002...5,588,022
Ensembl chrNW_004936508:5,531,002...5,587,549
JBrowse link
negative regulation of T-helper cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rc3h1 ring finger and CCCH-type domains 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15917799) Ensembl
MGI
PMID:15917799 GO_REF:0000107 NCBI chrNW_004936481:13,919,006...13,973,868
Ensembl chrNW_004936481:13,919,257...13,966,677
JBrowse link
negative T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Themis thymocyte selection associated involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936639:1,739,380...1,915,545
Ensembl chrNW_004936639:1,739,380...1,915,560
JBrowse link
negative thymic T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aire autoimmune regulator involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23382543) Ensembl
MGI
PMID:23382543 GO_REF:0000107 NCBI chrNW_004936500:125,589...137,071
Ensembl chrNW_004936500:125,795...137,056
JBrowse link
G Atg5 autophagy related 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23382543) Ensembl
MGI
PMID:23382543 GO_REF:0000107 NCBI chrNW_004936564:2,759,085...2,885,394
Ensembl chrNW_004936564:2,758,598...2,885,420
JBrowse link
G Ccr7 C-C motif chemokine receptor 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:15,575,764...15,579,766
Ensembl chrNW_004936490:15,575,764...15,579,757
JBrowse link
G Cd28 CD28 molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10429671) Ensembl
MGI
PMID:10429671 GO_REF:0000107 NCBI chrNW_004936631:335,411...363,407
Ensembl chrNW_004936631:335,411...363,407
JBrowse link
G Cd3e CD3e molecule acts_upstream_of_or_within ISO (PMID:7630421) MGI PMID:7630421 NCBI chrNW_004936542:3,379,361...3,390,677 JBrowse link
G Cd74 CD74 molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:7679955) Ensembl
MGI
PMID:7679955 GO_REF:0000107 NCBI chrNW_004936504:4,522,576...4,532,289
Ensembl chrNW_004936504:4,522,751...4,531,750
JBrowse link
G Dock2 dedicator of cytokinesis 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12871644) Ensembl
MGI
PMID:12871644 GO_REF:0000107 NCBI chrNW_004936609:4,695,202...5,099,038
Ensembl chrNW_004936609:4,695,628...5,099,038
JBrowse link
G Fas Fas cell surface death receptor acts_upstream_of_or_within ISO (PMID:10429671) MGI PMID:10429671 NCBI chrNW_004936735:209,369...234,582 JBrowse link
G Gli3 GLI family zinc finger 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:17,129,922...17,403,630
Ensembl chrNW_004936478:17,126,911...17,403,011
JBrowse link
G LOC101971458 tyrosine-protein kinase ZAP-70 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:7630421) Ensembl
MGI
PMID:7630421 GO_REF:0000107 NCBI chrNW_004936744:1,000,105...1,012,712
Ensembl chrNW_004936744:1,000,105...1,012,433
JBrowse link
G Mink1 misshapen like kinase 1 acts_upstream_of_or_within ISO (PMID:15608642) MGI PMID:15608642 NCBI chrNW_004936677:2,813,899...2,864,366
Ensembl chrNW_004936677:2,813,899...2,864,366
JBrowse link
G Ptprc protein tyrosine phosphatase receptor type C involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:8666928) Ensembl
MGI
PMID:8666928 GO_REF:0000107 NCBI chrNW_004936567:5,266,653...5,378,464
Ensembl chrNW_004936567:5,267,615...5,378,258
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936527:10,033,095...10,042,713
Ensembl chrNW_004936527:10,033,299...10,042,599
JBrowse link
G Spn sialophorin acts_upstream_of_or_within ISO (PMID:10429671) MGI PMID:10429671 NCBI chrNW_004936501:12,773,967...12,776,642 JBrowse link
NK T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936509:4,729,984...4,826,367
Ensembl chrNW_004936509:4,732,930...4,826,443
JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19620306) Ensembl
MGI
PMID:19620306 GO_REF:0000107 NCBI chrNW_004936493:4,308,683...4,327,102
Ensembl chrNW_004936493:4,304,395...4,327,179
JBrowse link
G Itk IL2 inducible T cell kinase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18292523) Ensembl
TreeGrafter
MGI
PMID:18292523 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936515:5,891,873...5,952,400
Ensembl chrNW_004936515:5,891,828...5,952,458
JBrowse link
G Psap prosaposin acts_upstream_of_or_within ISO (PMID:14684827) MGI PMID:14684827 NCBI chrNW_004936521:6,975,844...7,009,460
Ensembl chrNW_004936521:6,975,770...7,009,136
JBrowse link
G Stk17a serine/threonine kinase 17a involved_in ISO (PMID:26423156) MGI PMID:26423156 NCBI chrNW_004936478:18,658,800...18,688,883
Ensembl chrNW_004936478:18,658,791...18,689,445
JBrowse link
G Txk TXK tyrosine kinase acts_upstream_of_or_within ISO (PMID:18292523) MGI PMID:18292523 NCBI chrNW_004936482:14,190,409...14,231,690
Ensembl chrNW_004936482:14,190,409...14,245,943
JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:4,546,139...4,560,157
Ensembl chrNW_004936580:4,551,304...4,560,163
JBrowse link
G Znf683 zinc finger protein 683 acts_upstream_of_or_within ISO (PMID:22885984) MGI PMID:22885984 NCBI chrNW_004936474:10,851,249...10,859,092 JBrowse link
NK T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tox thymocyte selection associated high mobility group box involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936496:13,847,210...14,146,110
Ensembl chrNW_004936496:13,847,210...14,147,886
JBrowse link
positive regulation of alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within ISO (PMID:11067867), (PMID:16670300)
(PMID:11067867), (PMID:12163459), (PMID:16670300)
MGI PMID:11067867 PMID:12163459 PMID:16670300 NCBI chrNW_004936530:2,217,713...2,224,070 JBrowse link
G Gli3 GLI family zinc finger 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:17,129,922...17,403,630
Ensembl chrNW_004936478:17,126,911...17,403,011
JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936569:1,474,693...1,480,562
Ensembl chrNW_004936569:1,474,665...1,480,568
JBrowse link
G Itpkb inositol-trisphosphate 3-kinase B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15064401) Ensembl
MGI
PMID:15064401 GO_REF:0000107 NCBI chrNW_004936526:3,378,046...3,477,177
Ensembl chrNW_004936526:3,376,786...3,477,554
JBrowse link
G LOC101971458 tyrosine-protein kinase ZAP-70 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9275205)
(PMID:7630421)
(PMID:9208839)
Ensembl
MGI
PMID:7630421 PMID:9208839 PMID:9275205 GO_REF:0000107 NCBI chrNW_004936744:1,000,105...1,012,712
Ensembl chrNW_004936744:1,000,105...1,012,433
JBrowse link
G Nkap NFKB activating protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:10,024,674...10,041,738
Ensembl chrNW_004936479:10,024,705...10,041,590
JBrowse link
G Pnp purine nucleoside phosphorylase acts_upstream_of_or_within ISO (PMID:16964310) MGI PMID:16964310 NCBI chrNW_004936877:686,539...692,832 JBrowse link
G Rhoa ras homolog family member A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:1,000,050...1,045,655
Ensembl chrNW_004936529:999,935...1,045,681
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936527:10,033,095...10,042,713
Ensembl chrNW_004936527:10,033,299...10,042,599
JBrowse link
G Syk spleen associated tyrosine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9275205) Ensembl
MGI
PMID:9275205 GO_REF:0000107 NCBI chrNW_004936780:1,553,605...1,601,036
Ensembl chrNW_004936780:1,553,605...1,598,158
JBrowse link
positive regulation of CD4-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd83 CD83 molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15322158) Ensembl
MGI
PMID:15322158 GO_REF:0000107 NCBI chrNW_004936552:637,471...654,422
Ensembl chrNW_004936552:637,043...656,452
JBrowse link
G Foxp3 forkhead box P3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17028180) Ensembl
MGI
PMID:17028180 GO_REF:0000107 NCBI chrNW_004936721:1,118,376...1,125,282
Ensembl chrNW_004936721:1,118,782...1,132,308
JBrowse link
G Nckap1l NCK associated protein 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:11,683,330...11,734,423
Ensembl chrNW_004936512:11,683,321...11,734,391
JBrowse link
G Sash3 SAM and SH3 domain containing 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16227612) Ensembl
MGI
PMID:16227612 GO_REF:0000107 NCBI chrNW_004936479:1,752,180...1,765,330
Ensembl chrNW_004936479:1,750,746...1,765,361
JBrowse link
G Socs1 suppressor of cytokine signaling 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:9,312,965...9,315,593
Ensembl chrNW_004936530:9,312,965...9,316,165
JBrowse link
G Tnfsf4 TNF superfamily member 4 involved_in ISO (MGI:4819294|PMID:20639485) BHF-UCL PMID:20639485 MGI:4819294 NCBI chrNW_004936481:14,391,359...14,409,514 JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:4,546,139...4,560,157
Ensembl chrNW_004936580:4,551,304...4,560,163
JBrowse link
positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp3 forkhead box P3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16275384)
(PMID:12612578)
(PMID:16301745), (PMID:18573908)
Ensembl
MGI
PMID:12612578 PMID:16275384 PMID:16301745 PMID:18573908 GO_REF:0000107 NCBI chrNW_004936721:1,118,376...1,125,282
Ensembl chrNW_004936721:1,118,782...1,132,308
JBrowse link
G Il2rg interleukin 2 receptor subunit gamma involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16227984) Ensembl
MGI
PMID:16227984 GO_REF:0000107 NCBI chrNW_004936762:487,414...491,028
Ensembl chrNW_004936762:487,380...491,044
JBrowse link
G Klhl25 kelch like family member 25 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:12,001,111...12,033,158
Ensembl chrNW_004936483:12,000,514...12,009,705
JBrowse link
G LOC101969065 mamu class II histocompatibility antigen, DR alpha chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:540,225...544,968
Ensembl chrNW_004936727:540,217...545,036
JBrowse link
positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation involved in immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ifng interferon gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:6,139,130...6,144,543
Ensembl chrNW_004936545:6,139,116...6,148,452
JBrowse link
G Lgals9 galectin 9 involved_in ISO (PMID:20209097) UniProt PMID:20209097 NCBI chrNW_004936538:4,034,467...4,050,240 JBrowse link
positive regulation of CD8-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbfb core-binding factor subunit beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:17,537,273...17,589,383
Ensembl chrNW_004936475:17,537,236...17,589,330
JBrowse link
G Nckap1l NCK associated protein 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:11,683,330...11,734,423
Ensembl chrNW_004936512:11,683,321...11,734,391
JBrowse link
G Runx3 RUNX family transcription factor 3 involved_in ISO (MGI:3772948|PMID:18258917) UniProt PMID:18258917 MGI:3772948 NCBI chrNW_004936474:9,751,946...9,802,910
Ensembl chrNW_004936474:9,751,946...9,802,910
JBrowse link
positive regulation of cytotoxic T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,577,552...3,588,825
Ensembl chrNW_004936599:3,577,480...3,588,706
JBrowse link
G Tnfsf9 TNF superfamily member 9 ISO RGD PMID:19187795 RGD:2317344 NCBI chrNW_004936588:3,844,924...3,847,218 JBrowse link
positive regulation of gamma-delta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lck LCK proto-oncogene, Src family tyrosine kinase acts_upstream_of_or_within ISO (PMID:7807014) MGI PMID:7807014 NCBI chrNW_004936474:15,293,115...15,314,072
Ensembl chrNW_004936474:15,305,050...15,313,668
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936818:453,635...569,194
Ensembl chrNW_004936818:453,635...567,469
JBrowse link
G LOC101954516 signal transducer and activator of transcription 5B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15294943) Ensembl
MGI
PMID:15294943 GO_REF:0000107 NCBI chrNW_004936490:17,022,268...17,043,751
Ensembl chrNW_004936490:17,021,051...17,043,941
JBrowse link
G Nckap1l NCK associated protein 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:11,683,330...11,734,423
Ensembl chrNW_004936512:11,683,321...11,734,391
JBrowse link
G Ptprc protein tyrosine phosphatase receptor type C involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:7807014) Ensembl
MGI
PMID:7807014 GO_REF:0000107 NCBI chrNW_004936567:5,266,653...5,378,464
Ensembl chrNW_004936567:5,267,615...5,378,258
JBrowse link
G Sox13 SRY-box transcription factor 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936567:631,126...641,967
Ensembl chrNW_004936567:630,855...642,017
JBrowse link
G Syk spleen associated tyrosine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:7477352)
(PMID:8790395)
Ensembl
MGI
PMID:7477352 PMID:8790395 GO_REF:0000107 NCBI chrNW_004936780:1,553,605...1,601,036
Ensembl chrNW_004936780:1,553,605...1,598,158
JBrowse link
positive regulation of immature T cell proliferation in thymus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase acts_upstream_of_or_within ISO (PMID:17210642) MGI PMID:17210642 NCBI chrNW_004936483:16,194,092...16,295,803
Ensembl chrNW_004936483:16,194,092...16,255,905
JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936520:5,707,542...5,716,966
Ensembl chrNW_004936520:5,707,778...5,717,024
JBrowse link
G Foxp3 forkhead box P3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16230479) Ensembl
MGI
PMID:16230479 GO_REF:0000107 NCBI chrNW_004936721:1,118,376...1,125,282
Ensembl chrNW_004936721:1,118,782...1,132,308
JBrowse link
G Il1a interleukin 1 alpha involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936783:1,210,715...1,218,315
Ensembl chrNW_004936783:1,210,809...1,218,315
JBrowse link
G Il1b interleukin 1 beta involved_in ISO
IEA
RGD
TreeGrafter
PMID:8590311 GO_REF:0000118 RGD:7401228 NCBI chrNW_004936783:1,251,678...1,256,807
Ensembl chrNW_004936783:1,252,158...1,257,165
JBrowse link
G Ripk2 receptor interacting serine/threonine kinase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11894098) Ensembl
MGI
PMID:11894098 GO_REF:0000107 NCBI chrNW_004936544:3,606,925...3,653,248
Ensembl chrNW_004936544:3,606,879...3,655,532
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936527:10,033,095...10,042,713
Ensembl chrNW_004936527:10,033,299...10,042,599
JBrowse link
positive regulation of memory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd46 CD46 molecule involved_in ISO (PMID:12540904) UniProt PMID:12540904 NCBI chrNW_004936557:5,136,784...5,175,543 JBrowse link
G Il23a interleukin 23 subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:743,630...745,998
Ensembl chrNW_004936646:743,688...745,836
JBrowse link
G LOC101969065 mamu class II histocompatibility antigen, DR alpha chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:540,225...544,968
Ensembl chrNW_004936727:540,217...545,036
JBrowse link
G Pck1 phosphoenolpyruvate carboxykinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:361,872...367,005
Ensembl chrNW_004936530:361,872...367,005
JBrowse link
G Tnfsf4 TNF superfamily member 4 involved_in ISO (MGI:3806904|PMID:18713990) BHF-UCL PMID:18713990 MGI:3806904 NCBI chrNW_004936481:14,391,359...14,409,514 JBrowse link
positive regulation of NK T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:14557411) Ensembl
MGI
PMID:14557411 GO_REF:0000107 NCBI chrNW_004936549:5,964,240...6,205,245
Ensembl chrNW_004936549:5,965,143...6,204,379
JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:14557411) Ensembl
MGI
PMID:14557411 GO_REF:0000107 NCBI chrNW_004936588:1,223,646...1,262,577
Ensembl chrNW_004936588:1,222,466...1,262,676
JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16973387) Ensembl
MGI
PMID:16973387 GO_REF:0000107 NCBI chrNW_004936473:21,324,669...21,409,430
Ensembl chrNW_004936473:21,324,658...21,409,430
JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936612:389,877...570,595
Ensembl chrNW_004936612:395,177...570,595
JBrowse link
positive regulation of pro-T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zbtb1 zinc finger and BTB domain containing 1 involved_in ISO (MGI:5446979|PMID:22753936) UniProt PMID:22753936 MGI:5446979 NCBI chrNW_004936495:8,212,136...8,238,876 JBrowse link
positive regulation of regulatory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambra1 autophagy and beclin 1 regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:2,493,823...2,676,868
Ensembl chrNW_004936562:2,493,774...2,676,912
JBrowse link
G Bcl6 BCL6 transcription repressor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936578:2,371,976...2,395,034
Ensembl chrNW_004936578:2,371,945...2,395,071
JBrowse link
G Carmil2 capping protein regulator and myosin 1 linker 2 acts_upstream_of_or_within ISO (PMID:23793062) MGI PMID:23793062 NCBI chrNW_004936475:18,036,233...18,049,144
Ensembl chrNW_004936475:18,035,994...18,049,129
JBrowse link
G Cd46 CD46 molecule involved_in ISO (PMID:12540904) UniProt PMID:12540904 NCBI chrNW_004936557:5,136,784...5,175,543 JBrowse link
G Dusp10 dual specificity phosphatase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936650:679,650...718,867
Ensembl chrNW_004936650:679,647...720,038
JBrowse link
G Foxo3 forkhead box O3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936564:4,788,036...4,907,600
Ensembl chrNW_004936564:4,787,992...4,903,837
JBrowse link
G Foxp3 forkhead box P3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12522256), (PMID:15100250), (PMID:16769892), (PMID:17028180)
(PMID:15780990)
Ensembl
MGI
PMID:12522256 PMID:15100250 PMID:15780990 PMID:16769892 PMID:17028180 GO_REF:0000107 NCBI chrNW_004936721:1,118,376...1,125,282
Ensembl chrNW_004936721:1,118,782...1,132,308
JBrowse link
G Il2 interleukin 2 ISO RGD PMID:6233372 RGD:1600097 NCBI chrNW_004936662:1,594,953...1,599,625
Ensembl chrNW_004936662:1,594,953...1,599,625
JBrowse link
G Il4i1 interleukin 4 induced 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:3,674,612...3,715,036
Ensembl chrNW_004936664:3,675,805...3,686,262
JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,767,526...3,775,416
Ensembl chrNW_004936599:3,766,242...3,776,128
JBrowse link
G Lgals9 galectin 9 involved_in ISO (MGI:5688819|PMID:25065622) UniProt PMID:25065622 MGI:5688819 NCBI chrNW_004936538:4,034,467...4,050,240 JBrowse link
G LOC101960905 butyrophilin subfamily 2 member A2-like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936671:2,149,443...2,157,518
Ensembl chrNW_004936671:2,149,361...2,157,536
JBrowse link
G LOC101964865 complement receptor type 1 involved_in ISO (PMID:25742728) ARUK-UCL PMID:25742728 NCBI chrNW_004936557:5,185,831...5,284,999 JBrowse link
G Socs1 suppressor of cytokine signaling 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:9,312,965...9,315,593
Ensembl chrNW_004936530:9,312,965...9,316,165
JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:3,742,080...3,758,266
Ensembl chrNW_004936661:3,742,066...3,758,272
JBrowse link
positive regulation of T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within ISO (PMID:9478961)
(PMID:7731963)
MGI PMID:7731963 PMID:9478961 NCBI chrNW_004936530:2,217,713...2,224,070 JBrowse link
G Bad BCL2 associated agonist of cell death involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12431371) Ensembl
MGI
PMID:12431371 GO_REF:0000107 NCBI chrNW_004936599:4,924,349...4,933,683
Ensembl chrNW_004936599:4,924,789...4,933,368
JBrowse link
G Cd27 CD27 molecule involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936709:1,312,434...1,317,592
Ensembl chrNW_004936709:1,312,448...1,317,378
JBrowse link
G Cd74 CD74 molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9432982)
(PMID:7679955), (PMID:8598040)
Ensembl
MGI
PMID:7679955 PMID:8598040 PMID:9432982 GO_REF:0000107 NCBI chrNW_004936504:4,522,576...4,532,289
Ensembl chrNW_004936504:4,522,751...4,531,750
JBrowse link
G Cyld CYLD lysine 63 deubiquitinase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16501569) Ensembl
MGI
PMID:16501569 GO_REF:0000107 NCBI chrNW_004936475:3,750,917...3,812,118
Ensembl chrNW_004936475:3,750,882...3,812,118
JBrowse link
G Gata3 GATA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:6,780,692...6,800,883
Ensembl chrNW_004936484:6,780,692...6,800,966
JBrowse link
G Il12a interleukin 12A acts_upstream_of_or_within ISO (PMID:22968459) MGI PMID:22968459 NCBI chrNW_004936519:6,166,060...6,180,652
Ensembl chrNW_004936519:6,175,261...6,180,396
JBrowse link
G Il1rl2 interleukin 1 receptor like 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22968459) Ensembl
MGI
PMID:22968459 GO_REF:0000107 NCBI chrNW_004936713:893,020...932,406
Ensembl chrNW_004936713:893,769...930,889
JBrowse link
G Il2 interleukin 2 ISO RGD PMID:9352365 RGD:1600138 NCBI chrNW_004936662:1,594,953...1,599,625
Ensembl chrNW_004936662:1,594,953...1,599,625
JBrowse link
G Il2ra interleukin 2 receptor subunit alpha ISO RGD PMID:9352365 RGD:1600138 NCBI chrNW_004936484:8,514,333...8,555,392
Ensembl chrNW_004936484:8,544,062...8,555,332
JBrowse link
G Il36b interleukin 36 beta acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:22968459) MGI
TreeGrafter
Ensembl
PMID:22968459 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936783:1,384,796...1,388,507
Ensembl chrNW_004936783:1,384,796...1,388,020
JBrowse link
G Il7 interleukin 7 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12431371) Ensembl
MGI
PMID:12431371 GO_REF:0000107 NCBI chrNW_004936702:110,625...162,957
Ensembl chrNW_004936702:111,211...162,322
JBrowse link
G LOC101963772 HLA class II histocompatibility antigen, DM alpha chain acts_upstream_of_or_within ISO (PMID:8598040)
(PMID:8598041), (PMID:9432982)
(PMID:8638109)
MGI PMID:8598040 PMID:8598041 PMID:8638109 PMID:9432982 NCBI chrNW_004936476:25,836,163...25,840,191
Ensembl chrNW_004936476:25,836,142...25,840,197
JBrowse link
G LOC101968486 HLA class II histocompatibility antigen, DQ alpha 1 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:373,464...378,784 JBrowse link
G LOC101971458 tyrosine-protein kinase ZAP-70 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:7630421)
(PMID:9208839)
MGI
Ensembl
PMID:7630421 PMID:9208839 GO_REF:0000107 NCBI chrNW_004936744:1,000,105...1,012,712
Ensembl chrNW_004936744:1,000,105...1,012,433
JBrowse link
G Mdk midkine involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:2,687,825...2,690,292
Ensembl chrNW_004936562:2,687,825...2,689,484
JBrowse link
G Pik3r6 phosphoinositide-3-kinase regulatory subunit 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:1,953,372...1,983,765
Ensembl chrNW_004936595:1,953,375...1,986,150
JBrowse link
G Ptprc protein tyrosine phosphatase receptor type C involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:8666928) Ensembl
MGI
PMID:8666928 GO_REF:0000107 NCBI chrNW_004936567:5,266,653...5,378,464
Ensembl chrNW_004936567:5,267,615...5,378,258
JBrowse link
G Rag1 recombination activating 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936533:1,817,135...1,827,393
Ensembl chrNW_004936533:1,817,135...1,827,393
JBrowse link
G Rhoh ras homolog family member H involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936482:7,721,815...7,723,395
Ensembl chrNW_004936482:7,689,371...7,723,321
JBrowse link
G Wnt10b Wnt family member 10B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19723499) Ensembl
MGI
PMID:19723499 GO_REF:0000107 NCBI chrNW_004936512:6,768,240...6,774,172
Ensembl chrNW_004936512:6,768,240...6,774,172
JBrowse link
G Xbp1 X-box binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936657:2,891,171...2,895,409
Ensembl chrNW_004936657:2,891,907...2,896,174
JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 involved_in ISO (MGI:5300225|PMID:22201126) UniProt PMID:22201126 MGI:5300225 NCBI chrNW_004936495:8,212,136...8,238,876 JBrowse link
G Zmiz1 zinc finger MIZ-type containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:444,599...664,533
Ensembl chrNW_004936521:444,598...581,800
JBrowse link
positive regulation of T cell differentiation in thymus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within ISO (PMID:11067867), (PMID:12163459), (PMID:16670300)
(PMID:11067867), (PMID:16670300)
(PMID:11435465)
MGI PMID:11067867 PMID:11435465 PMID:12163459 PMID:16670300 NCBI chrNW_004936530:2,217,713...2,224,070 JBrowse link
G Adam8 ADAM metallopeptidase domain 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:19,389,925...19,403,577
Ensembl chrNW_004936486:19,391,324...19,402,332
JBrowse link
G Egr3 early growth response 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:6,347,446...6,393,784
Ensembl chrNW_004936555:6,356,691...6,393,825
Ensembl chrNW_004936555:6,356,691...6,393,825
JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936569:1,474,693...1,480,562
Ensembl chrNW_004936569:1,474,665...1,480,568
JBrowse link
G Il2rg interleukin 2 receptor subunit gamma involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9252128)
(PMID:9916699)
Ensembl
MGI
PMID:9252128 PMID:9916699 GO_REF:0000107 NCBI chrNW_004936762:487,414...491,028
Ensembl chrNW_004936762:487,380...491,044
JBrowse link
G Il7r interleukin 7 receptor acts_upstream_of_or_within ISO (PMID:9215626) MGI PMID:9215626 NCBI chrNW_004936518:5,815,820...5,842,571 JBrowse link
G Rasgrp1 RAS guanyl releasing protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:2,152,231...2,222,260
Ensembl chrNW_004936471:2,153,880...2,222,229
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936527:10,033,095...10,042,713
Ensembl chrNW_004936527:10,033,299...10,042,599
JBrowse link
G Tespa1 thymocyte expressed, positive selection associated 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936891:512,882...549,676
Ensembl chrNW_004936891:512,671...534,025
JBrowse link
G Vnn1 vanin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936560:701,857...729,516
Ensembl chrNW_004936560:701,892...729,526
JBrowse link
positive regulation of T-helper 1 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa1 annexin A1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936503:9,124,314...9,142,372
Ensembl chrNW_004936503:9,124,264...9,142,413
JBrowse link
G Ccl19 C-C motif chemokine ligand 19 involved_in ISO (MGI:3576832|PMID:15845453) BHF-UCL PMID:15845453 MGI:3576832 NCBI chrNW_004936524:2,765,271...2,767,259
Ensembl chrNW_004936524:2,765,267...2,767,385
JBrowse link
G Hlx H2.0 like homeobox involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16424184) Ensembl
MGI
PMID:16424184 GO_REF:0000107 NCBI chrNW_004936650:1,416,825...1,422,595
Ensembl chrNW_004936650:1,416,812...1,422,588
JBrowse link
G Ripk2 receptor interacting serine/threonine kinase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11894097) Ensembl
MGI
PMID:11894097 GO_REF:0000107 NCBI chrNW_004936544:3,606,925...3,653,248
Ensembl chrNW_004936544:3,606,879...3,655,532
JBrowse link
G Socs5 suppressor of cytokine signaling 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936508:5,531,002...5,588,022
Ensembl chrNW_004936508:5,531,002...5,587,549
JBrowse link
positive regulation of T-helper 17 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Malt1 MALT1 paracaspase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936497:5,854,361...5,910,719
Ensembl chrNW_004936497:5,853,870...5,904,266
JBrowse link
G Nfkbid NFKB inhibitor delta involved_in ISO (MGI:6142401|PMID:25282160) UniProt PMID:25282160 MGI:6142401 NCBI chrNW_004936570:464,513...471,333
Ensembl chrNW_004936570:463,974...471,344
JBrowse link
G Nfkbiz NFKB inhibitor zeta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936630:1,601,006...1,633,844
Ensembl chrNW_004936630:1,601,010...1,632,745
JBrowse link
G Nlrp3 NLR family pyrin domain containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936864:709,693...732,119
Ensembl chrNW_004936864:709,709...731,718
JBrowse link
positive regulation of T-helper 17 cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brd2 bromodomain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:25,807,179...25,818,914
Ensembl chrNW_004936476:25,807,163...25,818,899
JBrowse link
G Brd4 bromodomain containing 4 involved_in ISO (MGI:6106706|PMID:28262505) UniProt PMID:28262505 MGI:6106706 NCBI chrNW_004936596:5,176,682...5,246,102
Ensembl chrNW_004936596:5,177,147...5,246,518
JBrowse link
G Ep300 E1A binding protein p300 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:696,982...778,132
Ensembl chrNW_004936492:696,960...778,138
JBrowse link
G Il23a interleukin 23 subunit alpha involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936646:743,630...745,998
Ensembl chrNW_004936646:743,688...745,836
JBrowse link
positive regulation of T-helper 2 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il18 interleukin 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936612:2,306,963...2,325,086
Ensembl chrNW_004936612:2,306,875...2,325,189
JBrowse link
G Il4r interleukin 4 receptor involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16424184) Ensembl
MGI
PMID:16424184 GO_REF:0000107 NCBI chrNW_004936501:11,025,590...11,058,807
Ensembl chrNW_004936501:11,025,567...11,058,818
JBrowse link
G Il6 interleukin 6 acts_upstream_of_or_within ISO (PMID:12594267) MGI PMID:12594267 NCBI chrNW_004936549:7,015,595...7,016,246 JBrowse link
G Nlrp3 NLR family pyrin domain containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936864:709,693...732,119
Ensembl chrNW_004936864:709,709...731,718
JBrowse link
G Prkcz protein kinase C zeta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936737:1,303,502...1,383,135
Ensembl chrNW_004936737:1,303,887...1,321,944
JBrowse link
G Rara retinoic acid receptor alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:15,376,217...15,420,638
Ensembl chrNW_004936490:15,376,205...15,421,611
JBrowse link
G Tnfsf4 TNF superfamily member 4 involved_in ISO (MGI:4943387|PMID:18354165) BHF-UCL PMID:18354165 MGI:4943387 NCBI chrNW_004936481:14,391,359...14,409,514 JBrowse link
positive regulation of T-helper cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shb SH2 domain containing adaptor protein B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24645804) Ensembl
MGI
PMID:24645804 GO_REF:0000107 NCBI chrNW_004936524:5,698,101...5,832,801
Ensembl chrNW_004936524:5,701,566...5,834,539
JBrowse link
positive T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11b BCL11 transcription factor B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17998389) Ensembl
MGI
PMID:17998389 GO_REF:0000107 NCBI chrNW_004936604:3,023,781...3,110,104
Ensembl chrNW_004936604:3,023,844...3,110,083
JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23334952) Ensembl
MGI
PMID:23334952 GO_REF:0000107 NCBI chrNW_004936592:4,728,371...4,833,830
Ensembl chrNW_004936592:4,737,011...4,834,664
JBrowse link
G Themis thymocyte selection associated involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936639:1,739,380...1,915,545
Ensembl chrNW_004936639:1,739,380...1,915,560
JBrowse link
positive thymic T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd3d CD3d molecule involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936542:3,400,129...3,403,628
Ensembl chrNW_004936542:3,399,845...3,403,634
JBrowse link
G Cd74 CD74 molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:7679955), (PMID:8598040)
(PMID:9432982)
Ensembl
MGI
PMID:7679955 PMID:8598040 PMID:9432982 GO_REF:0000107 NCBI chrNW_004936504:4,522,576...4,532,289
Ensembl chrNW_004936504:4,522,751...4,531,750
JBrowse link
G Dock2 dedicator of cytokinesis 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12871644) Ensembl
MGI
PMID:12871644 GO_REF:0000107 NCBI chrNW_004936609:4,695,202...5,099,038
Ensembl chrNW_004936609:4,695,628...5,099,038
JBrowse link
G Itpkb inositol-trisphosphate 3-kinase B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15064401) Ensembl
MGI
PMID:15064401 GO_REF:0000107 NCBI chrNW_004936526:3,378,046...3,477,177
Ensembl chrNW_004936526:3,376,786...3,477,554
JBrowse link
G LOC101963772 HLA class II histocompatibility antigen, DM alpha chain acts_upstream_of_or_within ISO (PMID:8598040)
(PMID:8638109)
(PMID:8598041), (PMID:9432982)
MGI PMID:8598040 PMID:8598041 PMID:8638109 PMID:9432982 NCBI chrNW_004936476:25,836,163...25,840,191
Ensembl chrNW_004936476:25,836,142...25,840,197
JBrowse link
G LOC101971458 tyrosine-protein kinase ZAP-70 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:7630421) MGI
Ensembl
PMID:7630421 GO_REF:0000107 NCBI chrNW_004936744:1,000,105...1,012,712
Ensembl chrNW_004936744:1,000,105...1,012,433
JBrowse link
G Nfatc3 nuclear factor of activated T cells 3 involved_in ISO (MGI:3820023|PMID:17579027) UniProt PMID:17579027 MGI:3820023 NCBI chrNW_004936475:18,462,424...18,557,832
Ensembl chrNW_004936475:18,462,298...18,555,220
JBrowse link
G Ptprc protein tyrosine phosphatase receptor type C involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:8666928) Ensembl
MGI
PMID:8666928 GO_REF:0000107 NCBI chrNW_004936567:5,266,653...5,378,464
Ensembl chrNW_004936567:5,267,615...5,378,258
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936527:10,033,095...10,042,713
Ensembl chrNW_004936527:10,033,299...10,042,599
JBrowse link
G Srf serum response factor involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21098124) Ensembl
MGI
PMID:21098124 GO_REF:0000107 NCBI chrNW_004936476:16,779,941...16,789,499
Ensembl chrNW_004936476:16,782,233...16,789,130
JBrowse link
G Stk11 serine/threonine kinase 11 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21487392) Ensembl
MGI
PMID:21487392 GO_REF:0000107 NCBI chrNW_004936588:579,816...601,033
Ensembl chrNW_004936588:579,816...603,654
JBrowse link
pro-T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Flt3 fms related receptor tyrosine kinase 3 acts_upstream_of_or_within ISO (PMID:7621074) MGI PMID:7621074 NCBI chrNW_004936472:23,169,967...23,239,178
Ensembl chrNW_004936472:23,170,470...23,256,904
JBrowse link
G Gata3 GATA binding protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19934022) Ensembl
MGI
PMID:19934022 GO_REF:0000107 NCBI chrNW_004936484:6,780,692...6,800,883
Ensembl chrNW_004936484:6,780,692...6,800,966
JBrowse link
G Spi1 Spi-1 proto-oncogene involved_in ISO (MGI:6508514|PMID:30171019) ARUK-UCL PMID:30171019 MGI:6508514 NCBI chrNW_004936562:1,852,759...1,870,647
Ensembl chrNW_004936562:1,852,740...1,870,472
JBrowse link
regulation of alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankle1 ankyrin repeat and LEM domain containing 1 NOT|involved_in ISO (MGI:5800654|PMID:27010503) UniProt PMID:27010503 MGI:5800654 NCBI chrNW_004936596:3,568,810...3,573,506
Ensembl chrNW_004936596:3,569,814...3,573,344
JBrowse link
regulation of CD4-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sh3rf1 SH3 domain containing ring finger 1 involved_in ISO (MGI:6158776|PMID:27084103) UniProt PMID:27084103 MGI:6158776 NCBI chrNW_004936516:1,267,128...1,429,040
Ensembl chrNW_004936516:1,267,029...1,428,841
JBrowse link
regulation of CD8-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zbtb7b zinc finger and BTB domain containing 7B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18776904) Ensembl
MGI
PMID:18776904 GO_REF:0000107 NCBI chrNW_004936580:4,546,139...4,560,157
Ensembl chrNW_004936580:4,551,304...4,560,163
JBrowse link
regulation of extrathymic T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prdm1 PR/SET domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936564:2,594,362...2,690,680
Ensembl chrNW_004936564:2,667,660...2,690,683
JBrowse link
G Znf683 zinc finger protein 683 involved_in ISO (MGI:5779429|PMID:27102484) UniProt PMID:27102484 MGI:5779429 NCBI chrNW_004936474:10,851,249...10,859,092 JBrowse link
regulation of gamma-delta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr3 early growth response 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:6,347,446...6,393,784
Ensembl chrNW_004936555:6,356,691...6,393,825
Ensembl chrNW_004936555:6,356,691...6,393,825
JBrowse link
G Rorc RAR related orphan receptor C acts_upstream_of_or_within ISO (PMID:21737317) MGI PMID:21737317 NCBI chrNW_004936580:1,997,640...2,020,649
Ensembl chrNW_004936580:1,997,640...2,020,649
JBrowse link
G Sox13 SRY-box transcription factor 13 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21737317) Ensembl
MGI
PMID:21737317 GO_REF:0000107 NCBI chrNW_004936567:631,126...641,967
Ensembl chrNW_004936567:630,855...642,017
JBrowse link
G Tcf7 transcription factor 7 involved_in ISO (MGI:5486619|PMID:23562159) UniProt PMID:23562159 MGI:5486619 NCBI chrNW_004936647:1,096,726...1,125,753
Ensembl chrNW_004936647:1,097,019...1,125,729
JBrowse link
regulation of immature T cell proliferation in thymus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tnfrsf9 TNF receptor superfamily member 9 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:8405064) Ensembl
MGI
PMID:8405064 GO_REF:0000107 NCBI chrNW_004936623:2,398,446...2,407,990
Ensembl chrNW_004936623:2,399,752...2,407,009
JBrowse link
G Tnfsf9 TNF superfamily member 9 acts_upstream_of_or_within ISO (PMID:8405064) MGI PMID:8405064 NCBI chrNW_004936588:3,844,924...3,847,218 JBrowse link
regulation of memory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl6 BCL6 transcription repressor involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15240675) Ensembl
MGI
PMID:15240675 GO_REF:0000107 NCBI chrNW_004936578:2,371,976...2,395,034
Ensembl chrNW_004936578:2,371,945...2,395,071
JBrowse link
regulation of NK T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prdm1 PR/SET domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936564:2,594,362...2,690,680
Ensembl chrNW_004936564:2,667,660...2,690,683
JBrowse link
G Znf683 zinc finger protein 683 involved_in ISO (MGI:5779429|PMID:27102484) UniProt PMID:27102484 MGI:5779429 NCBI chrNW_004936474:10,851,249...10,859,092 JBrowse link
regulation of positive thymic T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxn1 forkhead box N1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:4,717,509...4,745,504
Ensembl chrNW_004936538:4,731,958...4,744,796
JBrowse link
G Tox thymocyte selection associated high mobility group box involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936496:13,847,210...14,146,110
Ensembl chrNW_004936496:13,847,210...14,147,886
JBrowse link
regulation of regulatory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd28 CD28 molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21245484) Ensembl
MGI
PMID:21245484 GO_REF:0000107 NCBI chrNW_004936631:335,411...363,407
Ensembl chrNW_004936631:335,411...363,407
JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:18725527) MGI PMID:18725527 NCBI chrNW_004936846:528,768...584,599
Ensembl chrNW_004936846:532,972...575,689
JBrowse link
G Drosha drosha ribonuclease III involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18725527) Ensembl
MGI
PMID:18725527 GO_REF:0000107 NCBI chrNW_004936518:9,100,094...9,218,405
Ensembl chrNW_004936518:9,106,142...9,219,174
JBrowse link
G Fanca FA complementation group A involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24501220) Ensembl
TreeGrafter
MGI
PMID:24501220 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936641:281,119...319,796
Ensembl chrNW_004936641:281,073...324,053
JBrowse link
G Fancd2 FA complementation group D2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24501220) Ensembl
MGI
PMID:24501220 GO_REF:0000107 NCBI chrNW_004936602:3,162,177...3,220,468
Ensembl chrNW_004936602:3,161,960...3,209,868
JBrowse link
G Kat2a lysine acetyltransferase 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:16,952,698...16,960,424
Ensembl chrNW_004936490:16,952,363...16,960,489
JBrowse link
G Lck LCK proto-oncogene, Src family tyrosine kinase acts_upstream_of_or_within ISO (PMID:21245484) MGI PMID:21245484 NCBI chrNW_004936474:15,293,115...15,314,072
Ensembl chrNW_004936474:15,305,050...15,313,668
JBrowse link
G Sh2b3 SH2B adaptor protein 3 ISO RGD PMID:25776069 RGD:13442483 NCBI chrNW_004936558:4,103,898...4,126,883
Ensembl chrNW_004936558:4,104,534...4,123,869
JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21245484) Ensembl
MGI
PMID:21245484 GO_REF:0000107 NCBI chrNW_004936661:3,742,080...3,758,266
Ensembl chrNW_004936661:3,742,066...3,758,272
JBrowse link
regulation of T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:17,690,206...17,819,619
Ensembl chrNW_004936487:17,690,968...17,819,669
JBrowse link
G Ada adenosine deaminase acts_upstream_of_or_within ISO (PMID:7670465) MGI PMID:7670465 NCBI chrNW_004936530:2,217,713...2,224,070 JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18228248) Ensembl
MGI
PMID:18228248 GO_REF:0000107 NCBI chrNW_004936592:4,728,371...4,833,830
Ensembl chrNW_004936592:4,737,011...4,834,664
JBrowse link
G Card11 caspase recruitment domain family member 11 acts_upstream_of_or_within ISO (PMID:12867038) MGI PMID:12867038 NCBI chrNW_004936823:580,438...621,298
Ensembl chrNW_004936823:581,955...621,208
JBrowse link
G Crtam cytotoxic and regulatory T cell molecule involved_in ISO (MGI:5581366|PMID:24687959) UniProt PMID:24687959 MGI:5581366 NCBI chrNW_004936542:7,402,879...7,411,510 JBrowse link
G Fas Fas cell surface death receptor acts_upstream_of_or_within ISO (PMID:6610701) MGI PMID:6610701 NCBI chrNW_004936735:209,369...234,582 JBrowse link
G Il15 interleukin 15 acts_upstream_of_or_within ISO (PMID:10704459) MGI PMID:10704459 NCBI chrNW_004936535:6,344,348...6,358,803
Ensembl chrNW_004936535:6,344,395...6,350,197
JBrowse link
G LOC101963482 HLA class II histocompatibility antigen, DO alpha chain involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11069069) Ensembl
MGI
PMID:11069069 GO_REF:0000107 NCBI chrNW_004936476:25,786,322...25,790,881
Ensembl chrNW_004936476:25,787,492...25,790,950
JBrowse link
G LOC101964770 C-C chemokine receptor type 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:285,559...287,198
Ensembl chrNW_004936596:285,559...286,680
JBrowse link
G LOC101975674 cytochrome P450 26B1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23991089) Ensembl
MGI
PMID:23991089 GO_REF:0000107 NCBI chrNW_004936491:16,010,394...16,028,852
Ensembl chrNW_004936491:16,010,070...16,028,895
JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in ISO (MGI:6094929|PMID:28792938) UniProt PMID:28792938 MGI:6094929 NCBI chrNW_004936880:646,835...661,312
Ensembl chrNW_004936880:644,079...661,544
JBrowse link
G Prelid1 PRELI domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936597:1,580,849...1,584,445
Ensembl chrNW_004936597:1,580,850...1,584,445
JBrowse link
G Rag1 recombination activating 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18684012) Ensembl
MGI
PMID:18684012 GO_REF:0000107 NCBI chrNW_004936533:1,817,135...1,827,393
Ensembl chrNW_004936533:1,817,135...1,827,393
JBrowse link
G Slc46a2 solute carrier family 46 member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18684012) Ensembl
MGI
PMID:18684012 GO_REF:0000107 NCBI chrNW_004936559:670,239...674,061
Ensembl chrNW_004936559:670,231...679,766
JBrowse link
G Tbx21 T-box transcription factor 21 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:13,546,405...13,558,635
Ensembl chrNW_004936490:13,546,292...13,558,635
JBrowse link
regulation of T cell differentiation in thymus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase ISO RGD PMID:3876160 RGD:152995412 NCBI chrNW_004936530:2,217,713...2,224,070 JBrowse link
G Adrm1 ADRM1 26S proteasome ubiquitin receptor involved_in ISO (MGI:4849324|PMID:21048919) BHF-UCL PMID:21048919 MGI:4849324 NCBI chrNW_004936514:9,923,956...9,928,168
Ensembl chrNW_004936514:9,923,896...9,928,170
JBrowse link
G Ankle1 ankyrin repeat and LEM domain containing 1 NOT|involved_in ISO (MGI:5800654|PMID:27010503) UniProt PMID:27010503 MGI:5800654 NCBI chrNW_004936596:3,568,810...3,573,506
Ensembl chrNW_004936596:3,569,814...3,573,344
JBrowse link
G Clptm1 CLPTM1 regulator of GABA type A receptor forward trafficking involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:1,535,871...1,564,809
Ensembl chrNW_004936706:1,535,871...1,564,825
JBrowse link
G Foxn1 forkhead box N1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22072979) Ensembl
MGI
PMID:22072979 GO_REF:0000107 NCBI chrNW_004936538:4,717,509...4,745,504
Ensembl chrNW_004936538:4,731,958...4,744,796
JBrowse link
G Lgals9 galectin 9 NOT|involved_in ISO (MGI:5688819|PMID:25065622) UniProt PMID:25065622 MGI:5688819 NCBI chrNW_004936538:4,034,467...4,050,240 JBrowse link
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24043312) Ensembl
MGI
PMID:24043312 GO_REF:0000107 NCBI chrNW_004936508:12,162,553...12,281,812
Ensembl chrNW_004936508:12,162,547...12,281,820
JBrowse link
G Sos2 SOS Ras/Rho guanine nucleotide exchange factor 2 acts_upstream_of_or_within ISO (PMID:24043312) MGI PMID:24043312 NCBI chrNW_004936495:15,286,524...15,365,598 JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9126927)
(PMID:9389660)
Ensembl
MGI
PMID:9126927 PMID:9389660 GO_REF:0000107 NCBI chrNW_004936574:17,643...175,762
Ensembl chrNW_004936574:17,684...178,293
JBrowse link
regulation of T-helper 1 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il27 interleukin 27 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936501:11,972,715...11,978,152
Ensembl chrNW_004936501:11,973,385...11,976,583
JBrowse link
regulation of T-helper 17 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl20 C-C motif chemokine ligand 20 NOT|involved_in ISO (MGI:3820359|PMID:19050256) UniProt PMID:19050256 MGI:3820359 NCBI chrNW_004936525:8,238,128...8,240,974
Ensembl chrNW_004936525:8,237,831...8,240,974
JBrowse link
G Ccr6 C-C motif chemokine receptor 6 NOT|involved_in ISO (MGI:3820359|PMID:19050256) UniProt PMID:19050256 MGI:3820359 NCBI chrNW_004936489:16,669,297...16,689,451
Ensembl chrNW_004936489:16,669,297...16,689,451
JBrowse link
regulation of T-helper cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18776904) Ensembl
MGI
PMID:18776904 GO_REF:0000107 NCBI chrNW_004936484:6,780,692...6,800,883
Ensembl chrNW_004936484:6,780,692...6,800,966
JBrowse link
G LOC101969065 mamu class II histocompatibility antigen, DR alpha chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:540,225...544,968
Ensembl chrNW_004936727:540,217...545,036
JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18776904) Ensembl
MGI
PMID:18776904 GO_REF:0000107 NCBI chrNW_004936580:4,546,139...4,560,157
Ensembl chrNW_004936580:4,551,304...4,560,163
JBrowse link
regulatory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd28 CD28 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936631:335,411...363,407
Ensembl chrNW_004936631:335,411...363,407
JBrowse link
G Foxp3 forkhead box P3 involved_in
acts_upstream_of
IEA
ISO
(PMID:16769892), (PMID:17028180) Ensembl
MGI
PMID:16769892 PMID:17028180 GO_REF:0000107 NCBI chrNW_004936721:1,118,376...1,125,282
Ensembl chrNW_004936721:1,118,782...1,132,308
JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15100250)
(PMID:17481928)
Ensembl
MGI
PMID:15100250 PMID:17481928 GO_REF:0000107 NCBI chrNW_004936661:3,742,080...3,758,266
Ensembl chrNW_004936661:3,742,066...3,758,272
JBrowse link
G Usp44 ubiquitin specific peptidase 44 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936507:11,663,069...11,692,174
Ensembl chrNW_004936507:11,660,129...11,681,366
JBrowse link
T cell differentiation in thymus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of ISO (PMID:11435465)
(PMID:11067867), (PMID:12163459), (PMID:16670300)
(PMID:11067867), (PMID:16670300)
MGI PMID:11067867 PMID:11435465 PMID:12163459 PMID:16670300 NCBI chrNW_004936530:2,217,713...2,224,070 JBrowse link
G Adam17 ADAM metallopeptidase domain 17 involved_in ISO (MGI:3828349|PMID:17371977) BHF-UCL PMID:17371977 MGI:3828349 NCBI chrNW_004936532:5,864,851...5,904,005
Ensembl chrNW_004936532:5,864,867...5,904,003
JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (PMID:16025118) MGI PMID:16025118 NCBI chrNW_004936531:6,899,580...7,019,016
Ensembl chrNW_004936531:6,899,788...7,019,453
JBrowse link
G B2m beta-2-microglobulin involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18776904) Ensembl
MGI
PMID:18776904 GO_REF:0000107 NCBI chrNW_004936471:7,646,504...7,655,656
Ensembl chrNW_004936471:7,646,373...7,655,778
JBrowse link
G Bcl11b BCL11 transcription factor B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16670294) Ensembl
MGI
PMID:16670294 GO_REF:0000107 NCBI chrNW_004936604:3,023,781...3,110,104
Ensembl chrNW_004936604:3,023,844...3,110,083
JBrowse link
G Bcl2 BCL2 apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:8170972), (PMID:9028316) Ensembl
MGI
PMID:8170972 PMID:9028316 GO_REF:0000107 NCBI chrNW_004936497:2,209,136...2,373,580
Ensembl chrNW_004936497:2,210,334...2,210,921
JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23334952) Ensembl
MGI
PMID:23334952 GO_REF:0000107 NCBI chrNW_004936592:4,728,371...4,833,830
Ensembl chrNW_004936592:4,737,011...4,834,664
JBrowse link
G Cd3e CD3e molecule ISO RGD PMID:11896936 RGD:2313407 NCBI chrNW_004936542:3,379,361...3,390,677 JBrowse link
G Cdk6 cyclin dependent kinase 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21508411) Ensembl
MGI
PMID:21508411 GO_REF:0000107 NCBI chrNW_004936803:1,025,047...1,229,396
Ensembl chrNW_004936803:1,024,779...1,227,516
JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16025118) Ensembl
MGI
PMID:16025118 GO_REF:0000107 NCBI chrNW_004936473:29,999,542...30,034,610
Ensembl chrNW_004936473:29,999,562...30,038,293
JBrowse link
G Dnaja3 DnaJ heat shock protein family (Hsp40) member A3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15879105) Ensembl
MGI
PMID:15879105 GO_REF:0000107 NCBI chrNW_004936694:43,898...74,939
Ensembl chrNW_004936694:44,635...74,958
JBrowse link
G Fadd Fas associated via death domain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:633,501...639,412
Ensembl chrNW_004936599:633,330...639,456
JBrowse link
G Fzd5 frizzled class receptor 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11265645) Ensembl
MGI
PMID:11265645 GO_REF:0000107 NCBI chrNW_004936631:3,909,046...3,915,939
Ensembl chrNW_004936631:3,911,693...3,915,560
JBrowse link
G Fzd7 frizzled class receptor 7 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11265645) Ensembl
MGI
PMID:11265645 GO_REF:0000107 NCBI chrNW_004936726:1,256,684...1,275,324
Ensembl chrNW_004936726:1,256,678...1,275,467
JBrowse link
G Fzd8 frizzled class receptor 8 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11265645) Ensembl
MGI
PMID:11265645 GO_REF:0000107 NCBI chrNW_004936574:3,900,534...3,907,513
Ensembl chrNW_004936574:3,904,532...3,906,625
JBrowse link
G Gata3 GATA binding protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18776904)
(PMID:19934022)
(PMID:14670303)
(PMID:8945476)
Ensembl
MGI
PMID:8945476 PMID:14670303 PMID:18776904 PMID:19934022 GO_REF:0000107 NCBI chrNW_004936484:6,780,692...6,800,883
Ensembl chrNW_004936484:6,780,692...6,800,966
JBrowse link
G Gba1 glucosylceramidase beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22665763) Ensembl
MGI
PMID:22665763 GO_REF:0000107 NCBI chrNW_004936580:4,715,869...4,720,752
Ensembl chrNW_004936580:4,715,408...4,720,798
JBrowse link
G Gli3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15855276) Ensembl
MGI
PMID:15855276 GO_REF:0000107 NCBI chrNW_004936478:17,129,922...17,403,630
Ensembl chrNW_004936478:17,126,911...17,403,011
JBrowse link
G Il2rg interleukin 2 receptor subunit gamma involved_in
acts_upstream_of
IEA
ISO
(PMID:9252128)
(PMID:9916699)
Ensembl
MGI
PMID:9252128 PMID:9916699 GO_REF:0000107 NCBI chrNW_004936762:487,414...491,028
Ensembl chrNW_004936762:487,380...491,044
JBrowse link
G Il7r interleukin 7 receptor acts_upstream_of ISO (PMID:9215626) MGI PMID:9215626 NCBI chrNW_004936518:5,815,820...5,842,571 JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:14715629) Ensembl
MGI
PMID:14715629 GO_REF:0000107 NCBI chrNW_004936594:1,760,924...1,771,022
Ensembl chrNW_004936594:1,760,853...1,770,765
JBrowse link
G LOC101954516 signal transducer and activator of transcription 5B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15294943) Ensembl
MGI
PMID:15294943 GO_REF:0000107 NCBI chrNW_004936490:17,022,268...17,043,751
Ensembl chrNW_004936490:17,021,051...17,043,941
JBrowse link
G LOC101972633 major histocompatibility complex class I-related gene protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:8,325,918...8,347,941
Ensembl chrNW_004936481:8,327,690...8,347,960
JBrowse link
G Mafb MAF bZIP transcription factor B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19164599) Ensembl
MGI
PMID:19164599 GO_REF:0000107 NCBI chrNW_004936561:1,007,273...1,010,548
Ensembl chrNW_004936561:1,007,647...1,008,618
JBrowse link
G Mpzl2 myelin protein zero like 2 acts_upstream_of_or_within ISO (PMID:19851463) MGI PMID:19851463 NCBI chrNW_004936542:3,332,822...3,344,663
Ensembl chrNW_004936542:3,333,830...3,343,852
JBrowse link
G Ncaph2 non-SMC condensin II complex subunit H2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17640884) Ensembl
MGI
PMID:17640884 GO_REF:0000107 NCBI chrNW_004936629:320,885...327,290
Ensembl chrNW_004936629:321,011...327,607
JBrowse link
G Ncor1 nuclear receptor corepressor 1 acts_upstream_of_or_within ISO (PMID:11030619) MGI PMID:11030619 NCBI chrNW_004936821:382,756...538,254
Ensembl chrNW_004936821:382,383...536,223
JBrowse link
G Nfkbid NFKB inhibitor delta acts_upstream_of ISO (PMID:11931770) MGI PMID:11931770 NCBI chrNW_004936570:464,513...471,333
Ensembl chrNW_004936570:463,974...471,344
JBrowse link
G Nkap NFKB activating protein involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20610818) Ensembl
MGI
PMID:20610818 GO_REF:0000107 NCBI chrNW_004936479:10,024,674...10,041,738
Ensembl chrNW_004936479:10,024,705...10,041,590
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9768755) Ensembl
MGI
PMID:9768755 GO_REF:0000107 NCBI chrNW_004936590:4,722,914...4,887,615
Ensembl chrNW_004936590:4,722,873...4,890,156
JBrowse link
G Prr7 proline rich 7, synaptic involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936597:1,726,143...1,735,295
Ensembl chrNW_004936597:1,726,070...1,735,343
JBrowse link
G Psmb11 proteasome subunit beta 11 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:31915251) Ensembl
MGI
PMID:31915251 GO_REF:0000107 NCBI chrNW_004936722:1,279,867...1,281,232
Ensembl chrNW_004936722:1,280,042...1,280,923
JBrowse link
G Rabl3 RAB, member of RAS oncogene family like 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936536:7,366,669...7,417,951
Ensembl chrNW_004936536:7,366,625...7,418,679
JBrowse link
G Rag1 recombination activating 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9215624) Ensembl
MGI
UniProt
PMID:9215624 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936533:1,817,135...1,827,393
Ensembl chrNW_004936533:1,817,135...1,827,393
JBrowse link
G Rag2 recombination activating 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936533:1,801,207...1,807,431
Ensembl chrNW_004936533:1,801,391...1,807,431
JBrowse link
G Ripk3 receptor interacting serine/threonine kinase 3 involved_in IEA
ISS
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chrNW_004936722:209,019...212,817
Ensembl chrNW_004936722:209,013...212,839
JBrowse link
G Rorc RAR related orphan receptor C acts_upstream_of_or_within ISO (PMID:15247480) MGI PMID:15247480 NCBI chrNW_004936580:1,997,640...2,020,649
Ensembl chrNW_004936580:1,997,640...2,020,649
JBrowse link
G Rps6 ribosomal protein S6 acts_upstream_of_or_within ISO (PMID:16357222) MGI PMID:16357222 NCBI chrNW_004936652:1,252,986...1,255,987
Ensembl chrNW_004936652:1,253,025...1,255,906
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of
IEA
ISO
(PMID:10981962) Ensembl
MGI
PMID:10981962 GO_REF:0000107 NCBI chrNW_004936527:10,033,095...10,042,713
Ensembl chrNW_004936527:10,033,299...10,042,599
JBrowse link
G Tcf3 transcription factor 3 acts_upstream_of_or_within ISO (PMID:18958875) MGI PMID:18958875 NCBI chrNW_004936588:884,817...913,052
Ensembl chrNW_004936588:884,789...912,753
JBrowse link
G Tespa1 thymocyte expressed, positive selection associated 1 involved_in
acts_upstream_of
IEA
ISO
(PMID:28598420) Ensembl
MGI
PMID:28598420 GO_REF:0000107 NCBI chrNW_004936891:512,882...549,676
Ensembl chrNW_004936891:512,671...534,025
JBrowse link
G Tp53 tumor protein p53 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16357222) Ensembl
MGI
PMID:16357222 GO_REF:0000107 NCBI chrNW_004936595:919,807...935,367
Ensembl chrNW_004936595:919,428...925,425
JBrowse link
G Wnt1 Wnt family member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11265645) Ensembl
MGI
PMID:11265645 GO_REF:0000107 NCBI chrNW_004936512:6,781,001...6,785,358
Ensembl chrNW_004936512:6,780,882...6,785,358
JBrowse link
G Wnt4 Wnt family member 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11265645) Ensembl
MGI
PMID:11265645 GO_REF:0000107 NCBI chrNW_004936474:7,623,462...7,635,416
Ensembl chrNW_004936474:7,623,463...7,635,664
JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 acts_upstream_of_or_within ISO (PMID:22201126) MGI PMID:22201126 NCBI chrNW_004936495:8,212,136...8,238,876 JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:12,045,679...12,050,737
Ensembl chrNW_004936495:12,045,377...12,051,536
JBrowse link
G Zfp36l2 ZFP36 ring finger protein like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936508:8,617,185...8,620,823
Ensembl chrNW_004936508:8,617,100...8,621,495
JBrowse link
T cell differentiation involved in immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec4d C-type lectin domain family 4 member D involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23602766) Ensembl
MGI
PMID:23602766 GO_REF:0000107 NCBI chrNW_004936858:303,639...312,092
Ensembl chrNW_004936858:303,639...312,083
JBrowse link
G Clec4e C-type lectin domain family 4 member E involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23602766) Ensembl
MGI
PMID:23602766 GO_REF:0000107 NCBI chrNW_004936858:316,954...321,668
Ensembl chrNW_004936858:316,954...321,668
JBrowse link
G Fcer1g Fc fragment of IgE receptor Ig acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:23602766) MGI
TreeGrafter
PMID:23602766 GO_REF:0000118 NCBI chrNW_004936903:514,278...517,975
Ensembl chrNW_004936903:514,761...517,948
JBrowse link
G Sema4a semaphorin 4A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:5,404,380...5,431,183
Ensembl chrNW_004936580:5,406,194...5,431,185
JBrowse link
T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2 apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:8788039) Ensembl
MGI
PMID:8788039 GO_REF:0000107 NCBI chrNW_004936497:2,209,136...2,373,580
Ensembl chrNW_004936497:2,210,334...2,210,921
JBrowse link
G Foxn1 forkhead box N1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:4,717,509...4,745,504
Ensembl chrNW_004936538:4,731,958...4,744,796
JBrowse link
G Il7 interleukin 7 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9252127) Ensembl
MGI
PMID:9252127 GO_REF:0000107 NCBI chrNW_004936702:110,625...162,957
Ensembl chrNW_004936702:111,211...162,322
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:8788039) Ensembl
MGI
PMID:8788039 GO_REF:0000107 NCBI chrNW_004936590:4,722,914...4,887,615
Ensembl chrNW_004936590:4,722,873...4,890,156
JBrowse link
G Rag2 recombination activating 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:8788039) Ensembl
MGI
PMID:8788039 GO_REF:0000107 NCBI chrNW_004936533:1,801,207...1,807,431
Ensembl chrNW_004936533:1,801,391...1,807,431
JBrowse link
G Tp53 tumor protein p53 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:8788039) Ensembl
MGI
PMID:8788039 GO_REF:0000107 NCBI chrNW_004936595:919,807...935,367
Ensembl chrNW_004936595:919,428...925,425
JBrowse link
T cell receptor V(D)J recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11b BCL11 transcription factor B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12717433) Ensembl
MGI
PMID:12717433 GO_REF:0000107 NCBI chrNW_004936604:3,023,781...3,110,104
Ensembl chrNW_004936604:3,023,844...3,110,083
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9462507) Ensembl
MGI
PMID:9462507 GO_REF:0000107 NCBI chrNW_004936818:453,635...569,194
Ensembl chrNW_004936818:453,635...567,469
JBrowse link
G Lig4 DNA ligase 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10911993) Ensembl
MGI
PMID:10911993 GO_REF:0000107 NCBI chrNW_004936472:3,861,833...3,867,943
Ensembl chrNW_004936472:3,861,866...3,867,933
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9768755) Ensembl
MGI
PMID:9768755 GO_REF:0000107 NCBI chrNW_004936590:4,722,914...4,887,615
Ensembl chrNW_004936590:4,722,873...4,890,156
JBrowse link
G Tcf7 transcription factor 7 acts_upstream_of_or_within ISO (PMID:9462507) MGI PMID:9462507 NCBI chrNW_004936647:1,096,726...1,125,753
Ensembl chrNW_004936647:1,097,019...1,125,729
JBrowse link
T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd4 CD4 molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936709:997,776...1,022,791
Ensembl chrNW_004936709:997,750...1,022,884
JBrowse link
T follicular helper cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl2 achaete-scute family bHLH transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936794:567,462...569,195
Ensembl chrNW_004936794:568,567...569,139
JBrowse link
G Foxp1 forkhead box P1 involved_in ISO (MGI:5607369|PMID:24859450) UniProt PMID:24859450 MGI:5607369 NCBI chrNW_004936603:2,631,781...3,146,104
Ensembl chrNW_004936603:2,632,274...2,830,324
JBrowse link
G Gpr183 G protein-coupled receptor 183 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936472:11,196,567...11,198,890
Ensembl chrNW_004936472:11,186,267...11,198,832
JBrowse link
G Il21 interleukin 21 involved_in ISO (MGI:5450752|PMID:23045607) UniProt PMID:23045607 MGI:5450752 NCBI chrNW_004936662:1,689,879...1,696,883
Ensembl chrNW_004936662:1,689,879...1,696,883
JBrowse link
G Il6 interleukin 6 involved_in ISO (MGI:5450752|PMID:23045607) UniProt PMID:23045607 MGI:5450752 NCBI chrNW_004936549:7,015,595...7,016,246 JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23583643) Ensembl
MGI
PMID:23583643 GO_REF:0000107 NCBI chrNW_004936481:13,919,006...13,973,868
Ensembl chrNW_004936481:13,919,257...13,966,677
JBrowse link
G Rc3h2 ring finger and CCCH-type domains 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23583643) Ensembl
MGI
PMID:23583643 GO_REF:0000107 NCBI chrNW_004936487:11,341,663...11,393,275
Ensembl chrNW_004936487:11,341,700...11,389,859
JBrowse link
T-helper 1 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cracr2a calcium release activated channel regulator 2A involved_in ISO (PMID:29987160)
(MGI:6195365|PMID:29987160)
UniProt PMID:29987160 MGI:6195365 NCBI chrNW_004936606:3,880,214...3,970,278
Ensembl chrNW_004936606:3,882,276...3,955,765
JBrowse link
G Hlx H2.0 like homeobox involved_in
acts_upstream_of
IEA
ISO
(PMID:16424184) Ensembl
MGI
PMID:16424184 GO_REF:0000107 NCBI chrNW_004936650:1,416,825...1,422,595
Ensembl chrNW_004936650:1,416,812...1,422,588
JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:15944249) UniProt PMID:15944249 NCBI chrNW_004936472:25,236,728...25,246,585
Ensembl chrNW_004936472:25,236,728...25,246,580
JBrowse link
G Il18r1 interleukin 18 receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10227969) Ensembl
MGI
PMID:10227969 GO_REF:0000107 NCBI chrNW_004936713:1,038,985...1,075,770
Ensembl chrNW_004936713:1,038,877...1,075,811
JBrowse link
G Il4r interleukin 4 receptor involved_in
acts_upstream_of
IEA
ISO
(PMID:16424184) Ensembl
MGI
PMID:16424184 GO_REF:0000107 NCBI chrNW_004936501:11,025,590...11,058,807
Ensembl chrNW_004936501:11,025,567...11,058,818
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936818:453,635...569,194
Ensembl chrNW_004936818:453,635...567,469
JBrowse link
G Nfkbiz NFKB inhibitor zeta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936630:1,601,006...1,633,844
Ensembl chrNW_004936630:1,601,010...1,632,745
JBrowse link
G Relb RELB proto-oncogene, NF-kB subunit involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16081776) Ensembl
MGI
PMID:16081776 GO_REF:0000107 NCBI chrNW_004936706:1,569,603...1,596,831
Ensembl chrNW_004936706:1,569,756...1,596,456
JBrowse link
G Sema4a semaphorin 4A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:5,404,380...5,431,183
Ensembl chrNW_004936580:5,406,194...5,431,185
JBrowse link
G Stat4 signal transducer and activator of transcription 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936506:7,091,982...7,185,938
Ensembl chrNW_004936506:7,095,009...7,184,689
JBrowse link
G Tmem98 transmembrane protein 98 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:2,065,663...2,074,678
Ensembl chrNW_004936538:2,064,696...2,074,730
JBrowse link
T-helper 1 cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtor mechanistic target of rapamycin kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:158,376...282,310
Ensembl chrNW_004936474:157,590...282,342
JBrowse link
G Spn sialophorin involved_in ISO (PMID:18036228) UniProt PMID:18036228 NCBI chrNW_004936501:12,773,967...12,776,642 JBrowse link
G Stat6 signal transducer and activator of transcription 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20706986) Ensembl
MGI
PMID:20706986 GO_REF:0000107 NCBI chrNW_004936646:1,297,530...1,312,508
Ensembl chrNW_004936646:1,296,290...1,312,157
JBrowse link
G Tbx21 T-box transcription factor 21 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:13,546,405...13,558,635
Ensembl chrNW_004936490:13,546,292...13,558,635
JBrowse link
T-helper 17 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Batf basic leucine zipper ATF-like transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:4,607,716...4,631,237
Ensembl chrNW_004936488:4,607,716...4,631,283
JBrowse link
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936636:406,389...446,167
Ensembl chrNW_004936636:407,186...446,125
JBrowse link
G Nfkbiz NFKB inhibitor zeta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936630:1,601,006...1,633,844
Ensembl chrNW_004936630:1,601,010...1,632,745
JBrowse link
G Rora RAR related orphan receptor A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:21,402,056...21,567,908
Ensembl chrNW_004936471:21,400,589...22,069,643
JBrowse link
G Rorc RAR related orphan receptor C involved_in
acts_upstream_of_or_within
ISO (MGI:3692468|PMID:16990136), (MGI:3772713|PMID:18164222)
(PMID:20383124)
(PMID:18792410)
GO_Central
MGI
PMID:16990136 PMID:18164222 PMID:18792410 PMID:20383124 MGI:3692468 MGI:3772713 NCBI chrNW_004936580:1,997,640...2,020,649
Ensembl chrNW_004936580:1,997,640...2,020,649
JBrowse link
T-helper 17 cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Batf basic leucine zipper ATF-like transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:4,607,716...4,631,237
Ensembl chrNW_004936488:4,607,716...4,631,283
JBrowse link
G Il6 interleukin 6 involved_in ISO (MGI:6142555|PMID:27893700)
(MGI:3692468|PMID:16990136)
UniProt PMID:16990136 PMID:27893700 MGI:3692468 MGI:6142555 NCBI chrNW_004936549:7,015,595...7,016,246 JBrowse link
G Il6r interleukin 6 receptor involved_in ISO (MGI:6142555|PMID:27893700) UniProt PMID:27893700 MGI:6142555 NCBI chrNW_004936580:4,055,438...4,081,876
Ensembl chrNW_004936580:4,057,771...4,081,885
JBrowse link
G Irf4 interferon regulatory factor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936633:1,565,293...1,580,859
Ensembl chrNW_004936633:1,564,637...1,580,859
JBrowse link
G LOC101968708 T-lymphocyte surface antigen Ly-9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936903:53,648...143,272
Ensembl chrNW_004936903:111,986...143,081
JBrowse link
G Otud5 OTU deubiquitinase 5 acts_upstream_of_or_within ISO (PMID:25470037) MGI PMID:25470037 NCBI chrNW_004936721:847,360...876,912
Ensembl chrNW_004936721:848,324...877,068
JBrowse link
G Slamf6 SLAM family member 6 involved_in ISO (PMID:22184727) UniProt PMID:22184727 NCBI chrNW_004936740:155,268...165,536 JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:17,119,189...17,178,402
Ensembl chrNW_004936490:17,117,290...17,178,402
JBrowse link
T-helper 2 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Batf basic leucine zipper ATF-like transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:4,607,716...4,631,237
Ensembl chrNW_004936488:4,607,716...4,631,283
JBrowse link
G Bcl3 BCL3 transcription coactivator involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16081776) Ensembl
MGI
PMID:16081776 GO_REF:0000107 NCBI chrNW_004936706:1,410,848...1,427,822
Ensembl chrNW_004936706:1,416,249...1,427,407
JBrowse link
G Bcl6 BCL6 transcription repressor involved_in
acts_upstream_of
IEA
ISO
(PMID:12594267) Ensembl
MGI
PMID:12594267 GO_REF:0000107 NCBI chrNW_004936578:2,371,976...2,395,034
Ensembl chrNW_004936578:2,371,945...2,395,071
JBrowse link
G Gata3 GATA binding protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20706986) Ensembl
MGI
PMID:20706986 GO_REF:0000107 NCBI chrNW_004936484:6,780,692...6,800,883
Ensembl chrNW_004936484:6,780,692...6,800,966
JBrowse link
G Hlx H2.0 like homeobox involved_in
acts_upstream_of
IEA
ISO
(PMID:16424184) Ensembl
MGI
PMID:16424184 GO_REF:0000107 NCBI chrNW_004936650:1,416,825...1,422,595
Ensembl chrNW_004936650:1,416,812...1,422,588
JBrowse link
G Il4r interleukin 4 receptor involved_in
acts_upstream_of
IEA
ISO
(PMID:16424184) Ensembl
MGI
PMID:16424184 GO_REF:0000107 NCBI chrNW_004936501:11,025,590...11,058,807
Ensembl chrNW_004936501:11,025,567...11,058,818
JBrowse link
G Il6 interleukin 6 acts_upstream_of ISO (PMID:12594267) MGI PMID:12594267 NCBI chrNW_004936549:7,015,595...7,016,246 JBrowse link
G Kmt2a lysine methyltransferase 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:3,480,071...3,566,823
Ensembl chrNW_004936542:3,391,774...3,562,147
JBrowse link
G Men1 menin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:4,504,489...4,510,085
Ensembl chrNW_004936599:4,504,397...4,510,555
JBrowse link
G Myb MYB proto-oncogene, transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936560:2,797,943...2,828,813
Ensembl chrNW_004936560:2,796,697...2,829,650
JBrowse link
T-helper cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO (PMID:8434133) MGI PMID:8434133 NCBI chrNW_004936683:2,874,022...2,936,214
Ensembl chrNW_004936683:2,874,042...2,935,040
JBrowse link
G Il12b interleukin 12B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936515:4,056,214...4,066,121
Ensembl chrNW_004936515:4,056,214...4,065,076
JBrowse link
G Pdp2 pyruvate dehyrogenase phosphatase catalytic subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:17,139,135...17,146,021
Ensembl chrNW_004936475:17,139,521...17,143,304
JBrowse link
G Ptger4 prostaglandin E receptor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936518:1,903,636...1,916,746
Ensembl chrNW_004936518:1,903,725...1,916,746
JBrowse link
G Rorc RAR related orphan receptor C involved_in ISO (MGI:2686818|PMID:14691482) UniProt PMID:14691482 MGI:2686818 NCBI chrNW_004936580:1,997,640...2,020,649
Ensembl chrNW_004936580:1,997,640...2,020,649
JBrowse link
thymic T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Card11 caspase recruitment domain family member 11 acts_upstream_of_or_within ISO (PMID:12867038) MGI PMID:12867038 NCBI chrNW_004936823:580,438...621,298
Ensembl chrNW_004936823:581,955...621,208
JBrowse link
G Gata3 GATA binding protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:14670303) Ensembl
MGI
PMID:14670303 GO_REF:0000107 NCBI chrNW_004936484:6,780,692...6,800,883
Ensembl chrNW_004936484:6,780,692...6,800,966
JBrowse link
G Itpkb inositol-trisphosphate 3-kinase B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:14517551) Ensembl
MGI
PMID:14517551 GO_REF:0000107 NCBI chrNW_004936526:3,378,046...3,477,177
Ensembl chrNW_004936526:3,376,786...3,477,554
JBrowse link
G Jag2 jagged canonical Notch ligand 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936621:363,489...380,616
Ensembl chrNW_004936621:366,616...380,618
JBrowse link
G LOC101971458 tyrosine-protein kinase ZAP-70 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9208839) Ensembl
MGI
PMID:9208839 GO_REF:0000107 NCBI chrNW_004936744:1,000,105...1,012,712
Ensembl chrNW_004936744:1,000,105...1,012,433
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15911
    immune system process 2208
      leukocyte activation 925
        lymphocyte activation 756
          lymphocyte differentiation 402
            T cell differentiation 300
              T cell differentiation in thymus + 101
              T cell differentiation involved in immune response + 81
              T cell lineage commitment + 32
              T cell selection + 56
              alpha-beta T cell differentiation + 131
              cytotoxic T cell differentiation + 3
              exhausted T cell differentiation 0
              extrathymic T cell differentiation + 4
              gamma-delta T cell differentiation + 13
              negative regulation of T cell differentiation + 48
              positive regulation of T cell differentiation + 93
              pro-T cell differentiation + 4
              regulation of T cell differentiation + 158
              regulatory T cell differentiation + 39
              somatic diversification of T cell receptor genes + 5
Path 2
Term Annotations click to browse term
  biological_process 15911
    developmental process 6338
      cellular developmental process 4260
        cell differentiation 4259
          cell development 3059
            hemopoiesis 960
              leukocyte differentiation 611
                mononuclear cell differentiation 492
                  lymphocyte differentiation 402
                    T cell differentiation 300
                      T cell differentiation in thymus + 101
                      T cell differentiation involved in immune response + 81
                      T cell lineage commitment + 32
                      T cell selection + 56
                      alpha-beta T cell differentiation + 131
                      cytotoxic T cell differentiation + 3
                      exhausted T cell differentiation 0
                      extrathymic T cell differentiation + 4
                      gamma-delta T cell differentiation + 13
                      negative regulation of T cell differentiation + 48
                      positive regulation of T cell differentiation + 93
                      pro-T cell differentiation + 4
                      regulation of T cell differentiation + 158
                      regulatory T cell differentiation + 39
                      somatic diversification of T cell receptor genes + 5
paths to the root