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ONTOLOGY REPORT - ANNOTATIONS


Term:glycosaminoglycan metabolic process
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Accession:GO:0030203 term browser browse the term
Definition:The chemical reactions and pathways involving glycosaminoglycans, any of a group of polysaccharides that contain amino sugars.
Synonyms:exact_synonym: glycosaminoglycan metabolism


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glycosaminoglycan metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLN6 CLN6 transmembrane ER protein involved_in ISO (PMID:16857350) UniProt PMID:16857350 NCBI chr26:15,259,186...15,278,249 JBrowse link
G CLN6 CLN6 transmembrane ER protein involved_in IEA Ensembl GO_REF:0000107 Ensembl chr26:15,266,732...15,278,418 JBrowse link
G FOXC1 forkhead box C1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:4269479) Ensembl
MGI
PMID:4269479 GO_REF:0000107 NCBI chr17:70,533,048...70,536,555
Ensembl chr17:70,534,821...70,536,476
JBrowse link
G GNS glucosamine (N-acetyl)-6-sulfatase involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 NCBI chr11:60,390,479...60,434,266
Ensembl chr11:60,388,883...60,434,233
JBrowse link
G HEXA hexosaminidase subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:8896570) Ensembl
MGI
TreeGrafter
PMID:8896570 GO_REF:0000107 GO_REF:0000118 NCBI chr26:11,081,985...11,130,366
Ensembl chr26:11,082,468...11,116,075
JBrowse link
G HEXB hexosaminidase subunit beta involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:8896570) TreeGrafter
MGI
PMID:8896570 GO_REF:0000118 NCBI chr 4:69,037,532...69,065,925
Ensembl chr 4:69,037,583...69,065,814
JBrowse link
G NAGLU N-acetyl-alpha-glucosaminidase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19632871), (PMID:25524704), (PMID:29180785) Ensembl
MGI
PMID:19632871 PMID:25524704 PMID:29180785 GO_REF:0000107 NCBI chr16:63,735,411...63,744,365 JBrowse link
G NDST1 N-deacetylase and N-sulfotransferase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16020517) Ensembl
MGI
PMID:16020517 GO_REF:0000107 NCBI chr23:53,109,806...53,159,880
Ensembl chr23:53,123,222...53,155,016
JBrowse link
chondroitin sulfate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHPF chondroitin polymerizing factor involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22952769)
(PMID:22952873)
Ensembl
MGI
TreeGrafter
PMID:22952769 PMID:22952873 GO_REF:0000107 GO_REF:0000118 NCBI chr10:105,433,966...105,438,861
Ensembl chr10:105,432,912...105,438,896
JBrowse link
G CHPF2 chondroitin polymerizing factor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:119,417,357...119,423,601
Ensembl chr21:119,418,793...119,423,455
JBrowse link
G CHST11 carbohydrate sulfotransferase 11 involved_in
acts_upstream_of_or_within
ISO (PMID:11056388)
(PMID:21138417)
(PMID:10722746)
UniProt
MGI
PMID:10722746 PMID:11056388 PMID:21138417 NCBI chr11:99,662,890...99,982,276
Ensembl chr11:99,665,290...99,981,977
JBrowse link
G CHST12 carbohydrate sulfotransferase 12 involved_in ISO (PMID:10781601) UniProt PMID:10781601 NCBI chr28:19,174,283...19,200,564
Ensembl chr28:19,174,502...19,175,746
JBrowse link
G CHST13 carbohydrate sulfotransferase 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:54,471,165...54,491,436
Ensembl chr22:54,471,879...54,490,342
JBrowse link
G CHST3 carbohydrate sulfotransferase 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:9597547)
(PMID:11696535)
RGD
MGI
TreeGrafter
PMID:9597547 PMID:11696535 PMID:16495484 GO_REF:0000118 RGD:1600854 NCBI chr 9:59,292,705...59,295,821
Ensembl chr 9:59,293,158...59,300,866
JBrowse link
G CHST7 carbohydrate sulfotransferase 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:43,780,459...43,904,770
Ensembl chr  X:43,781,196...43,782,656
JBrowse link
G CHSY1 chondroitin sulfate synthase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:11514575)
(PMID:22952769)
MGI
TreeGrafter
Ensembl
PMID:11514575 PMID:22952769 GO_REF:0000107 GO_REF:0000118 NCBI chr29:19,633,335...19,707,547
Ensembl chr29:19,632,026...19,707,425
JBrowse link
G CHSY3 chondroitin sulfate synthase 3 involved_in ISO (PMID:17253960) MGI PMID:17253960 NCBI chr23:32,803,714...33,088,720 JBrowse link
G CHSY3 chondroitin sulfate synthase 3 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr23:33,086,302...33,087,873 JBrowse link
G CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr 8:17,494,312...17,851,497
Ensembl chr 8:17,494,187...17,695,037
JBrowse link
G CSGALNACT2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr 9:38,806,991...38,851,998
Ensembl chr 9:38,807,263...38,853,707
JBrowse link
G SLC35B2 solute carrier family 35 member B2 involved_in ISO (PMID:35325049) UniProt PMID:35325049 NCBI chr17:27,910,593...27,914,042
Ensembl chr17:27,911,294...27,913,443
JBrowse link
G SLC35D1 solute carrier family 35 member D1 acts_upstream_of_or_within ISO (PMID:17952091) MGI PMID:17952091 NCBI chr20:66,055,933...66,114,597
Ensembl chr20:66,056,924...66,109,654
JBrowse link
G UGDH UDP-glucose 6-dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:10,781,324...10,810,595
Ensembl chr27:10,781,502...10,810,817
JBrowse link
G XYLT1 xylosyltransferase 1 involved_in ISO (MGI:5544658|PMID:24161523) UniProt PMID:24161523 MGI:5544658 NCBI chr 5:16,197,982...16,566,893 JBrowse link
G XYLT1 xylosyltransferase 1 involved_in IEA UniProt GO_REF:0000041 Ensembl chr 5:16,313,935...16,564,177 JBrowse link
G XYLT2 xylosyltransferase 2 involved_in IEA UniProt GO_REF:0000041 NCBI chr16:42,969,198...42,984,542
Ensembl chr16:42,970,041...42,984,438
JBrowse link
chondroitin sulfate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HEXB hexosaminidase subunit beta involved_in ISO (PMID:22451654) MGI PMID:22451654 NCBI chr 4:69,037,532...69,065,925
Ensembl chr 4:69,037,583...69,065,814
JBrowse link
G HYAL1 hyaluronidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:11,689,123...11,693,144
Ensembl chr22:11,688,970...11,693,183
JBrowse link
G LOC103246571 beta-glucuronidase involved_in ISO (PMID:23897660) MGI PMID:23897660 NCBI chr28:1,621,293...1,646,097
Ensembl chr28:1,620,359...1,646,075
JBrowse link
chondroitin sulfate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BPNT2 3'(2'), 5'-bisphosphate nucleotidase 2 acts_upstream_of_or_within ISO (PMID:18695242)
(PMID:18539921)
MGI PMID:18539921 PMID:18695242 NCBI chr 8:52,962,686...52,999,006
Ensembl chr 8:52,968,532...52,998,996
JBrowse link
G CHST11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO (PMID:16079159) MGI PMID:16079159 NCBI chr11:99,662,890...99,982,276
Ensembl chr11:99,665,290...99,981,977
JBrowse link
G CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21148564)
(PMID:20812917)
Ensembl
MGI
PMID:20812917 PMID:21148564 GO_REF:0000107 NCBI chr 8:17,494,312...17,851,497
Ensembl chr 8:17,494,187...17,695,037
JBrowse link
G DSE dermatan sulfate epimerase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:57,377,001...57,447,589
Ensembl chr13:57,376,922...57,446,395
JBrowse link
G DSEL dermatan sulfate epimerase like involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22496542) TreeGrafter
MGI
PMID:22496542 GO_REF:0000118 NCBI chr18:12,227,239...12,237,090
Ensembl chr18:12,228,947...12,232,615
JBrowse link
G EXT1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:32201365) MGI PMID:32201365 NCBI chr 8:112,435,733...112,751,301 JBrowse link
dermatan sulfate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHST12 carbohydrate sulfotransferase 12 involved_in ISO (PMID:10781601) UniProt PMID:10781601 NCBI chr28:19,174,283...19,200,564
Ensembl chr28:19,174,502...19,175,746
JBrowse link
G CHST14 carbohydrate sulfotransferase 14 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:11470797) MGI
Ensembl
PMID:11470797 GO_REF:0000107 NCBI chr26:42,538,380...42,540,588
Ensembl chr26:42,539,203...42,540,333
JBrowse link
G DSE dermatan sulfate epimerase involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:57,377,001...57,447,589
Ensembl chr13:57,376,922...57,446,395
JBrowse link
dermatan sulfate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARSB arylsulfatase B involved_in ISO (PMID:24240681) MGI PMID:24240681 NCBI chr 4:73,016,497...73,203,570
Ensembl chr 4:73,015,980...73,202,439
JBrowse link
G HEXA hexosaminidase subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:11,081,985...11,130,366
Ensembl chr26:11,082,468...11,116,075
JBrowse link
G HEXB hexosaminidase subunit beta involved_in ISO (PMID:11707436) MGI PMID:11707436 NCBI chr 4:69,037,532...69,065,925
Ensembl chr 4:69,037,583...69,065,814
JBrowse link
G IDUA alpha-L-iduronidase involved_in
acts_upstream_of_or_within
ISO (PMID:24036510)
(PMID:19834056)
(PMID:19751987)
(PMID:25854773)
UniProt
MGI
PMID:19751987 PMID:19834056 PMID:24036510 PMID:25854773 NCBI chr27:47,778,220...47,794,435
Ensembl chr27:47,778,335...47,794,352
JBrowse link
G LOC103232717 iduronate 2-sulfatase involved_in ISO (PMID:30064964) MGI PMID:30064964 NCBI chr  X:124,187,554...124,214,764
Ensembl chr  X:124,191,390...124,214,157
JBrowse link
dermatan sulfate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DSE dermatan sulfate epimerase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:57,377,001...57,447,589
Ensembl chr13:57,376,922...57,446,395
JBrowse link
G DSEL dermatan sulfate epimerase like involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22496542) TreeGrafter
MGI
PMID:22496542 GO_REF:0000118 NCBI chr18:12,227,239...12,237,090
Ensembl chr18:12,228,947...12,232,615
JBrowse link
glycosaminoglycan biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B3GALT6 beta-1,3-galactosyltransferase 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11551958) TreeGrafter
MGI
PMID:11551958 GO_REF:0000118 NCBI chr20:130,210,828...130,212,732
Ensembl chr20:130,211,718...130,212,707
JBrowse link
G B3GAT1 beta-1,3-glucuronyltransferase 1 involved_in ISO (PMID:12032138), (PMID:26659409) MGI PMID:12032138 PMID:26659409 NCBI chr 1:125,449,162...125,490,208
Ensembl chr 1:125,448,500...125,490,192
JBrowse link
G B3GAT3 beta-1,3-glucuronyltransferase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:11,282,414...11,289,640
Ensembl chr 1:11,282,601...11,289,743
JBrowse link
G B4GALT7 beta-1,4-galactosyltransferase 7 involved_in ISO (PMID:10438455)
(PMID:33208938)
(PMID:20809901)
UniProt
MGI
PMID:10438455 PMID:20809901 PMID:33208938 NCBI chr23:79,617,929...79,628,265
Ensembl chr23:79,617,963...79,628,377
JBrowse link
G EXT1 exostosin glycosyltransferase 1 involved_in ISO (PMID:12907669) BHF-UCL PMID:12907669 NCBI chr 8:112,435,733...112,751,301 JBrowse link
G EXT2 exostosin glycosyltransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:21,077,159...21,282,317
Ensembl chr 1:21,119,987...21,281,635
JBrowse link
G HAS1 hyaluronan synthase 1 involved_in IEA UniProt GO_REF:0000117 NCBI chr 6:44,540,036...44,552,396
Ensembl chr 6:44,540,363...44,547,711
JBrowse link
G HAS2 hyaluronan synthase 2 involved_in IEA UniProt GO_REF:0000117 NCBI chr 8:116,199,516...116,228,705
Ensembl chr 8:116,200,799...116,228,788
JBrowse link
G HAS3 hyaluronan synthase 3 involved_in IEA UniProt GO_REF:0000117 NCBI chr 5:58,289,672...58,306,843
Ensembl chr 5:58,292,044...58,298,524
JBrowse link
G HEXA hexosaminidase subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:11,081,985...11,130,366
Ensembl chr26:11,082,468...11,116,075
JBrowse link
G HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 involved_in ISO (PMID:8900198), (PMID:9988768)
(MGI:6708015|PMID:15060080)
UniProt PMID:8900198 PMID:9988768 PMID:15060080 MGI:6708015 NCBI chr27:38,683,032...38,716,222
Ensembl chr27:38,714,570...38,715,493
JBrowse link
G HS3ST2 heparan sulfate-glucosamine 3-sulfotransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:20,511,329...20,612,114
Ensembl chr 5:20,511,762...20,611,336
JBrowse link
G HS3ST3A1 heparan sulfate-glucosamine 3-sulfotransferase 3A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:12,835,025...12,936,431
Ensembl chr16:12,835,338...12,935,627
JBrowse link
G LOC103242418 heparan sulfate glucosamine 3-O-sulfotransferase 3B1 involved_in ISO (PMID:9988768) UniProt PMID:9988768 NCBI chr16:13,604,377...13,653,247
Ensembl chr16:13,604,297...13,653,242
JBrowse link
G PDGFRB platelet derived growth factor receptor beta ISO RGD PMID:11903042 RGD:1581762 NCBI chr23:52,724,061...52,766,264
Ensembl chr23:52,724,005...52,766,234
JBrowse link
G PXYLP1 2-phosphoxylose phosphatase 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr15:49,307,124...49,369,961
Ensembl chr15:49,306,714...49,341,565
JBrowse link
G UGDH UDP-glucose 6-dehydrogenase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr27:10,781,324...10,810,595
Ensembl chr27:10,781,502...10,810,817
JBrowse link
G XYLT1 xylosyltransferase 1 involved_in ISO (PMID:24161523) MGI PMID:24161523 NCBI chr 5:16,197,982...16,566,893 JBrowse link
G XYLT2 xylosyltransferase 2 acts_upstream_of_or_within
involved_in
ISO (PMID:17517600) MGI PMID:17517600 NCBI chr16:42,969,198...42,984,542
Ensembl chr16:42,970,041...42,984,438
JBrowse link
glycosaminoglycan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HYAL2 hyaluronidase 2 involved_in ISO (PMID:9712871) UniProt PMID:9712871 NCBI chr22:11,704,422...11,710,013
Ensembl chr22:11,703,790...11,709,454
JBrowse link
G IDS iduronate 2-sulfatase involved_in ISO (PMID:28593992) UniProt PMID:28593992
G IDUA alpha-L-iduronidase acts_upstream_of_or_within ISO (PMID:19834056)
(PMID:19751987)
(PMID:16979922), (PMID:22580166)
(PMID:21873421)
RGD
MGI
PMID:6138357 PMID:16979922 PMID:19751987 PMID:19834056 PMID:21873421 More... RGD:1599427 NCBI chr27:47,778,220...47,794,435
Ensembl chr27:47,778,335...47,794,352
JBrowse link
G LOC103232717 iduronate 2-sulfatase involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:124,187,554...124,214,764
Ensembl chr  X:124,191,390...124,214,157
JBrowse link
G LYVE1 lymphatic vessel endothelial hyaluronan receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11278811) Ensembl
MGI
PMID:11278811 GO_REF:0000107 NCBI chr 1:54,252,203...54,268,873
Ensembl chr 1:54,253,495...54,269,598
JBrowse link
G SGSH N-sulfoglucosamine sulfohydrolase involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr16:72,192,559...72,203,230
Ensembl chr16:72,190,310...72,203,130
JBrowse link
heparin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANGPT1 angiopoietin 1 involved_in ISO (PMID:19297368) UniProt PMID:19297368 NCBI chr 8:102,020,346...102,268,443 JBrowse link
G EXT1 exostosin glycosyltransferase 1 acts_upstream_of_or_within_positive_effect ISO (PMID:10926768), (PMID:15161920), (PMID:15177029), (PMID:18480751)
(PMID:21148566)
(PMID:21310272)
MGI PMID:10926768 PMID:15161920 PMID:15177029 PMID:18480751 PMID:21148566 More... NCBI chr 8:112,435,733...112,751,301 JBrowse link
G EXT2 exostosin glycosyltransferase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21310272) Ensembl
MGI
PMID:21310272 GO_REF:0000107 NCBI chr 1:21,077,159...21,282,317
Ensembl chr 1:21,119,987...21,281,635
JBrowse link
G GLCE glucuronic acid epimerase involved_in IEA Ensembl
UniProt
GO_REF:0000041 GO_REF:0000107 NCBI chr26:14,181,625...14,295,414
Ensembl chr26:14,184,606...14,295,372
JBrowse link
G LOC103236155 N-deacetylase and N-sulfotransferase 4 involved_in IEA UniProt GO_REF:0000041 NCBI chr 7:62,619,344...62,911,843
Ensembl chr 7:62,622,455...62,874,293
JBrowse link
G NDST1 N-deacetylase and N-sulfotransferase 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr23:53,109,806...53,159,880
Ensembl chr23:53,123,222...53,155,016
JBrowse link
G NDST2 N-deacetylase and N-sulfotransferase 2 involved_in IEA UniProt GO_REF:0000041 NCBI chr 9:57,561,349...57,574,145
Ensembl chr 9:57,563,820...57,569,756
JBrowse link
G SLC10A7 solute carrier family 10 member 7 involved_in ISO (PMID:30082715)
(MGI:6198941|PMID:30082715)
UniProt PMID:30082715 MGI:6198941 NCBI chr 7:92,798,344...93,052,737 JBrowse link
G XYLT2 xylosyltransferase 2 acts_upstream_of_or_within ISO (PMID:17517600) MGI PMID:17517600 NCBI chr16:42,969,198...42,984,542
Ensembl chr16:42,970,041...42,984,438
JBrowse link
heparin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IDUA alpha-L-iduronidase acts_upstream_of_or_within ISO (PMID:21873421)
(PMID:19834056)
(PMID:19751987)
MGI PMID:19751987 PMID:19834056 PMID:21873421 NCBI chr27:47,778,220...47,794,435
Ensembl chr27:47,778,335...47,794,352
JBrowse link
heparin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EDNRA endothelin receptor type A involved_in ISO (PMID:27026367) MGI PMID:27026367 NCBI chr 7:93,980,983...94,043,863
Ensembl chr 7:93,985,797...94,042,296
JBrowse link
G EDNRB endothelin receptor type B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:56,969,493...56,993,719
Ensembl chr 3:56,969,101...56,992,731
JBrowse link
G EXT1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:26491162), (PMID:32201365) MGI PMID:26491162 PMID:32201365 NCBI chr 8:112,435,733...112,751,301 JBrowse link
G HPSE heparanase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:31,689,449...31,730,176
Ensembl chr 7:31,686,304...31,730,043
JBrowse link
G HS2ST1 heparan sulfate 2-O-sulfotransferase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11457822) Ensembl
MGI
PMID:11457822 GO_REF:0000107 NCBI chr20:46,346,009...46,546,363
Ensembl chr20:46,350,496...46,386,791
JBrowse link
G NAGLU N-acetyl-alpha-glucosaminidase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12111813), (PMID:25267636), (PMID:29624734) Ensembl
MGI
PMID:12111813 PMID:25267636 PMID:29624734 GO_REF:0000107 NCBI chr16:63,735,411...63,744,365 JBrowse link
hyaluronan biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCC5 ATP binding cassette subfamily C member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:5,409,921...5,505,334
Ensembl chr15:5,409,861...5,505,315
JBrowse link
G CCND3 cyclin D3 ISO RGD PMID:19276076 RGD:2316018 NCBI chr17:30,107,236...30,228,449
Ensembl chr17:30,221,598...30,227,452
JBrowse link
G HAS1 hyaluronan synthase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10617644) TreeGrafter
MGI
PMID:10617644 GO_REF:0000118 NCBI chr 6:44,540,036...44,552,396
Ensembl chr 6:44,540,363...44,547,711
JBrowse link
G HAS2 hyaluronan synthase 2 involved_in IEA Ensembl
TreeGrafter
UniProt
GO_REF:0000041 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:116,199,516...116,228,705
Ensembl chr 8:116,200,799...116,228,788
JBrowse link
G HAS3 hyaluronan synthase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9060470) Ensembl
MGI
TreeGrafter
PMID:9060470 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:58,289,672...58,306,843
Ensembl chr 5:58,292,044...58,298,524
JBrowse link
G HYAL1 hyaluronidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:11,689,123...11,693,144
Ensembl chr22:11,688,970...11,693,183
JBrowse link
G IL1B interleukin 1 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:15,844,628...15,852,652
Ensembl chr14:15,844,672...15,850,729
JBrowse link
hyaluronan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD44 CD44 molecule (IN blood group) involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:30,039,854...30,132,646
Ensembl chr 1:30,039,749...30,132,416
JBrowse link
G CEMIP cell migration inducing hyaluronidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:2,440,075...2,611,636
Ensembl chr26:2,438,706...2,519,563
JBrowse link
G CEMIP2 cell migration inducing hyaluronidase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:82,751,445...82,837,050
Ensembl chr12:82,752,995...82,837,042
JBrowse link
G FGF2 fibroblast growth factor 2 involved_in ISO (PMID:19577615) UniProt PMID:19577615 NCBI chr 7:70,089,394...70,157,423 JBrowse link
G HEXA hexosaminidase subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:11,081,985...11,130,366
Ensembl chr26:11,082,468...11,116,075
JBrowse link
G HEXB hexosaminidase subunit beta involved_in ISO (PMID:22451654) MGI PMID:22451654 NCBI chr 4:69,037,532...69,065,925
Ensembl chr 4:69,037,583...69,065,814
JBrowse link
G HYAL1 hyaluronidase 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr22:11,689,123...11,693,144
Ensembl chr22:11,688,970...11,693,183
JBrowse link
G HYAL2 hyaluronidase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:11,704,422...11,710,013
Ensembl chr22:11,703,790...11,709,454
JBrowse link
G HYAL3 hyaluronidase 3 involved_in IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chr22:11,680,189...11,688,678
Ensembl chr22:11,679,585...11,682,972
JBrowse link
G LOC103226818 hyaluronidase-4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:92,587,648...92,673,009
Ensembl chr21:92,654,174...92,672,089
JBrowse link
G LOC103244927 hyaluronan mediated motility receptor involved_in ISO (PMID:26528478) MGI PMID:26528478 NCBI chr23:65,732,343...65,765,511
Ensembl chr23:65,732,553...65,765,511
JBrowse link
G LOC103246571 beta-glucuronidase involved_in ISO (PMID:20385825) MGI PMID:20385825 NCBI chr28:1,621,293...1,646,097
Ensembl chr28:1,620,359...1,646,075
JBrowse link
G LYVE1 lymphatic vessel endothelial hyaluronan receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:54,252,203...54,268,873
Ensembl chr 1:54,253,495...54,269,598
JBrowse link
G SPAM1 sperm adhesion molecule 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:92,738,082...92,744,794
Ensembl chr21:92,738,287...92,744,715
JBrowse link
G STAB2 stabilin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:98,780,148...98,953,871
Ensembl chr11:98,779,921...98,954,913
JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:35,651,583...35,674,387
Ensembl chr 6:35,648,677...35,674,365
JBrowse link
hyaluronan metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CEMIP cell migration inducing hyaluronidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:2,440,075...2,611,636
Ensembl chr26:2,438,706...2,519,563
JBrowse link
G HAS2 hyaluronan synthase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21246657) Ensembl
MGI
PMID:21246657 GO_REF:0000107 NCBI chr 8:116,199,516...116,228,705
Ensembl chr 8:116,200,799...116,228,788
JBrowse link
G HYAL1 hyaluronidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:11,689,123...11,693,144
Ensembl chr22:11,688,970...11,693,183
JBrowse link
G IL15 interleukin 15 ISO RGD PMID:17667861 RGD:5013835 NCBI chr 7:88,548,773...88,644,977
Ensembl chr 7:88,548,671...88,645,488
JBrowse link
G ITIH1 inter-alpha-trypsin inhibitor heavy chain 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr22:14,159,702...14,174,627
Ensembl chr22:14,160,680...14,174,641
JBrowse link
G ITIH2 inter-alpha-trypsin inhibitor heavy chain 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr 9:7,748,818...7,794,932
Ensembl chr 9:7,749,464...7,794,933
JBrowse link
G ITIH3 inter-alpha-trypsin inhibitor heavy chain 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr22:14,176,656...14,191,256
Ensembl chr22:14,177,334...14,191,353
JBrowse link
G ITIH4 inter-alpha-trypsin inhibitor heavy chain 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr22:14,194,979...14,216,180
Ensembl chr22:14,195,701...14,213,603
JBrowse link
G ITIH5 inter-alpha-trypsin inhibitor heavy chain 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr 9:7,621,779...7,723,731
Ensembl chr 9:7,617,999...7,723,662
JBrowse link
G ITIH6 inter-alpha-trypsin inhibitor heavy chain family member 6 involved_in IEA InterPro GO_REF:0000002 NCBI chr  X:50,847,762...50,889,414
Ensembl chr  X:50,848,078...50,888,786
JBrowse link
G TNFAIP6 TNF alpha induced protein 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:36,792,505...36,814,271
Ensembl chr10:36,792,514...36,814,494
JBrowse link
keratan sulfate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B3GNT7 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:117,429,516...117,435,910 JBrowse link
G B4GALT4 beta-1,4-galactosyltransferase 4 involved_in ISO (PMID:17690104)
(PMID:32827291)
UniProt PMID:17690104 PMID:32827291 NCBI chr22:61,600,143...61,629,857
Ensembl chr22:61,604,044...61,630,420
JBrowse link
G CHST1 carbohydrate sulfotransferase 1 involved_in ISO (PMID:17690104) UniProt PMID:17690104 NCBI chr 1:19,678,972...19,696,466
Ensembl chr 1:19,694,243...19,695,478
JBrowse link
G CHST4 carbohydrate sulfotransferase 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:54,650,418...54,663,195
Ensembl chr 5:54,661,280...54,662,446
JBrowse link
G CHST6 carbohydrate sulfotransferase 6 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr 5:60,962,903...60,979,834 JBrowse link
keratan sulfate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GNS glucosamine (N-acetyl)-6-sulfatase ISO RGD PMID:3161730 RGD:1600571 NCBI chr11:60,390,479...60,434,266
Ensembl chr11:60,388,883...60,434,233
JBrowse link
keratan sulfate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHST1 carbohydrate sulfotransferase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:19,678,972...19,696,466
Ensembl chr 1:19,694,243...19,695,478
JBrowse link
negative regulation of hyaluronan biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP2A1 adaptor related protein complex 2 subunit alpha 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:42,933,303...42,968,963
Ensembl chr 6:42,953,693...42,969,427
JBrowse link
G CLTC clathrin heavy chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:33,751,641...33,826,415
Ensembl chr16:33,752,556...33,799,102
JBrowse link
G SMPD3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22383528) Ensembl
MGI
PMID:22383528 GO_REF:0000107 NCBI chr 5:58,965,965...59,057,823
Ensembl chr 5:59,029,093...59,059,577
JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:35,651,583...35,674,387
Ensembl chr 6:35,648,677...35,674,365
JBrowse link
peptidoglycan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LYG1 lysozyme g1 involved_in IEA InterPro GO_REF:0000002 NCBI chr14:2,986,476...3,006,837
Ensembl chr14:2,986,634...3,005,561
JBrowse link
G LYG2 lysozyme g2 involved_in IEA InterPro GO_REF:0000002 Ensembl chr14:2,948,502...2,957,081 JBrowse link
G PGLYRP1 peptidoglycan recognition protein 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:39,474,077...39,478,635
Ensembl chr 6:39,474,170...39,477,914
JBrowse link
G PGLYRP2 peptidoglycan recognition protein 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:14,072,310...14,084,014
Ensembl chr 6:14,072,423...14,082,798
JBrowse link
G PGLYRP3 peptidoglycan recognition protein 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr20:10,445,996...10,459,908
Ensembl chr20:10,446,660...10,459,478
JBrowse link
G PGLYRP4 peptidoglycan recognition protein 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr20:10,406,242...10,422,989
Ensembl chr20:10,405,138...10,422,625
JBrowse link
peptidoglycan turnover term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GCKR glucokinase regulator involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:80,069,662...80,124,038
Ensembl chr14:80,100,436...80,123,686
JBrowse link
positive regulation of hyaluronan biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EGF epidermal growth factor involved_in ISO (PMID:17324121) UniProt PMID:17324121 NCBI chr 7:57,810,110...57,911,361
Ensembl chr 7:57,811,728...57,911,516
JBrowse link
G HAS2 hyaluronan synthase 2 ISO RGD PMID:12186949 PMID:17080198 RGD:9588629 RGD:9588632 NCBI chr 8:116,199,516...116,228,705
Ensembl chr 8:116,200,799...116,228,788
JBrowse link
G NFKB1 nuclear factor kappa B subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:50,589,494...50,711,472
Ensembl chr 7:50,589,856...50,711,498
JBrowse link
G PDGFB platelet derived growth factor subunit B involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:21,865,792...21,888,068
Ensembl chr19:21,863,768...21,886,395
JBrowse link
G PTGER4 prostaglandin E receptor 4 ISO RGD PMID:17080198 RGD:9588632 NCBI chr 4:39,440,697...39,453,983
Ensembl chr 4:39,440,276...39,454,004
JBrowse link
regulation of hyaluronan biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMPD3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22383528) Ensembl
MGI
PMID:22383528 GO_REF:0000107 NCBI chr 5:58,965,965...59,057,823
Ensembl chr 5:59,029,093...59,059,577
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16766
    metabolic process 10337
      organic substance metabolic process 9877
        macromolecule metabolic process 8294
          aminoglycan metabolic process 116
            glycosaminoglycan metabolic process 103
              galactosaminoglycan metabolic process + 0
              glycosaminoglycan biosynthetic process + 59
              glycosaminoglycan catabolic process + 28
              mucopolysaccharide metabolic process + 81
              peptidoglycan metabolic process + 7
paths to the root