Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:proteoglycan biosynthetic process
go back to main search page
Accession:GO:0030166 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of proteoglycans, any glycoprotein in which the carbohydrate units are glycosaminoglycans.
Synonyms:exact_synonym: proteoglycan anabolism;   proteoglycan biosynthesis;   proteoglycan formation;   proteoglycan synthesis


show annotations for term's descendants           Sort by:
 
proteoglycan biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAN aggrecan involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2664273|PMID:3070812) Ensembl
MGI
PMID:3070812 GO_REF:0000107 MGI:2664273 NCBI chr15:88,803,436...88,875,353
Ensembl chr15:88,803,436...88,875,354
Ensembl chr15:88,803,436...88,875,354
Ensembl chr15:88,803,436...88,875,354
JBrowse link
G B3GALT6 beta-1,3-galactosyltransferase 6 involved_in IMP (PMID:29443383) UniProt PMID:29443383 NCBI chr 1:1,232,237...1,235,041
Ensembl chr 1:1,232,237...1,235,041
JBrowse link
G B4GALT7 beta-1,4-galactosyltransferase 7 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:177,600,102...177,610,330
Ensembl chr 5:177,600,132...177,610,330
JBrowse link
G BMPR1B bone morphogenetic protein receptor type 1B involved_in ISS AgBase GO_REF:0000024 NCBI chr 4:94,757,955...95,158,453
Ensembl chr 4:94,757,955...95,158,448
JBrowse link
G BMPR2 bone morphogenetic protein receptor type 2 involved_in ISS AgBase GO_REF:0000024 NCBI chr 2:202,376,310...202,567,751
Ensembl chr 2:202,376,327...202,567,751
JBrowse link
G CANT1 calcium activated nucleotidase 1 involved_in IMP
IBA
(PMID:22539336)
(PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:22539336 NCBI chr17:78,991,716...79,009,793
Ensembl chr17:78,991,716...79,009,867
JBrowse link
G CHST10 carbohydrate sulfotransferase 10 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:100,391,860...100,417,668
Ensembl chr 2:100,391,860...100,417,668
JBrowse link
G CHST11 carbohydrate sulfotransferase 11 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:104,456,948...104,762,014
Ensembl chr12:104,455,295...104,762,014
JBrowse link
G CHST12 carbohydrate sulfotransferase 12 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:2,403,489...2,448,484
Ensembl chr 7:2,403,588...2,448,484
JBrowse link
G CHST13 carbohydrate sulfotransferase 13 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:126,524,155...126,543,291
Ensembl chr 3:126,524,155...126,543,291
JBrowse link
G CHST8 carbohydrate sulfotransferase 8 involved_in
acts_upstream_of_or_within
IBA
ISO
IDA
(PMID:21873635)
(MGI:1928003|PMID:10988300)
(PMID:10988300)
GO_Central
MGI
UniProt
PMID:10988300 PMID:21873635 MGI:1928003 NCBI chr19:33,621,953...33,773,509
Ensembl chr19:33,621,953...33,773,509
JBrowse link
G CHST9 carbohydrate sulfotransferase 9 involved_in IBA
ISS
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000024 NCBI chr18:26,906,481...27,185,364
Ensembl chr18:26,906,481...27,185,308
JBrowse link
G CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 involved_in ISS (PMID:11788602) UniProt PMID:11788602 NCBI chr 8:19,404,161...19,757,908
Ensembl chr 8:19,404,161...19,758,029
JBrowse link
G CSGALNACT2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 involved_in IDA (PMID:11788602) UniProt PMID:11788602 NCBI chr10:43,138,445...43,185,308
Ensembl chr10:43,138,445...43,185,302
JBrowse link
G EXT1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (MGI:4946896|PMID:21185280) MGI PMID:21185280 MGI:4946896 NCBI chr 8:117,794,490...118,111,826
Ensembl chr 8:117,794,490...118,111,853
Ensembl chr 8:117,794,490...118,111,853
JBrowse link
G FAM20B FAM20B glycosaminoglycan xylosylkinase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:179,025,804...179,076,567
Ensembl chr 1:179,025,804...179,076,567
JBrowse link
G FOXL1 forkhead box L1 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:2153304|PMID:11555641) UniProt
MGI
PMID:11555641 GO_REF:0000024 MGI:2153304 NCBI chr16:86,578,549...86,583,478
Ensembl chr16:86,576,368...86,582,160
Ensembl chr16:86,576,368...86,582,160
JBrowse link
G GAL3ST3 galactose-3-O-sulfotransferase 3 involved_in NAS (PMID:11356829) UniProt PMID:11356829 NCBI chr11:66,040,765...66,049,161
Ensembl chr11:66,040,765...66,049,161
JBrowse link
G GAL3ST4 galactose-3-O-sulfotransferase 4 involved_in NAS (PMID:11333265) UniProt PMID:11333265 NCBI chr 7:100,159,244...100,168,617
Ensembl chr 7:100,159,244...100,168,617
JBrowse link
G IGF1 insulin like growth factor 1 involved_in IMP
IDA
(PMID:9564845)
(PMID:12746903)
AgBase
BHF-UCL
PMID:9564845 PMID:12746903 NCBI chr12:102,395,860...102,481,839
Ensembl chr12:102,395,874...102,481,744
JBrowse link
G XYLT1 xylosyltransferase 1 involved_in IDA
ISO
(PMID:11087729) UniProt
RGD
PMID:11087729 PMID:19001053 RGD:2313142 NCBI chr16:17,101,769...17,470,960
Ensembl chr16:17,101,769...17,470,960
JBrowse link
G XYLT2 xylosyltransferase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3713963|PMID:17517600) InterPro
MGI
PMID:17517600 GO_REF:0000002 MGI:3713963 NCBI chr17:50,346,126...50,361,185
Ensembl chr17:50,346,126...50,363,138
JBrowse link
chondroitin sulfate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B3GALT6 beta-1,3-galactosyltransferase 6 involved_in IEA UniProt GO_REF:0000041 NCBI chr 1:1,232,237...1,235,041
Ensembl chr 1:1,232,237...1,235,041
JBrowse link
G BCAN brevican involved_in TAS Reactome Reactome:R-HSA-2022870 NCBI chr 1:156,642,117...156,659,528
Ensembl chr 1:156,641,390...156,659,532
JBrowse link
G BGN biglycan involved_in TAS Reactome Reactome:R-HSA-2022870 NCBI chr  X:153,494,980...153,509,546
Ensembl chr  X:153,494,980...153,509,546
JBrowse link
G CHPF chondroitin polymerizing factor involved_in
acts_upstream_of_or_within
IBA
ISO
IDA
TAS
(PMID:21873635)
(MGI:5462280|PMID:22952873)
(MGI:5462286|PMID:22952769)
(PMID:12761225)
GO_Central
MGI
FlyBase
Reactome
PMID:12761225 PMID:21873635 PMID:22952769 PMID:22952873 MGI:5462280 MGI:5462286 Reactome:R-HSA-2022870 NCBI chr 2:219,538,949...219,543,809
Ensembl chr 2:219,538,948...219,543,809
JBrowse link
G CHPF2 chondroitin polymerizing factor 2 involved_in IBA
TAS
(PMID:21873635) GO_Central
Reactome
PMID:21873635 Reactome:R-HSA-2022870 NCBI chr 7:151,232,483...151,238,822
Ensembl chr 7:151,232,489...151,238,827
JBrowse link
G CHST11 carbohydrate sulfotransferase 11 involved_in
acts_upstream_of_or_within
IDA
ISO
TAS
(PMID:11056388)
(MGI:4941099|PMID:21138417)
(MGI:1354846|PMID:10722746)
UniProt
MGI
Reactome
PMID:10722746 PMID:11056388 PMID:21138417 MGI:1354846 MGI:4941099 Reactome:R-HSA-2022870 NCBI chr12:104,456,948...104,762,014
Ensembl chr12:104,455,295...104,762,014
JBrowse link
G CHST12 carbohydrate sulfotransferase 12 involved_in IDA
TAS
(PMID:10781601) UniProt
Reactome
PMID:10781601 Reactome:R-HSA-2022870 NCBI chr 7:2,403,489...2,448,484
Ensembl chr 7:2,403,588...2,448,484
JBrowse link
G CHST13 carbohydrate sulfotransferase 13 involved_in TAS
IDA
(PMID:12080076) Reactome
UniProt
PMID:12080076 Reactome:R-HSA-2022870 NCBI chr 3:126,524,155...126,543,291
Ensembl chr 3:126,524,155...126,543,291
JBrowse link
G CHST15 carbohydrate sulfotransferase 15 involved_in TAS Reactome Reactome:R-HSA-2022870 NCBI chr10:124,006,059...124,093,684
Ensembl chr10:124,007,668...124,093,598
JBrowse link
G CHST3 carbohydrate sulfotransferase 3 involved_in
acts_upstream_of_or_within
IDA
ISO
IBA
TAS
(PMID:9883891)
(MGI:1206144|PMID:9597547)
(MGI:2156294|PMID:11696535)
(PMID:21873635)
UniProt
MGI
GO_Central
Reactome
PMID:9597547 PMID:9883891 PMID:11696535 PMID:21873635 MGI:1206144 MGI:2156294 Reactome:R-HSA-2022870 NCBI chr10:71,964,395...72,013,562
Ensembl chr10:71,964,395...72,013,558
JBrowse link
G CHST7 carbohydrate sulfotransferase 7 involved_in IDA
IBA
TAS
(PMID:10781596)
(PMID:21873635)
UniProt
GO_Central
Reactome
PMID:10781596 PMID:21873635 Reactome:R-HSA-2022870 NCBI chr  X:46,573,765...46,598,496
Ensembl chr  X:46,573,765...46,598,496
JBrowse link
G CHST9 carbohydrate sulfotransferase 9 involved_in TAS Reactome Reactome:R-HSA-2022870 NCBI chr18:26,906,481...27,185,364
Ensembl chr18:26,906,481...27,185,308
JBrowse link
G CHSY1 chondroitin sulfate synthase 1 involved_in
acts_upstream_of_or_within
IBA
IDA
TAS
(PMID:21873635)
(PMID:11514575)
GO_Central
MGI
Reactome
PMID:11514575 PMID:21873635 Reactome:R-HSA-2022870 NCBI chr15:101,175,727...101,252,048
Ensembl chr15:101,175,727...101,252,048
JBrowse link
G CHSY3 chondroitin sulfate synthase 3 involved_in TAS
IBA
(PMID:21873635) Reactome
GO_Central
PMID:21873635 Reactome:R-HSA-2022870 NCBI chr 5:129,903,384...130,186,637
Ensembl chr 5:129,904,465...130,186,634
JBrowse link
G CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 involved_in IBA
TAS
IDA
(PMID:21873635)
(PMID:11514575), (PMID:12163485)
GO_Central
Reactome
UniProt
PMID:11514575 PMID:12163485 PMID:21873635 Reactome:R-HSA-2022870 NCBI chr 8:19,404,161...19,757,908
Ensembl chr 8:19,404,161...19,758,029
JBrowse link
G CSGALNACT2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 involved_in TAS
IBA
(PMID:21873635) Reactome
GO_Central
PMID:21873635 Reactome:R-HSA-2022870 NCBI chr10:43,138,445...43,185,308
Ensembl chr10:43,138,445...43,185,302
JBrowse link
G CSPG4 chondroitin sulfate proteoglycan 4 involved_in TAS Reactome Reactome:R-HSA-2022870 NCBI chr15:75,674,322...75,712,848
Ensembl chr15:75,674,322...75,712,848
JBrowse link
G CSPG5 chondroitin sulfate proteoglycan 5 involved_in TAS Reactome Reactome:R-HSA-2022870 NCBI chr 3:47,562,238...47,580,240
Ensembl chr 3:47,562,238...47,580,792
JBrowse link
G DCN decorin involved_in TAS Reactome Reactome:R-HSA-2022870 NCBI chr12:91,140,484...91,182,817
Ensembl chr12:91,140,484...91,183,217
Ensembl chr12:91,140,484...91,183,217
JBrowse link
G DSE dermatan sulfate epimerase involved_in IEA UniProt GO_REF:0000041 NCBI chr 6:116,254,171...116,444,861
Ensembl chr 6:116,254,173...116,444,861
Ensembl chr 6:116,254,173...116,444,861
JBrowse link
G NCAN neurocan involved_in TAS Reactome Reactome:R-HSA-2022870 NCBI chr19:19,211,958...19,252,233
Ensembl chr19:19,211,958...19,252,233
JBrowse link
G SLC35D1 solute carrier family 35 member D1 acts_upstream_of_or_within ISO (MGI:3771453|PMID:17952091) MGI PMID:17952091 MGI:3771453 NCBI chr 1:66,999,350...67,054,423
Ensembl chr 1:66,999,350...67,054,148
JBrowse link
G UGDH UDP-glucose 6-dehydrogenase involved_in ISS UniProt GO_REF:0000024 NCBI chr 4:39,498,755...39,527,439
Ensembl chr 4:39,498,755...39,528,311
JBrowse link
G VCAN versican involved_in TAS Reactome Reactome:R-HSA-2022870 NCBI chr 5:83,471,744...83,582,302
Ensembl chr 5:83,471,618...83,582,303
JBrowse link
G XYLT1 xylosyltransferase 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr16:17,101,769...17,470,960
Ensembl chr16:17,101,769...17,470,960
JBrowse link
G XYLT2 xylosyltransferase 2 involved_in IEA UniProt GO_REF:0000041 NCBI chr17:50,346,126...50,361,185
Ensembl chr17:50,346,126...50,363,138
JBrowse link
chondroitin sulfate proteoglycan biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B3GAT1 beta-1,3-glucuronyltransferase 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:134,378,504...134,412,242
Ensembl chr11:134,378,504...134,412,242
JBrowse link
G B3GAT2 beta-1,3-glucuronyltransferase 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:70,856,679...70,957,060
Ensembl chr 6:70,856,679...70,957,060
JBrowse link
G B3GAT3 beta-1,3-glucuronyltransferase 3 involved_in
acts_upstream_of_or_within
IMP
IDA
IBA
(PMID:25893793)
(PMID:21763480)
(PMID:21873635)
UniProt
MGI
GO_Central
PMID:21763480 PMID:21873635 PMID:25893793 NCBI chr11:62,615,296...62,621,986
Ensembl chr11:62,615,296...62,622,154
JBrowse link
G CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 involved_in ISS (PMID:11788602) UniProt PMID:11788602 NCBI chr 8:19,404,161...19,757,908
Ensembl chr 8:19,404,161...19,758,029
JBrowse link
G CSGALNACT2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 involved_in
acts_upstream_of_or_within
IDA
ISO
(PMID:11788602)
(MGI:4941099|PMID:21138417)
UniProt
MGI
PMID:11788602 PMID:21138417 MGI:4941099 NCBI chr10:43,138,445...43,185,308
Ensembl chr10:43,138,445...43,185,302
JBrowse link
G CYTL1 cytokine like 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3758399|PMID:17644814) Ensembl
MGI
PMID:17644814 GO_REF:0000107 MGI:3758399 NCBI chr 4:5,014,586...5,019,470
Ensembl chr 4:5,014,586...5,019,458
JBrowse link
G IGF1 insulin like growth factor 1 acts_upstream_of_or_within ISO (MGI:3758399|PMID:17644814) MGI PMID:17644814 MGI:3758399 NCBI chr12:102,395,860...102,481,839
Ensembl chr12:102,395,874...102,481,744
JBrowse link
G PXYLP1 2-phosphoxylose phosphatase 1 involved_in IMP
IBA
(PMID:24425863)
(PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:24425863 NCBI chr 3:141,231,825...141,294,924
Ensembl chr 3:141,228,726...141,367,753
JBrowse link
G XYLT1 xylosyltransferase 1 involved_in IBA
IMP
(PMID:21873635)
(PMID:17189265)
GO_Central
UniProt
PMID:17189265 PMID:21873635 NCBI chr16:17,101,769...17,470,960
Ensembl chr16:17,101,769...17,470,960
JBrowse link
G XYLT2 xylosyltransferase 2 involved_in IMP
IBA
(PMID:17189265), (PMID:26027496)
(PMID:21873635)
UniProt
GO_Central
PMID:17189265 PMID:21873635 PMID:26027496 NCBI chr17:50,346,126...50,361,185
Ensembl chr17:50,346,126...50,363,138
JBrowse link
chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 involved_in IDA (PMID:12163485) UniProt PMID:12163485 NCBI chr 8:19,404,161...19,757,908
Ensembl chr 8:19,404,161...19,758,029
JBrowse link
G CSGALNACT2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 involved_in TAS (PMID:11788602) UniProt PMID:11788602 NCBI chr10:43,138,445...43,185,308
Ensembl chr10:43,138,445...43,185,302
JBrowse link
dermatan sulfate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCAN brevican involved_in TAS Reactome Reactome:R-HSA-2022923 NCBI chr 1:156,642,117...156,659,528
Ensembl chr 1:156,641,390...156,659,532
JBrowse link
G BGN biglycan involved_in TAS Reactome Reactome:R-HSA-2022923 NCBI chr  X:153,494,980...153,509,546
Ensembl chr  X:153,494,980...153,509,546
JBrowse link
G CHST12 carbohydrate sulfotransferase 12 involved_in IDA (PMID:10781601) UniProt PMID:10781601 NCBI chr 7:2,403,489...2,448,484
Ensembl chr 7:2,403,588...2,448,484
JBrowse link
G CHST14 carbohydrate sulfotransferase 14 involved_in
acts_upstream_of_or_within
TAS
IDA
(PMID:11470797) Reactome
MGI
PMID:11470797 Reactome:R-HSA-2022923 NCBI chr15:40,470,984...40,473,158
Ensembl chr15:40,470,998...40,474,571
Ensembl chr15:40,470,998...40,474,571
JBrowse link
G CSPG4 chondroitin sulfate proteoglycan 4 involved_in TAS Reactome Reactome:R-HSA-2022923 NCBI chr15:75,674,322...75,712,848
Ensembl chr15:75,674,322...75,712,848
JBrowse link
G CSPG5 chondroitin sulfate proteoglycan 5 involved_in TAS Reactome Reactome:R-HSA-2022923 NCBI chr 3:47,562,238...47,580,240
Ensembl chr 3:47,562,238...47,580,792
JBrowse link
G DCN decorin involved_in TAS Reactome Reactome:R-HSA-2022923 NCBI chr12:91,140,484...91,182,817
Ensembl chr12:91,140,484...91,183,217
Ensembl chr12:91,140,484...91,183,217
JBrowse link
G DSE dermatan sulfate epimerase involved_in TAS
IDA
(PMID:16505484) Reactome
UniProt
PMID:16505484 Reactome:R-HSA-2022923 NCBI chr 6:116,254,171...116,444,861
Ensembl chr 6:116,254,173...116,444,861
Ensembl chr 6:116,254,173...116,444,861
JBrowse link
G DSEL dermatan sulfate epimerase like involved_in TAS Reactome Reactome:R-HSA-2022923 NCBI chr18:67,506,587...67,516,720
Ensembl chr18:67,506,587...67,516,720
JBrowse link
G NCAN neurocan involved_in TAS Reactome Reactome:R-HSA-2022923 NCBI chr19:19,211,958...19,252,233
Ensembl chr19:19,211,958...19,252,233
JBrowse link
G UST uronyl 2-sulfotransferase involved_in TAS Reactome Reactome:R-HSA-2022923 NCBI chr 6:148,745,891...149,076,990
Ensembl chr 6:148,747,030...149,076,990
JBrowse link
G VCAN versican involved_in TAS Reactome Reactome:R-HSA-2022923 NCBI chr 5:83,471,744...83,582,302
Ensembl chr 5:83,471,618...83,582,303
JBrowse link
dermatan sulfate proteoglycan biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B3GAT3 beta-1,3-glucuronyltransferase 3 involved_in
acts_upstream_of_or_within
IMP
IDA
(PMID:25893793)
(PMID:21763480)
UniProt
MGI
PMID:21763480 PMID:25893793 NCBI chr11:62,615,296...62,621,986
Ensembl chr11:62,615,296...62,622,154
JBrowse link
G CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 involved_in ISS (PMID:11788602) UniProt PMID:11788602 NCBI chr 8:19,404,161...19,757,908
Ensembl chr 8:19,404,161...19,758,029
JBrowse link
G CSGALNACT2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 involved_in IDA (PMID:11788602) UniProt PMID:11788602 NCBI chr10:43,138,445...43,185,308
Ensembl chr10:43,138,445...43,185,302
JBrowse link
dermatan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CSGALNACT2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 involved_in TAS (PMID:11788602) UniProt PMID:11788602 NCBI chr10:43,138,445...43,185,308
Ensembl chr10:43,138,445...43,185,302
JBrowse link
heparan sulfate proteoglycan biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B3GALT6 beta-1,3-galactosyltransferase 6 involved_in IEA UniProt GO_REF:0000041 NCBI chr 1:1,232,237...1,235,041
Ensembl chr 1:1,232,237...1,235,041
JBrowse link
G B3GAT3 beta-1,3-glucuronyltransferase 3 involved_in
acts_upstream_of_or_within
IMP
IDA
(PMID:25893793)
(PMID:21763480)
UniProt
MGI
PMID:21763480 PMID:25893793 NCBI chr11:62,615,296...62,621,986
Ensembl chr11:62,615,296...62,622,154
JBrowse link
G DSE dermatan sulfate epimerase involved_in IEA UniProt GO_REF:0000041 NCBI chr 6:116,254,171...116,444,861
Ensembl chr 6:116,254,173...116,444,861
Ensembl chr 6:116,254,173...116,444,861
JBrowse link
G EXT1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within
ISS
ISO
IDA
IEA
(MGI:4431165|PMID:20080592)
(PMID:10639137), (PMID:9620772)
UniProt
MGI
BHF-UCL
InterPro
PMID:9620772 PMID:10639137 PMID:20080592 GO_REF:0000002 GO_REF:0000024 MGI:4431165 NCBI chr 8:117,794,490...118,111,826
Ensembl chr 8:117,794,490...118,111,853
Ensembl chr 8:117,794,490...118,111,853
JBrowse link
G EXT2 exostosin glycosyltransferase 2 involved_in
acts_upstream_of_or_within
IMP
ISO
IEA
(PMID:17761672)
(MGI:3608483|PMID:16236767)
BHF-UCL
MGI
InterPro
PMID:16236767 PMID:17761672 GO_REF:0000002 MGI:3608483 NCBI chr11:44,095,678...44,251,962
Ensembl chr11:44,095,673...44,251,981
Ensembl chr11:44,095,673...44,251,981
JBrowse link
G EXTL2 exostosin like glycosyltransferase 2 involved_in IEA UniProt GO_REF:0000041 NCBI chr 1:100,872,372...100,895,411
Ensembl chr 1:100,872,372...100,895,179
JBrowse link
G EXTL3 exostosin like glycosyltransferase 3 involved_in IEA
IDA
(PMID:28132690), (PMID:28148688) UniProt PMID:28132690 PMID:28148688 GO_REF:0000041 NCBI chr 8:28,607,736...28,755,599
Ensembl chr 8:28,600,469...28,755,599
JBrowse link
G GLCE glucuronic acid epimerase involved_in IDA
ISS
IBA
IEA
(PMID:20118238), (PMID:30872481)
(PMID:21873635)
UniProt
GO_Central
InterPro
PMID:20118238 PMID:21873635 PMID:30872481 GO_REF:0000002 GO_REF:0000024 GO_REF:0000041 NCBI chr15:69,160,555...69,272,209
Ensembl chr15:69,160,584...69,272,217
JBrowse link
G HS3ST3B1 heparan sulfate-glucosamine 3-sulfotransferase 3B1 involved_in TAS (PMID:9988768) PINC PMID:9988768 NCBI chr17:14,301,081...14,349,406
Ensembl chr17:14,301,081...14,349,404
JBrowse link
G HS6ST1 heparan sulfate 6-O-sulfotransferase 1 acts_upstream_of_or_within ISO (MGI:3715036|PMID:17405882) MGI PMID:17405882 MGI:3715036 NCBI chr 2:128,265,480...128,318,868
Ensembl chr 2:128,236,716...128,318,868
JBrowse link
G LIPC lipase C, hepatic type ISO RGD PMID:15102889 RGD:1580511 NCBI chr15:58,410,457...58,569,844
Ensembl chr15:58,410,569...58,569,844
JBrowse link
G NDST1 N-deacetylase and N-sulfotransferase 1 involved_in ISO PMID:9915799 UniProt PMID:9915799 RGD:12907548 NCBI chr 5:150,497,779...150,558,211
Ensembl chr 5:150,485,818...150,558,211
JBrowse link
G NDST2 N-deacetylase and N-sulfotransferase 2 acts_upstream_of_or_within ISO (MGI:1343737|PMID:10466727) MGI PMID:10466727 MGI:1343737 NCBI chr10:73,801,916...73,811,820
Ensembl chr10:73,796,514...73,811,651
Ensembl chr10:73,796,514...73,811,651
JBrowse link
G NDST3 N-deacetylase and N-sulfotransferase 3 involved_in IDA (PMID:9915799) UniProt PMID:9915799 NCBI chr 4:118,033,322...118,258,945
Ensembl chr 4:118,033,618...118,258,634
JBrowse link
G UGDH UDP-glucose 6-dehydrogenase involved_in ISS UniProt GO_REF:0000024 NCBI chr 4:39,498,755...39,527,439
Ensembl chr 4:39,498,755...39,528,311
JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (MGI:5498591|PMID:23760952) MGI PMID:23760952 MGI:5498591 NCBI chr 1:160,400,564...160,428,674
Ensembl chr 1:160,400,564...160,428,670
JBrowse link
G XYLT1 xylosyltransferase 1 involved_in IMP
IBA
IEA
(PMID:17189265)
(PMID:21873635)
UniProt
GO_Central
PMID:17189265 PMID:21873635 GO_REF:0000041 NCBI chr16:17,101,769...17,470,960
Ensembl chr16:17,101,769...17,470,960
JBrowse link
G XYLT2 xylosyltransferase 2 involved_in IBA
IEA
IMP
(PMID:21873635)
(PMID:17189265), (PMID:26027496)
GO_Central
UniProt
PMID:17189265 PMID:21873635 PMID:26027496 GO_REF:0000041 NCBI chr17:50,346,126...50,361,185
Ensembl chr17:50,346,126...50,363,138
JBrowse link
heparan sulfate proteoglycan biosynthetic process, enzymatic modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HS2ST1 heparan sulfate 2-O-sulfotransferase 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:86,914,635...87,109,982
Ensembl chr 1:86,914,635...87,109,982
JBrowse link
G HS3ST3B1 heparan sulfate-glucosamine 3-sulfotransferase 3B1 involved_in TAS (PMID:9988767) PINC PMID:9988767 NCBI chr17:14,301,081...14,349,406
Ensembl chr17:14,301,081...14,349,404
JBrowse link
G HS3ST5 heparan sulfate-glucosamine 3-sulfotransferase 5 involved_in IDA (PMID:12138164) UniProt PMID:12138164 NCBI chr 6:114,055,586...114,343,023
Ensembl chr 6:114,055,586...114,343,045
JBrowse link
G HS6ST1 heparan sulfate 6-O-sulfotransferase 1 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:1353793|PMID:10644753)
GO_Central
MGI
PMID:10644753 PMID:21873635 MGI:1353793 NCBI chr 2:128,265,480...128,318,868
Ensembl chr 2:128,236,716...128,318,868
JBrowse link
G HS6ST2 heparan sulfate 6-O-sulfotransferase 2 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:1353793|PMID:10644753)
GO_Central
MGI
PMID:10644753 PMID:21873635 MGI:1353793 NCBI chr  X:132,626,012...132,961,370
Ensembl chr  X:132,626,016...132,961,395
JBrowse link
G HS6ST3 heparan sulfate 6-O-sulfotransferase 3 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:1353793|PMID:10644753)
GO_Central
MGI
PMID:10644753 PMID:21873635 MGI:1353793 NCBI chr13:96,090,107...96,839,562
Ensembl chr13:96,090,839...96,839,562
Ensembl chr13:96,090,839...96,839,562
JBrowse link
heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 involved_in NAS (PMID:11514575) UniProt PMID:11514575 NCBI chr 8:19,404,161...19,757,908
Ensembl chr 8:19,404,161...19,758,029
JBrowse link
G EXT1 exostosin glycosyltransferase 1 involved_in IMP (PMID:17761672) BHF-UCL PMID:17761672 NCBI chr 8:117,794,490...118,111,826
Ensembl chr 8:117,794,490...118,111,853
Ensembl chr 8:117,794,490...118,111,853
JBrowse link
G EXT2 exostosin glycosyltransferase 2 involved_in IMP (PMID:17761672) BHF-UCL PMID:17761672 NCBI chr11:44,095,678...44,251,962
Ensembl chr11:44,095,673...44,251,981
Ensembl chr11:44,095,673...44,251,981
JBrowse link
G HS2ST1 heparan sulfate 2-O-sulfotransferase 1 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:2150438|PMID:11457822)
GO_Central
MGI
PMID:11457822 PMID:21873635 MGI:2150438 NCBI chr 1:86,914,635...87,109,982
Ensembl chr 1:86,914,635...87,109,982
JBrowse link
G NDST1 N-deacetylase and N-sulfotransferase 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:150,497,779...150,558,211
Ensembl chr 5:150,485,818...150,558,211
JBrowse link
G NDST2 N-deacetylase and N-sulfotransferase 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:73,801,916...73,811,820
Ensembl chr10:73,796,514...73,811,651
Ensembl chr10:73,796,514...73,811,651
JBrowse link
G NDST3 N-deacetylase and N-sulfotransferase 3 involved_in IDA
IBA
(PMID:9915799)
(PMID:21873635)
UniProt
GO_Central
PMID:9915799 PMID:21873635 NCBI chr 4:118,033,322...118,258,945
Ensembl chr 4:118,033,618...118,258,634
JBrowse link
G NDST4 N-deacetylase and N-sulfotransferase 4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:114,824,122...115,114,133
Ensembl chr 4:114,827,763...115,113,876
JBrowse link
negative regulation of proteoglycan biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLC2A10 solute carrier family 2 member 10 acts_upstream_of_or_within IMP (PMID:16550171) ARUK-UCL PMID:16550171 NCBI chr20:46,708,358...46,736,347
Ensembl chr20:46,709,649...46,736,347
JBrowse link
positive regulation of heparan sulfate proteoglycan biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 involved_in IMP (PMID:15853773) BHF-UCL PMID:15853773 NCBI chr 3:41,199,422...41,240,445
Ensembl chr 3:41,194,741...41,260,096
JBrowse link
G PXYLP1 2-phosphoxylose phosphatase 1 involved_in IMP (PMID:24425863) UniProt PMID:24425863 NCBI chr 3:141,231,825...141,294,924
Ensembl chr 3:141,228,726...141,367,753
JBrowse link
G TCF7L2 transcription factor 7 like 2 involved_in IMP (PMID:15853773) BHF-UCL PMID:15853773 NCBI chr10:112,950,247...113,167,678
Ensembl chr10:112,950,247...113,167,678
JBrowse link
positive regulation of proteoglycan biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MUSTN1 musculoskeletal, embryonic nuclear protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5703727|PMID:19410023) MGI
Ensembl
PMID:19410023 GO_REF:0000107 MGI:5703727 NCBI chr 3:52,833,121...52,835,019
Ensembl chr 3:52,833,114...52,835,019
JBrowse link
G SLC2A10 solute carrier family 2 member 10 acts_upstream_of_or_within IMP (PMID:16550171) ARUK-UCL PMID:16550171 NCBI chr20:46,708,358...46,736,347
Ensembl chr20:46,709,649...46,736,347
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18673
    metabolic process 12208
      primary metabolic process 10935
        protein metabolic process 6073
          glycoprotein metabolic process 432
            proteoglycan metabolic process 94
              proteoglycan biosynthetic process 67
                chondroitin sulfate proteoglycan biosynthetic process + 32
                dermatan sulfate proteoglycan biosynthetic process + 15
                heparan sulfate proteoglycan biosynthetic process + 27
                negative regulation of proteoglycan biosynthetic process 1
                positive regulation of proteoglycan biosynthetic process + 5
Path 2
Term Annotations click to browse term
  biological_process 18673
    metabolic process 12208
      organic substance metabolic process 11727
        organic substance biosynthetic process 6488
          macromolecule biosynthetic process 5293
            cellular macromolecule biosynthetic process 5228
              glycoprotein biosynthetic process 350
                proteoglycan biosynthetic process 67
                  chondroitin sulfate proteoglycan biosynthetic process + 32
                  dermatan sulfate proteoglycan biosynthetic process + 15
                  heparan sulfate proteoglycan biosynthetic process + 27
                  negative regulation of proteoglycan biosynthetic process 1
                  positive regulation of proteoglycan biosynthetic process + 5
paths to the root