Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:sphingolipid biosynthetic process
go back to main search page
Accession:GO:0030148 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid).
Synonyms:exact_synonym: sphingolipid anabolism;   sphingolipid biosynthesis;   sphingolipid formation;   sphingolipid synthesis
 xref: MetaCyc:PWY-5129


show annotations for term's descendants           Sort by:
 
sphingolipid biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acer1 alkaline ceramidase 1 ISO (PMID:17713573) RGD PMID:17713573 NCBI chr 9:10,061,978...10,093,588
Ensembl chr 9:10,061,978...10,093,588
JBrowse link
G Cerkl ceramide kinase-like ISO MGI:MGI:5461515 (MGI:MGI:5571022|PMID:23501591) RGD PMID:23501591 MGI:MGI:5571022 NCBI chr 3:66,268,835...66,395,615
Ensembl chr 3:66,268,947...66,394,764
JBrowse link
G Cers1 ceramide synthase 1 ISO (PMID:12105227) RGD PMID:12105227 NCBI chr16:20,845,580...20,860,789
Ensembl chr16:20,845,576...20,860,789
JBrowse link
G Cers2 ceramide synthase 2 ISO (MGI:MGI:3696894|PMID:15823095) RGD PMID:15823095 MGI:MGI:3696894 NCBI chr 2:196,487,656...196,495,930
Ensembl chr 2:196,487,656...196,496,986
JBrowse link
G Cers3 ceramide synthase 3 ISO (MGI:MGI:3692343|PMID:16753040) RGD PMID:16753040 MGI:MGI:3692343 NCBI chr 1:127,706,618...127,781,041
Ensembl chr 1:127,648,234...127,781,017
JBrowse link
G Cers4 ceramide synthase 4 ISO (MGI:MGI:3696894|PMID:15823095) RGD PMID:15823095 MGI:MGI:3696894 NCBI chr12:4,439,750...4,474,759
Ensembl chr12:4,439,750...4,474,729
JBrowse link
G Cers5 ceramide synthase 5 ISO (MGI:MGI:3696894|PMID:15823095) RGD PMID:15823095 MGI:MGI:3696894 NCBI chr 7:141,386,391...141,424,375
Ensembl chr 7:141,386,391...141,424,343
JBrowse link
G Cers6 ceramide synthase 6 ISO (MGI:MGI:3696894|PMID:15823095) RGD PMID:15823095 MGI:MGI:3696894 NCBI chr 3:55,094,240...55,338,370
Ensembl chr 3:55,094,637...55,338,445
JBrowse link
G Degs2 delta(4)-desaturase, sphingolipid 2 ISO SGD:S000002705 (MGI:MGI:3505861|PMID:11937514) RGD PMID:11937514 MGI:MGI:3505861 NCBI chr 6:132,591,968...132,608,600
Ensembl chr 6:132,591,969...132,608,600
JBrowse link
G Elovl1 ELOVL fatty acid elongase 1 ISO
IBA
(PMID:20937905)
PMID:21873635
(MGI:MGI:4944052|PMID:20253178)
RGD PMID:20253178, PMID:20937905, PMID:21873635 MGI:MGI:4944052, RGD:13792537 NCBI chr 5:137,255,868...137,260,486
Ensembl chr 5:137,255,908...137,260,483
JBrowse link
G Elovl2 ELOVL fatty acid elongase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:21,382,461...21,422,413
Ensembl chr17:21,382,455...21,422,407
JBrowse link
G Elovl3 ELOVL fatty acid elongase 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:265,883,353...265,887,181
Ensembl chr 1:265,883,355...265,887,226
JBrowse link
G Elovl4 ELOVL fatty acid elongase 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:91,310,690...91,338,625
Ensembl chr 8:91,310,630...91,338,843
JBrowse link
G Elovl5 ELOVL fatty acid elongase 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:85,220,941...85,287,449
Ensembl chr 8:85,259,982...85,285,983
JBrowse link
G Elovl6 ELOVL fatty acid elongase 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:234,187,490...234,296,124
Ensembl chr 2:234,189,105...234,296,145
Ensembl chr 2:234,189,105...234,296,145
JBrowse link
G Elovl7 ELOVL fatty acid elongase 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:40,373,211...40,386,643
Ensembl chr 2:40,373,211...40,386,669
JBrowse link
G Hacd1 3-hydroxyacyl-CoA dehydratase 1 ISO
IBA
UniProtKB:P40857 (PMID:18554506)
PMID:21873635
RGD PMID:18554506, PMID:21873635 RGD:13792537 NCBI chr17:81,173,238...81,196,012
Ensembl chr17:81,173,713...81,187,739
JBrowse link
G Hacd2 3-hydroxyacyl-CoA dehydratase 2 ISO
IBA
UniProtKB:P40857 (PMID:18554506)
PMID:21873635
RGD PMID:18554506, PMID:21873635 RGD:13792537 NCBI chr11:68,893,684...68,985,635
Ensembl chr11:68,894,445...68,989,988
JBrowse link
G Hacd3 3-hydroxyacyl-CoA dehydratase 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:70,471,572...70,509,874
Ensembl chr 8:70,471,572...70,509,874
JBrowse link
G Hacd4 3-hydroxyacyl-CoA dehydratase 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:106,728,401...106,758,068
Ensembl chr 5:106,732,513...106,758,032
JBrowse link
G Kdsr 3-ketodihydrosphingosine reductase ISO
IBA
SGD:S000000469 (MGI:MGI:3522414|PMID:15328338)
PMID:21873635
RGD PMID:15328338, PMID:21873635 MGI:MGI:3522414, RGD:13792537 NCBI chr13:26,779,386...26,812,271
Ensembl chr13:26,780,633...26,812,215
JBrowse link
G LOC102549542 elongation of very long chain fatty acids protein 6-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:234,375,172...234,486,639
Ensembl chr 2:234,375,315...234,483,149
JBrowse link
G Samd8 sterile alpha motif domain containing 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:2,685,504...2,731,062
Ensembl chr15:2,685,511...2,731,462
JBrowse link
G Sgms1 sphingomyelin synthase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:250,692,448...250,951,685
Ensembl chr 1:250,691,370...250,951,697
JBrowse link
G Sgms2 sphingomyelin synthase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:236,458,276...236,530,667
Ensembl chr 2:236,458,279...236,480,502
JBrowse link
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 ISO (PMID:25332431) RGD PMID:25332431 NCBI chr17:11,856,525...11,895,566
Ensembl chr17:11,856,525...11,895,566
JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 ISO
ISS
(PMID:25332431), (PMID:26573920)
GO_REF:0000024
(MGI:MGI:5917779|PMID:28698261)
RGD
UniProt
PMID:25332431, PMID:26573920, PMID:28698261 GO_REF:0000024, MGI:MGI:5917779 NCBI chr 6:111,334,408...111,417,960
Ensembl chr 6:111,339,136...111,417,954
JBrowse link
G Sptssb serine palmitoyltransferase, small subunit B ISO MGI:MGI:5689843 (MGI:MGI:5689923|PMID:26438849) RGD PMID:26438849 MGI:MGI:5689923 NCBI chr 2:166,654,036...166,682,325
Ensembl chr 2:166,654,043...166,682,325
JBrowse link
ceramide biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agk acylglycerol kinase ISO
IBA
(MGI:MGI:3054595|PMID:15252046)
PMID:21873635
RGD PMID:15252046, PMID:21873635 MGI:MGI:3054595, RGD:13792537 NCBI chr 4:68,483,345...68,561,518
Ensembl chr 4:68,483,320...68,560,801
JBrowse link
G Alox12b arachidonate 12-lipoxygenase, 12R type IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:3789553|PMID:17403930)
Ensembl
UniProt
RGD
PMID:17403930 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3789553 NCBI chr10:55,744,646...55,756,524
Ensembl chr10:55,744,588...55,756,566
JBrowse link
G Aloxe3 arachidonate lipoxygenase 3 ISO
ISS
(MGI:MGI:5488571|PMID:22832496)
GO_REF:0000024
RGD
UniProt
PMID:22832496 GO_REF:0000024, MGI:MGI:5488571 NCBI chr10:55,711,996...55,735,915
Ensembl chr10:55,712,043...55,735,911
JBrowse link
G Asah1 N-acylsphingosine amidohydrolase 1 IEA
ISO
ISS
GO_REF:0000107
(PMID:12764132), (PMID:12815059)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:12764132, PMID:12815059 GO_REF:0000024, GO_REF:0000107 NCBI chr16:53,998,604...54,030,006
Ensembl chr16:53,998,560...54,040,836
JBrowse link
G Asah2 N-acylsphingosine amidohydrolase 2 IDA
ISO
PMID:11278489
(MGI:MGI:6274955|PMID:21613224)
(PMID:11278489), (PMID:17475390)
PMID:15123644
RGD PMID:11278489, PMID:17475390, PMID:21613224, PMID:11278489, PMID:15123644 MGI:MGI:6274955, RGD:13838803, RGD:13838793 NCBI chr 1:250,557,042...250,665,083
Ensembl chr 1:250,557,044...250,630,677
JBrowse link
G Cers1 ceramide synthase 1 ISO (PMID:12105227), (PMID:12869556), (PMID:15823095), (PMID:17548428), (PMID:18541923), (PMID:24782409)
(MGI:MGI:3696321|PMID:16951403), (MGI:MGI:3764760|PMID:17977534), (MGI:MGI:5755322|PMID:26620563)
RGD PMID:12105227, PMID:12869556, PMID:15823095, PMID:16951403, PMID:17548428, PMID:17977534, PMID:18541923, PMID:24782409, PMID:26620563 MGI:MGI:3696321, MGI:MGI:3764760, MGI:MGI:5755322 NCBI chr16:20,845,580...20,860,789
Ensembl chr16:20,845,576...20,860,789
JBrowse link
G Cers2 ceramide synthase 2 ISO
IBA
(PMID:17977534), (PMID:18165233), (PMID:29632068)
PMID:21873635
(MGI:MGI:3696894|PMID:15823095), (MGI:MGI:5755322|PMID:26620563)
RGD PMID:15823095, PMID:17977534, PMID:18165233, PMID:26620563, PMID:29632068, PMID:21873635 MGI:MGI:3696894, MGI:MGI:5755322, RGD:13792537 NCBI chr 2:196,487,656...196,495,930
Ensembl chr 2:196,487,656...196,496,986
JBrowse link
G Cers3 ceramide synthase 3 ISO
IBA
(PMID:17977534), (PMID:22038835), (PMID:23754960)
PMID:21873635
(MGI:MGI:5303015|PMID:22038835)
RGD PMID:17977534, PMID:22038835, PMID:23754960, PMID:21873635 MGI:MGI:5303015, RGD:13792537 NCBI chr 1:127,706,618...127,781,041
Ensembl chr 1:127,648,234...127,781,017
JBrowse link
G Cers4 ceramide synthase 4 ISO
IBA
(MGI:MGI:2679796|PMID:12912983), (MGI:MGI:3696894|PMID:15823095)
PMID:21873635
(PMID:17977534), (PMID:29632068)
RGD PMID:12912983, PMID:15823095, PMID:17977534, PMID:29632068, PMID:21873635 MGI:MGI:2679796, MGI:MGI:3696894, RGD:13792537 NCBI chr12:4,439,750...4,474,759
Ensembl chr12:4,439,750...4,474,729
JBrowse link
G Cers5 ceramide synthase 5 ISO
IBA
(PMID:16951403), (PMID:29632068)
PMID:21873635
(MGI:MGI:3696624|PMID:16100120), (MGI:MGI:3722529|PMID:17609214), (MGI:MGI:3764760|PMID:17977534)
RGD PMID:16100120, PMID:16951403, PMID:17609214, PMID:17977534, PMID:29632068, PMID:21873635 MGI:MGI:3696624, MGI:MGI:3722529, MGI:MGI:3764760, RGD:13792537 NCBI chr 7:141,386,391...141,424,375
Ensembl chr 7:141,386,391...141,424,343
JBrowse link
G Cers6 ceramide synthase 6 ISO
IBA
(PMID:17609214), (PMID:17977534)
PMID:21873635
(MGI:MGI:3696894|PMID:15823095), (MGI:MGI:5513027|PMID:23760501), (MGI:MGI:5755322|PMID:26620563)
RGD PMID:15823095, PMID:17609214, PMID:17977534, PMID:23760501, PMID:26620563, PMID:21873635 MGI:MGI:3696894, MGI:MGI:5513027, MGI:MGI:5755322, RGD:13792537 NCBI chr 3:55,094,240...55,338,370
Ensembl chr 3:55,094,637...55,338,445
JBrowse link
G Cyp4f39 cytochrome P450, family 4, subfamily f, polypeptide 39 ISO
IBA
(PMID:26056268)
PMID:21873635
RGD PMID:26056268, PMID:21873635 RGD:13792537 NCBI chr 7:14,435,024...14,514,960
Ensembl chr 7:14,441,476...14,515,212
JBrowse link
G Degs1 delta(4)-desaturase, sphingolipid 1 ISO
IBA
MGI:MGI:3529540 (MGI:MGI:5466789|PMID:22984457)
PMID:21873635
RGD PMID:22984457, PMID:21873635 MGI:MGI:5466789, RGD:13792537 NCBI chr13:100,665,265...100,672,731
Ensembl chr13:100,666,075...100,672,731
JBrowse link
G Degs2 delta(4)-desaturase, sphingolipid 2 ISO
IBA
(MGI:MGI:3694278|PMID:16571104)
PMID:21873635
RGD PMID:16571104, PMID:21873635 MGI:MGI:3694278, RGD:13792537 NCBI chr 6:132,591,968...132,608,600
Ensembl chr 6:132,591,969...132,608,600
JBrowse link
G Elovl1 ELOVL fatty acid elongase 1 ISO (MGI:MGI:5532629|PMID:23689133) RGD PMID:23689133 MGI:MGI:5532629 NCBI chr 5:137,255,868...137,260,486
Ensembl chr 5:137,255,908...137,260,483
JBrowse link
G Fa2h fatty acid 2-hydroxylase ISS
ISO
GO_REF:0000024
(MGI:MGI:6245295|PMID:22517924)
(PMID:15337768)
UniProt
RGD
PMID:15337768, PMID:22517924 GO_REF:0000024, MGI:MGI:6245295 NCBI chr19:43,545,380...43,596,788
Ensembl chr19:43,545,378...43,596,801
JBrowse link
G Gba glucosylceramidase beta ISO (PMID:19279011) RGD PMID:19279011 NCBI chr 2:188,511,781...188,522,602
Ensembl chr 2:188,516,582...188,522,601
JBrowse link
G LOC498300 similar to degenerative spermatocyte homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:99,369,102...99,374,051
Ensembl chr13:99,369,126...99,374,033
JBrowse link
G P2rx1 purinergic receptor P2X 1 ISO (MGI:MGI:3640029|PMID:16325464) RGD PMID:16325464 MGI:MGI:3640029 NCBI chr10:59,566,268...59,581,328
Ensembl chr10:59,566,223...59,581,325
JBrowse link
G P2rx7 purinergic receptor P2X 7 ISO (MGI:MGI:3640029|PMID:16325464) RGD PMID:16325464 MGI:MGI:3640029 NCBI chr12:39,353,613...39,396,042
Ensembl chr12:39,353,613...39,396,042
JBrowse link
G RGD1564463 similar to Mdes protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:99,374,006...99,395,804
Ensembl chr13:99,387,950...99,395,842
JBrowse link
G Samd8 sterile alpha motif domain containing 8 ISO
IBA
(PMID:19506037)
PMID:21873635
MGI:MGI:5749225 (MGI:MGI:5632043|PMID:25605874), (MGI:MGI:5707904|PMID:25667419)
RGD PMID:19506037, PMID:25605874, PMID:25667419, PMID:21873635 MGI:MGI:5632043, MGI:MGI:5707904, RGD:13792537 NCBI chr15:2,685,504...2,731,062
Ensembl chr15:2,685,511...2,731,462
JBrowse link
G Sgms1 sphingomyelin synthase 1 ISO
IBA
(MGI:MGI:5632043|PMID:25605874)
PMID:21873635
(PMID:25605874)
RGD PMID:25605874, PMID:21873635 MGI:MGI:5632043, RGD:13792537 NCBI chr 1:250,692,448...250,951,685
Ensembl chr 1:250,691,370...250,951,697
JBrowse link
G Sgms2 sphingomyelin synthase 2 ISO
IBA
IEA
MGI:MGI:4818459 (MGI:MGI:5632043|PMID:25605874)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:25605874, PMID:21873635 GO_REF:0000107, MGI:MGI:5632043, RGD:13792537 NCBI chr 2:236,458,276...236,530,667
Ensembl chr 2:236,458,279...236,480,502
JBrowse link
G Smpd1 sphingomyelin phosphodiesterase 1 IMP
IBA
ISO
PMID:21873635
(PMID:18815062), (PMID:19279011)
RGD PMID:18815062, PMID:19279011, PMID:17261082, PMID:21873635 RGD:1601344, RGD:13792537 NCBI chr 1:170,383,682...170,387,525
Ensembl chr 1:170,383,682...170,387,524
JBrowse link
G Smpd2 sphingomyelin phosphodiesterase 2 IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:12473648, PMID:21873635 RGD:1581395, RGD:13792537 NCBI chr20:46,212,070...46,215,183
Ensembl chr20:46,211,892...46,215,120
JBrowse link
G Smpd4 sphingomyelin phosphodiesterase 4 IBA
ISO
PMID:21873635
(MGI:MGI:6450503|PMID:25180167)
(PMID:16517606), (PMID:25180167)
RGD PMID:16517606, PMID:25180167, PMID:21873635 MGI:MGI:6450503, RGD:13792537 NCBI chr11:87,522,971...87,546,687
Ensembl chr11:87,522,971...87,546,687
JBrowse link
G Smpd5 sphingomyelin phosphodiesterase 5 ISO (MGI:MGI:6450238|PMID:21183079) RGD PMID:21183079 MGI:MGI:6450238 NCBI chr 7:117,351,694...117,354,241
Ensembl chr 7:117,351,648...117,354,084
JBrowse link
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 ISO
IBA
MGI:MGI:3815115 (MGI:MGI:3814228|PMID:16216550)
PMID:21873635
(PMID:25691431)
RGD PMID:16216550, PMID:25691431, PMID:21873635 MGI:MGI:3814228, RGD:13792537 NCBI chr17:11,856,525...11,895,566
Ensembl chr17:11,856,525...11,895,566
JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 ISO
IBA
MGI:MGI:3815117 (MGI:MGI:3814228|PMID:16216550)
PMID:21873635
(PMID:25691431)
RGD PMID:16216550, PMID:25691431, PMID:21873635 MGI:MGI:3814228, RGD:13792537 NCBI chr 6:111,334,408...111,417,960
Ensembl chr 6:111,339,136...111,417,954
JBrowse link
G Sptlc3 serine palmitoyltransferase, long chain base subunit 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:132,560,437...132,689,313
Ensembl chr 3:132,560,506...132,692,737
JBrowse link
G Sptssa serine palmitoyltransferase, small subunit A ISO
IBA
(PMID:25691431)
PMID:21873635
RGD PMID:25691431, PMID:21873635 RGD:13792537 NCBI chr 6:75,540,132...75,551,545
Ensembl chr 6:75,540,174...75,551,625
JBrowse link
G Sptssb serine palmitoyltransferase, small subunit B ISO
IBA
MGI:MGI:5689843 (MGI:MGI:5689923|PMID:26438849)
PMID:21873635
RGD PMID:26438849, PMID:21873635 MGI:MGI:5689923, RGD:13792537 NCBI chr 2:166,654,036...166,682,325
Ensembl chr 2:166,654,043...166,682,325
JBrowse link
G Tlcd3b TLC domain containing 3B ISO (MGI:MGI:5490837|PMID:23275342) RGD PMID:23275342 MGI:MGI:5490837 NCBI chr 1:198,252,208...198,265,840
Ensembl chr 1:198,259,496...198,265,839
JBrowse link
ceramide phosphoethanolamine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Samd8 sterile alpha motif domain containing 8 ISO (MGI:MGI:5707904|PMID:25667419) RGD PMID:25667419 MGI:MGI:5707904 NCBI chr15:2,685,504...2,731,062
Ensembl chr15:2,685,511...2,731,462
JBrowse link
G Sgms2 sphingomyelin synthase 2 ISO
IEA
(MGI:MGI:5707904|PMID:25667419)
GO_REF:0000107
RGD
Ensembl
PMID:25667419 GO_REF:0000107, MGI:MGI:5707904 NCBI chr 2:236,458,276...236,530,667
Ensembl chr 2:236,458,279...236,480,502
JBrowse link
galactosylceramide biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B3galt1 Beta-1,3-galactosyltransferase 1 ISO (PMID:9582303) RGD PMID:9582303 NCBI chr 3:53,699,409...54,269,612
Ensembl chr 3:54,253,949...54,267,292
JBrowse link
G B3galt2 Beta-1,3-galactosyltransferase 2 ISO (PMID:9582303) RGD PMID:9582303 NCBI chr13:60,435,946...60,444,957
Ensembl chr13:60,435,946...60,444,957
JBrowse link
G B4galt3 beta-1,4-galactosyltransferase 3 ISO (PMID:9405390) RGD PMID:9405390 NCBI chr13:89,643,847...89,649,880
Ensembl chr13:89,643,881...89,649,906
JBrowse link
G Fa2h fatty acid 2-hydroxylase ISS
IEA
IMP
ISO
GO_REF:0000024
GO_REF:0000041
PMID:17901466
(MGI:MGI:3696647|PMID:15658937), (MGI:MGI:3826747|PMID:18815260)
UniProt
RGD
PMID:15658937, PMID:18815260, PMID:17901466 GO_REF:0000024, GO_REF:0000041, MGI:MGI:3696647, MGI:MGI:3826747, RGD:13825191 NCBI chr19:43,545,380...43,596,788
Ensembl chr19:43,545,378...43,596,801
JBrowse link
G Gal3st1 galactose-3-O-sulfotransferase 1 ISO
IBA
(MGI:MGI:1355015|PMID:10727929)
PMID:21873635
RGD PMID:10727929, PMID:21873635 MGI:MGI:1355015, RGD:13792537 NCBI chr14:84,231,473...84,247,371
Ensembl chr14:84,231,639...84,247,369
JBrowse link
G Ugt8 UDP glycosyltransferase 8 IEA
IDA
GO_REF:0000041
PMID:8713090
UniProt PMID:8713090 GO_REF:0000041, RGD:39458006 NCBI chr 2:229,644,373...229,718,678
Ensembl chr 2:229,644,382...229,718,659
JBrowse link
ganglioside biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07013843.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:259,149,018...259,150,479 JBrowse link
G B3galt4 Beta-1,3-galactosyltransferase 4 IEA
ISO
GO_REF:0000107
(PMID:9582303)
Ensembl
RGD
PMID:9582303 GO_REF:0000107 NCBI chr20:5,446,104...5,447,679
Ensembl chr20:5,446,104...5,447,673
JBrowse link
G B4galnt1 beta-1,4-N-acetyl-galactosaminyl transferase 1 ISS
IBA
ISO
IDA
GO_REF:0000024
PMID:21873635
(PMID:1601877), (PMID:7487055), (PMID:7890749)
PMID:3140234
MGI:MGI:2158349|MGI:MGI:96074 (MGI:MGI:1331265|PMID:10021458), (MGI:MGI:83232|PMID:8855236)
UniProt
RGD
PMID:1601877, PMID:7487055, PMID:7890749, PMID:8855236, PMID:10021458, PMID:21873635, PMID:3140234 GO_REF:0000024, MGI:MGI:1331265, MGI:MGI:83232, RGD:13792537, RGD:21201261 NCBI chr 7:70,439,273...70,459,556
Ensembl chr 7:70,452,579...70,459,880
JBrowse link
G St6galnac3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:259,379,653...259,918,813
Ensembl chr 2:259,379,509...259,898,525
JBrowse link
G St6galnac4 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:11,607,103...11,619,595
Ensembl chr 3:11,607,225...11,619,593
JBrowse link
G St6galnac5 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:258,025,177...259,150,709
Ensembl chr 2:258,025,177...258,052,835
JBrowse link
G St6galnac6 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 ISO
IBA
(MGI:MGI:1354410|PMID:10702226)
PMID:21873635
RGD PMID:10702226, PMID:21873635 MGI:MGI:1354410, RGD:13792537 NCBI chr 3:11,620,050...11,641,460
Ensembl chr 3:11,629,556...11,641,466
JBrowse link
G St8sia2 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 ISO (PMID:10766765) RGD PMID:10766765 NCBI chr 1:135,336,374...135,406,699
Ensembl chr 1:135,336,374...135,406,700
JBrowse link
G St8sia3 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 ISO (PMID:10766765) RGD PMID:10766765 NCBI chr18:59,748,766...59,755,257
Ensembl chr18:59,748,444...59,755,226
JBrowse link
G St8sia4 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 ISO (PMID:10766765) RGD PMID:10766765 NCBI chr 9:103,117,705...103,207,154
Ensembl chr 9:103,117,506...103,207,190
JBrowse link
G St8sia6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 ISO (MGI:MGI:2182536|PMID:11980897) RGD PMID:11980897 MGI:MGI:2182536 NCBI chr17:80,960,785...81,002,830
Ensembl chr17:80,960,785...81,002,838
JBrowse link
ganglioside biosynthetic process via lactosylceramide term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4galt5 beta-1,4-galactosyltransferase 5 ISO (MGI:MGI:6196231|PMID:30114188) RGD PMID:30114188 MGI:MGI:6196231 NCBI chr 3:164,039,731...164,055,561
Ensembl chr 3:164,039,731...164,095,878
JBrowse link
G B4galt6 beta-1,4-galactosyltransferase 6 ISS
ISO
IEA
GO_REF:0000024
(MGI:MGI:6196231|PMID:30114188)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:30114188 GO_REF:0000024, GO_REF:0000107, MGI:MGI:6196231 NCBI chr18:15,462,913...15,525,584
Ensembl chr18:15,462,913...15,525,579
JBrowse link
G St3gal1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 ISO (PMID:8027041)
(MGI:MGI:65558|PMID:8144500)
RGD PMID:8027041, PMID:8144500 MGI:MGI:65558 NCBI chr 7:107,895,045...107,963,158
Ensembl chr 7:107,895,045...107,963,142
JBrowse link
G St3gal2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 ISO
IDA
(PMID:8920913)
(MGI:MGI:65558|PMID:8144500), (PMID:22735313)
RGD PMID:8144500, PMID:8920913, PMID:22735313, PMID:8144500 MGI:MGI:65558, RGD:68307 NCBI chr19:43,273,251...43,324,265
Ensembl chr19:43,274,493...43,290,363
JBrowse link
G St3gal3 ST3 beta-galactoside alpha-2,3-sialyltransferase 3 ISO (PMID:22735313) RGD PMID:22735313 NCBI chr 5:136,765,309...136,965,642
Ensembl chr 5:136,766,208...136,965,191
JBrowse link
globoside biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A4galt alpha 1,4-galactosyltransferase (P blood group) ISO MGI:MGI:3624807|MGI:MGI:5445373 (MGI:MGI:3623723|PMID:16476743), (MGI:MGI:5445364|PMID:22875802) RGD PMID:16476743, PMID:22875802 MGI:MGI:3623723, MGI:MGI:5445364 NCBI chr 7:124,085,832...124,110,440
Ensembl chr 7:124,085,834...124,089,385
JBrowse link
globoside biosynthetic process via lactosylceramide term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G St3gal2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 ISO
ISS
(PMID:12716912)
GO_REF:0000024
RGD
UniProt
PMID:12716912 GO_REF:0000024 NCBI chr19:43,273,251...43,324,265
Ensembl chr19:43,274,493...43,290,363
JBrowse link
glucosylceramide biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fa2h fatty acid 2-hydroxylase ISS
ISO
GO_REF:0000024
(MGI:MGI:5285470|PMID:21628453)
UniProt
RGD
PMID:21628453 GO_REF:0000024, MGI:MGI:5285470 NCBI chr19:43,545,380...43,596,788
Ensembl chr19:43,545,378...43,596,801
JBrowse link
G Ugcg UDP-glucose ceramide glucosyltransferase ISO
IBA
ISS
(PMID:8643456)
PMID:21873635
(MGI:MGI:2180222|PMID:10430909), (MGI:MGI:3603060|PMID:16109770), (MGI:MGI:5448789|PMID:22851168), (MGI:MGI:5510915|PMID:23748427)
GO_REF:0000024
RGD
UniProt
PMID:8643456, PMID:10430909, PMID:16109770, PMID:22851168, PMID:23748427, PMID:21873635 GO_REF:0000024, MGI:MGI:2180222, MGI:MGI:3603060, MGI:MGI:5448789, MGI:MGI:5510915, RGD:13792537 NCBI chr 5:76,376,722...76,419,564
Ensembl chr 5:76,386,836...76,419,560
JBrowse link
glycosphingolipid biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A3galt2 alpha 1,3-galactosyltransferase 2 IDA
ISO
MGI:MGI:1347344|MGI:MGI:3512453 (MGI:MGI:5445364|PMID:22875802)
PMID:12626403
RGD PMID:22875802, PMID:10854427, PMID:12626403 MGI:MGI:5445364, RGD:1299594, RGD:632674 NCBI chr 5:146,933,592...146,945,882
Ensembl chr 5:146,933,592...146,945,880
JBrowse link
G A4galt alpha 1,4-galactosyltransferase (P blood group) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:124,085,832...124,110,440
Ensembl chr 7:124,085,834...124,089,385
JBrowse link
G B4galnt1 beta-1,4-N-acetyl-galactosaminyl transferase 1 IDA PMID:1606358 UniProt PMID:1606358 RGD:21201272 NCBI chr 7:70,439,273...70,459,556
Ensembl chr 7:70,452,579...70,459,880
JBrowse link
G B4galt6 beta-1,4-galactosyltransferase 6 IDA RGD PMID:9593693 RGD:70807 NCBI chr18:15,462,913...15,525,584
Ensembl chr18:15,462,913...15,525,579
JBrowse link
G St6galnac5 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 ISO (MGI:MGI:1346847|PMID:10521438) RGD PMID:10521438 MGI:MGI:1346847 NCBI chr 2:258,025,177...259,150,709
Ensembl chr 2:258,025,177...258,052,835
JBrowse link
G St8sia5 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 IDA PMID:1606358 UniProt PMID:1606358 RGD:21201272 NCBI chr18:73,564,010...73,630,256
Ensembl chr18:73,564,247...73,625,137
JBrowse link
G Ugt8 UDP glycosyltransferase 8 TAS RGD PMID:7521399 RGD:70050 NCBI chr 2:229,644,373...229,718,678
Ensembl chr 2:229,644,382...229,718,659
JBrowse link
lactosylceramide biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4galt6 beta-1,4-galactosyltransferase 6 IEA
ISO
GO_REF:0000107
(PMID:10320813)
Ensembl
RGD
PMID:10320813 GO_REF:0000107 NCBI chr18:15,462,913...15,525,584
Ensembl chr18:15,462,913...15,525,579
JBrowse link
negative regulation of ceramide biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ormdl1 ORMDL sphingolipid biosynthesis regulator 1 ISO
IBA
(PMID:25691431)
PMID:21873635
RGD PMID:25691431, PMID:21873635 RGD:13792537 NCBI chr 9:53,110,628...53,120,454
Ensembl chr 9:53,111,371...53,118,613
JBrowse link
G Ormdl2 ORMDL sphingolipid biosynthesis regulator 2 ISO
IBA
(PMID:25691431)
PMID:21873635
RGD PMID:25691431, PMID:21873635 RGD:13792537 NCBI chr 7:3,242,991...3,246,085
Ensembl chr 7:3,242,991...3,246,071
JBrowse link
G Ormdl3 ORMDL sphingolipid biosynthesis regulator 3 ISO
IBA
IEA
(MGI:MGI:5638294|PMID:25691431)
PMID:21873635
GO_REF:0000107
(PMID:25691431)
RGD
Ensembl
PMID:25691431, PMID:21873635 GO_REF:0000107, MGI:MGI:5638294, RGD:13792537 NCBI chr10:86,545,910...86,554,478
Ensembl chr10:86,547,339...86,554,478
JBrowse link
G Sphk1 sphingosine kinase 1 ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:MGI:6294167|PMID:16118219)
(PMID:16118219)
UniProt
Ensembl
RGD
PMID:16118219 GO_REF:0000024, GO_REF:0000107, MGI:MGI:6294167 NCBI chr10:105,498,728...105,504,401
Ensembl chr10:105,498,728...105,504,393
JBrowse link
negative regulation of sphingolipid biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca2 ATP binding cassette subfamily A member 2 ISO
IMP
IEA
(PMID:24201375)
GO_REF:0000107
RGD
Ensembl
PMID:24201375, PMID:24201375 GO_REF:0000107, RGD:14697729 NCBI chr 3:2,648,787...2,668,770
Ensembl chr 3:2,648,885...2,668,809
JBrowse link
G Atg7 autophagy related 7 ISO MGI:MGI:2176073|MGI:MGI:3587769 (MGI:MGI:5613260|PMID:25332431) RGD PMID:25332431 MGI:MGI:5613260 NCBI chr 4:146,570,113...146,777,093
Ensembl chr 4:146,598,413...146,777,124
JBrowse link
phytosphingosine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acer3 alkaline ceramidase 3 ISO
IBA
(PMID:11356846), (PMID:20068046)
PMID:21873635
RGD PMID:11356846, PMID:20068046, PMID:21873635 RGD:13792537 NCBI chr 1:163,160,987...163,263,621
Ensembl chr 1:163,160,979...163,263,606
JBrowse link
positive regulation of ceramide biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccn1 cellular communication network factor 1 ISO
IEA
(MGI:MGI:3849354|PMID:19364818)
GO_REF:0000107
RGD
Ensembl
PMID:19364818 GO_REF:0000107, MGI:MGI:3849354 NCBI chr 2:251,529,354...251,532,312
Ensembl chr 2:251,529,354...251,532,312
JBrowse link
G Enpp7 ectonucleotide pyrophosphatase/phosphodiesterase 7 ISS
ISO
GO_REF:0000024
(MGI:MGI:4947032|PMID:21177474)
UniProt
RGD
PMID:21177474 GO_REF:0000024, MGI:MGI:4947032 NCBI chr10:108,095,131...108,099,483
Ensembl chr10:108,095,131...108,099,483
JBrowse link
G Pla2g6 phospholipase A2 group VI IDA RGD PMID:18936091 RGD:6482750 NCBI chr 7:120,519,479...120,559,716
Ensembl chr 7:120,519,467...120,559,347
JBrowse link
G Prkcd protein kinase C, delta ISO
IEA
(PMID:19279011)
GO_REF:0000107
RGD
Ensembl
PMID:19279011 GO_REF:0000107 NCBI chr16:6,655,131...6,675,746
Ensembl chr16:6,655,120...6,675,746
JBrowse link
G Sirt3 sirtuin 3 ISO (MGI:MGI:5755322|PMID:26620563) RGD PMID:26620563 MGI:MGI:5755322 NCBI chr 1:213,613,502...213,636,061
Ensembl chr 1:213,613,513...213,635,546
JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 IMP RGD PMID:20096352 RGD:10041064 NCBI chr19:38,237,963...38,321,572
Ensembl chr19:38,237,965...38,321,528
JBrowse link
G Sphk2 sphingosine kinase 2 ISO (PMID:16118219)
(MGI:MGI:6294167|PMID:16118219)
RGD PMID:16118219 MGI:MGI:6294167 NCBI chr 1:101,692,972...101,700,604
Ensembl chr 1:101,692,973...101,697,277
JBrowse link
regulation of ceramide biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ormdl1 ORMDL sphingolipid biosynthesis regulator 1 ISO MGI:MGI:1913862 (MGI:MGI:6393026|PMID:31880535) RGD PMID:31880535 MGI:MGI:6393026 NCBI chr 9:53,110,628...53,120,454
Ensembl chr 9:53,111,371...53,118,613
JBrowse link
G Ormdl3 ORMDL sphingolipid biosynthesis regulator 3 ISO MGI:MGI:2137691|MGI:MGI:2181669|MGI:MGI:6382064 (MGI:MGI:6393026|PMID:31880535) RGD PMID:31880535 MGI:MGI:6393026 NCBI chr10:86,545,910...86,554,478
Ensembl chr10:86,547,339...86,554,478
JBrowse link
G Samd8 sterile alpha motif domain containing 8 ISO (PMID:19506037) RGD PMID:19506037 NCBI chr15:2,685,504...2,731,062
Ensembl chr15:2,685,511...2,731,462
JBrowse link
regulation of sphingolipid biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ormdl1 ORMDL sphingolipid biosynthesis regulator 1 ISO MGI:MGI:1913862 (MGI:MGI:6393026|PMID:31880535) RGD PMID:31880535 MGI:MGI:6393026 NCBI chr 9:53,110,628...53,120,454
Ensembl chr 9:53,111,371...53,118,613
JBrowse link
G Ormdl3 ORMDL sphingolipid biosynthesis regulator 3 ISO MGI:MGI:2137691|MGI:MGI:2181669|MGI:MGI:2445707|MGI:MGI:6343506|MGI:MGI:6382064 (MGI:MGI:5926671|PMID:28275141), (MGI:MGI:6393026|PMID:31880535) RGD PMID:28275141, PMID:31880535 MGI:MGI:5926671, MGI:MGI:6393026 NCBI chr10:86,545,910...86,554,478
Ensembl chr10:86,547,339...86,554,478
JBrowse link
sphinganine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 ISO MGI:MGI:3815115 (MGI:MGI:3846467|PMID:19416652) RGD PMID:19416652 MGI:MGI:3846467 NCBI chr17:11,856,525...11,895,566
Ensembl chr17:11,856,525...11,895,566
JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 ISO (MGI:MGI:1098386|PMID:9363775) RGD PMID:9363775 MGI:MGI:1098386 NCBI chr 6:111,334,408...111,417,960
Ensembl chr 6:111,339,136...111,417,954
JBrowse link
sphinganine-1-phosphate biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sphk2 sphingosine kinase 2 ISO
IBA
(PMID:10751414), (PMID:19729656)
PMID:21873635
(MGI:MGI:1860308|PMID:10751414)
RGD PMID:10751414, PMID:19729656, PMID:21873635 MGI:MGI:1860308, RGD:13792537 NCBI chr 1:101,692,972...101,700,604
Ensembl chr 1:101,692,973...101,697,277
JBrowse link
sphingoid biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sptlc3 serine palmitoyltransferase, long chain base subunit 3 ISO (PMID:19648650) RGD PMID:19648650 NCBI chr 3:132,560,437...132,689,313
Ensembl chr 3:132,560,506...132,692,737
JBrowse link
sphingomyelin biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ormdl1 ORMDL sphingolipid biosynthesis regulator 1 ISO MGI:MGI:1913862 (MGI:MGI:6393026|PMID:31880535) RGD PMID:31880535 MGI:MGI:6393026 NCBI chr 9:53,110,628...53,120,454
Ensembl chr 9:53,111,371...53,118,613
JBrowse link
G Ormdl3 ORMDL sphingolipid biosynthesis regulator 3 ISO MGI:MGI:2137691|MGI:MGI:2181669|MGI:MGI:6382064 (MGI:MGI:6393026|PMID:31880535) RGD PMID:31880535 MGI:MGI:6393026 NCBI chr10:86,545,910...86,554,478
Ensembl chr10:86,547,339...86,554,478
JBrowse link
G Pemt phosphatidylethanolamine N-methyltransferase ISO (MGI:MGI:5707904|PMID:25667419) RGD PMID:25667419 MGI:MGI:5707904 NCBI chr10:46,339,821...46,404,640
Ensembl chr10:46,339,821...46,404,642
JBrowse link
G Sgms1 sphingomyelin synthase 1 ISS
ISO
IBA
GO_REF:0000024
(MGI:MGI:6221394|PMID:27892528)
(PMID:14685263), (PMID:14976195), (PMID:17982138)
PMID:21873635
HGNC
RGD
PMID:14685263, PMID:14976195, PMID:17982138, PMID:27892528, PMID:21873635 GO_REF:0000024, MGI:MGI:6221394, RGD:13792537 NCBI chr 1:250,692,448...250,951,685
Ensembl chr 1:250,691,370...250,951,697
JBrowse link
G Sgms2 sphingomyelin synthase 2 IEA
ISO
IBA
GO_REF:0000107
(MGI:MGI:5707904|PMID:25667419), (MGI:MGI:6221394|PMID:27892528)
(PMID:14685263), (PMID:17982138)
PMID:21873635
Ensembl
RGD
PMID:14685263, PMID:17982138, PMID:25667419, PMID:27892528, PMID:21873635 GO_REF:0000107, MGI:MGI:5707904, MGI:MGI:6221394, RGD:13792537 NCBI chr 2:236,458,276...236,530,667
Ensembl chr 2:236,458,279...236,480,502
JBrowse link
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 ISO MGI:MGI:3815115 (MGI:MGI:3814228|PMID:16216550), (MGI:MGI:5749304|PMID:26301690) RGD PMID:16216550, PMID:26301690 MGI:MGI:3814228, MGI:MGI:5749304 NCBI chr17:11,856,525...11,895,566
Ensembl chr17:11,856,525...11,895,566
JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 ISO MGI:MGI:3815117 (MGI:MGI:3814228|PMID:16216550) RGD PMID:16216550 MGI:MGI:3814228 NCBI chr 6:111,334,408...111,417,960
Ensembl chr 6:111,339,136...111,417,954
JBrowse link
sphingosine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca2 ATP binding cassette subfamily A member 2 ISO
IEA
(PMID:26510981)
GO_REF:0000107
RGD
Ensembl
PMID:26510981 GO_REF:0000107 NCBI chr 3:2,648,787...2,668,770
Ensembl chr 3:2,648,885...2,668,809
JBrowse link
G Acer1 alkaline ceramidase 1 ISO (PMID:17713573), (PMID:20207939), (PMID:20628055)
(MGI:MGI:5800647|PMID:27126290), (MGI:MGI:6107252|PMID:29056331)
RGD PMID:17713573, PMID:20207939, PMID:20628055, PMID:27126290, PMID:29056331 MGI:MGI:5800647, MGI:MGI:6107252 NCBI chr 9:10,061,978...10,093,588
Ensembl chr 9:10,061,978...10,093,588
JBrowse link
G Acer2 alkaline ceramidase 2 ISO (PMID:16940153), (PMID:20089856), (PMID:20207939), (PMID:20628055)
(MGI:MGI:6116621|PMID:29401619)
RGD PMID:16940153, PMID:20089856, PMID:20207939, PMID:20628055, PMID:29401619 MGI:MGI:6116621 NCBI chr 5:105,230,540...105,279,732
Ensembl chr 5:105,230,580...105,279,731
JBrowse link
G Acer3 alkaline ceramidase 3 ISO (PMID:20068046), (PMID:20207939), (PMID:26792856)
(MGI:MGI:5749603|PMID:26474409)
RGD PMID:20068046, PMID:20207939, PMID:26474409, PMID:26792856 MGI:MGI:5749603 NCBI chr 1:163,160,987...163,263,621
Ensembl chr 1:163,160,979...163,263,606
JBrowse link
G Agk acylglycerol kinase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:68,483,345...68,561,518
Ensembl chr 4:68,483,320...68,560,801
JBrowse link
G Asah1 N-acylsphingosine amidohydrolase 1 IEA
ISO
ISS
GO_REF:0000107
(PMID:10610716), (PMID:12815059)
GO_REF:0000024
(MGI:MGI:1267186|PMID:9653654)
Ensembl
RGD
UniProt
PMID:9653654, PMID:10610716, PMID:12815059 GO_REF:0000024, GO_REF:0000107, MGI:MGI:1267186 NCBI chr16:53,998,604...54,030,006
Ensembl chr16:53,998,560...54,040,836
JBrowse link
G Asah2 N-acylsphingosine amidohydrolase 2 IDA
IBA
ISO
PMID:10488143
PMID:21873635
(MGI:MGI:3608219|PMID:16126722), (MGI:MGI:3640407|PMID:16380386), (MGI:MGI:6275120|PMID:10652340)
(PMID:30154232)
PMID:15217782
PMID:15123644
RGD PMID:10652340, PMID:16126722, PMID:16380386, PMID:30154232, PMID:10488143, PMID:21873635, PMID:15217782, PMID:15123644 MGI:MGI:3608219, MGI:MGI:3640407, MGI:MGI:6275120, RGD:13838800, RGD:13792537, RGD:13838794, RGD:13838793 NCBI chr 1:250,557,042...250,665,083
Ensembl chr 1:250,557,044...250,630,677
JBrowse link
G Gba glucosylceramidase beta ISO (PMID:19279011) RGD PMID:19279011 NCBI chr 2:188,511,781...188,522,602
Ensembl chr 2:188,516,582...188,522,601
JBrowse link
G Sphk1 sphingosine kinase 1 ISO
IBA
IEA
UniProtKB:Q9NRA0 (PMID:23106337)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:23106337, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr10:105,498,728...105,504,401
Ensembl chr10:105,498,728...105,504,393
JBrowse link
G Sphk2 sphingosine kinase 2 ISO
IBA
UniProtKB:Q9NYA1 (PMID:23106337)
PMID:21873635
RGD PMID:23106337, PMID:21873635 RGD:13792537 NCBI chr 1:101,692,972...101,700,604
Ensembl chr 1:101,692,973...101,697,277
JBrowse link
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 ISO
IBA
MGI:MGI:3815115 (MGI:MGI:3814228|PMID:16216550)
PMID:21873635
RGD PMID:16216550, PMID:21873635 MGI:MGI:3814228, RGD:13792537 NCBI chr17:11,856,525...11,895,566
Ensembl chr17:11,856,525...11,895,566
JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 ISO
IBA
MGI:MGI:3815117 (MGI:MGI:3814228|PMID:16216550)
PMID:21873635
RGD PMID:16216550, PMID:21873635 MGI:MGI:3814228, RGD:13792537 NCBI chr 6:111,334,408...111,417,960
Ensembl chr 6:111,339,136...111,417,954
JBrowse link
G Sptlc3 serine palmitoyltransferase, long chain base subunit 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:132,560,437...132,689,313
Ensembl chr 3:132,560,506...132,692,737
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    metabolic process 12278
      cellular metabolic process 11085
        cellular biosynthetic process 6060
          membrane lipid biosynthetic process 129
            sphingolipid biosynthetic process 89
              ceramide biosynthetic process + 67
              ceramide phosphoethanolamine biosynthetic process 2
              glycosphingolipid biosynthetic process + 26
              negative regulation of sphingolipid biosynthetic process + 6
              positive regulation of sphingolipid biosynthetic process + 7
              regulation of sphingolipid biosynthetic process + 14
              sphinganine-1-phosphate biosynthetic process 1
              sphingoid biosynthetic process + 13
              sphingolipid biosynthesis involved in endoplasmic reticulum membrane organization 0
              sphingomyelin biosynthetic process 7
Path 2
Term Annotations click to browse term
  biological_process 20027
    metabolic process 12278
      primary metabolic process 10941
        lipid metabolic process 1374
          cellular lipid metabolic process 1023
            membrane lipid metabolic process 191
              membrane lipid biosynthetic process 129
                sphingolipid biosynthetic process 89
                  ceramide biosynthetic process + 67
                  ceramide phosphoethanolamine biosynthetic process 2
                  glycosphingolipid biosynthetic process + 26
                  negative regulation of sphingolipid biosynthetic process + 6
                  positive regulation of sphingolipid biosynthetic process + 7
                  regulation of sphingolipid biosynthetic process + 14
                  sphinganine-1-phosphate biosynthetic process 1
                  sphingoid biosynthetic process + 13
                  sphingolipid biosynthesis involved in endoplasmic reticulum membrane organization 0
                  sphingomyelin biosynthetic process 7
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.