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ONTOLOGY REPORT - ANNOTATIONS


Term:COPII-coated ER to Golgi transport vesicle
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Accession:GO:0030134 term browser browse the term
Definition:A vesicle with a coat formed of the COPII coat complex proteins. The COPII coat complex is formed by the Sec23p/Sec24p and the Sec13p/Sec31p heterodimers. COPII-associated vesicles transport proteins from the rough endoplasmic reticulum to the Golgi apparatus (anterograde transport).
Synonyms:exact_synonym: COPII-associated ER to Golgi transport vesicle;   COPII-associated vesicle;   COPII-coated vesicle
 related_synonym: COPII vesicle;   ER to Golgi constitutive secretory pathway transport vesicle;   ER to Golgi transport vesicle;   ER-Golgi transport vesicle;   endoplasmic reticulum to Golgi transport vesicle;   endoplasmic reticulum-Golgi transport vesicle
 alt_id: GO:0030138;   GO:0140045


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COPII-coated ER to Golgi transport vesicle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G App amyloid beta precursor protein JBrowse link 11 24,425,013 24,641,872 RGD:1624291
G Ddhd2 DDHD domain containing 2 JBrowse link 16 71,090,096 71,120,713 RGD:13792537
G Ecpas Ecm29 proteasome adaptor and scaffold JBrowse link 5 75,928,510 76,040,771 RGD:1624291
G Ergic1 endoplasmic reticulum-golgi intermediate compartment 1 JBrowse link 10 16,821,393 16,912,050 RGD:13792537
G Ergic2 ERGIC and golgi 2 JBrowse link 4 182,569,086 182,600,258 RGD:13792537
G Ergic3 ERGIC and golgi 3 JBrowse link 3 151,553,567 151,563,318 RGD:13792537
G Golga2 golgin A2 JBrowse link 3 11,317,328 11,337,569 RGD:1624291
G Hdhd2 haloacid dehalogenase-like hydrolase domain containing 2 JBrowse link 18 73,226,630 73,278,062 RGD:13792537
G Klhl12 kelch-like family member 12 JBrowse link 13 51,280,933 51,314,753 RGD:1624291
RGD:13792537
RGD:1600115
G Lman1 lectin, mannose-binding, 1 JBrowse link 18 61,683,377 61,707,344 RGD:1624291
RGD:1600115
RGD:13792537
G Lman1l lectin, mannose-binding, 1 like JBrowse link 8 62,386,806 62,400,370 RGD:13792537
G Lman2 lectin, mannose-binding 2 JBrowse link 17 9,798,136 9,815,820 RGD:13792537
G Lman2l lectin, mannose-binding 2-like JBrowse link 9 43,020,940 43,023,015 RGD:13792537
G Pcsk9 proprotein convertase subtilisin/kexin type 9 JBrowse link 5 126,031,368 126,053,726 RGD:1624291
G Pitpnm3 PITPNM family member 3 JBrowse link 10 58,618,679 58,722,679 RGD:13792537
G Sec23a Sec23 homolog A, COPII coat complex component JBrowse link 6 80,059,742 80,107,340 RGD:1624291
G Sec23ip SEC23 interacting protein JBrowse link 1 200,167,075 200,210,362 RGD:13792537
G Sec24b SEC24 homolog B, COPII coat complex component JBrowse link 2 230,286,886 230,356,887 RGD:8553730
G Sec31a SEC31 homolog A, COPII coat complex component JBrowse link 14 10,854,713 10,909,579 RGD:1624291
RGD:1600115
G Stx17 syntaxin 17 JBrowse link 5 63,866,346 63,926,276 RGD:8553719
G Tex261 testis expressed 261 JBrowse link 4 115,446,830 115,454,035 RGD:13792537
G Ticam2 toll-like receptor adaptor molecule 2 JBrowse link 18 40,555,106 40,572,569 RGD:13792537
G Tmed1 transmembrane p24 trafficking protein 1 JBrowse link 8 22,540,422 22,544,369 RGD:13792537
G Tmed10 transmembrane p24 trafficking protein 10 JBrowse link 6 109,169,739 109,205,004 RGD:13792537
G Tmed11 transmembrane emp24 protein transport domain containing 11 JBrowse link 14 1,936,972 1,959,089 RGD:13792537
G Tmed2 transmembrane p24 trafficking protein 2 JBrowse link 12 37,471,259 37,480,344 RGD:13792537
G Tmed3 transmembrane p24 trafficking protein 3 JBrowse link 8 97,075,194 97,083,107 RGD:13792537
G Tmed4 transmembrane p24 trafficking protein 4 JBrowse link 14 86,390,327 86,395,151 RGD:13792537
G Tmed5 transmembrane p24 trafficking protein 5 JBrowse link 14 2,613,318 2,624,773 RGD:13792537
G Tmed6 transmembrane p24 trafficking protein 6 JBrowse link 19 39,261,841 39,267,928 RGD:13792537
G Tmed7 transmembrane p24 trafficking protein 7 JBrowse link 18 40,579,182 40,586,260 RGD:13792537
G Tmed9 transmembrane p24 trafficking protein 9 JBrowse link 17 9,560,735 9,565,249 RGD:13792537
G Vangl2 VANGL planar cell polarity protein 2 JBrowse link 13 90,379,203 90,405,627 RGD:1624291
G Yif1a Yip1 interacting factor homolog A, membrane trafficking protein JBrowse link 1 220,470,070 220,474,131 RGD:13792537
G Yif1b Yip1 interacting factor homolog B, membrane trafficking protein JBrowse link 1 88,182,379 88,192,568 RGD:13792537
G Yipf5 Yip1 domain family, member 5 JBrowse link 18 33,401,103 33,436,885 RGD:1624291
G Yipf6 Yip1 domain family, member 6 JBrowse link X 68,625,760 68,637,780 RGD:1624291
COPII vesicle coat term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07041481.1 RGD:13792537
G Klhl12 kelch-like family member 12 JBrowse link 13 51,280,933 51,314,753 RGD:1600115
RGD:1624291
G Pdcd6 programmed cell death 6 JBrowse link 1 31,576,183 31,591,852 RGD:1624291
RGD:1600115
G Pef1 penta-EF hand domain containing 1 JBrowse link 5 148,320,610 148,343,876 RGD:1624291
RGD:1600115
G Sar1a secretion associated, Ras related GTPase 1A JBrowse link 20 31,298,269 31,310,676 RGD:1624291
G Sar1b secretion associated, Ras related GTPase 1B JBrowse link 10 37,215,989 37,245,603 RGD:13792537
G Sec13 SEC13 homolog, nuclear pore and COPII coat complex component JBrowse link 4 145,686,186 145,699,577 RGD:1624291
RGD:13792537
G Sec23a Sec23 homolog A, COPII coat complex component JBrowse link 6 80,059,742 80,107,340 RGD:1624291
RGD:13792537
G Sec23b Sec23 homolog B, COPII coat complex component JBrowse link 3 138,715,118 138,757,111 RGD:13792537
G Sec24a SEC24 homolog A, COPII coat complex component JBrowse link 10 37,138,539 37,215,899 RGD:1624291
RGD:13792537
G Sec24b SEC24 homolog B, COPII coat complex component JBrowse link 2 230,286,886 230,356,887 RGD:1624291
RGD:13792537
G Sec24c SEC24 homolog C, COPII coat complex component JBrowse link 15 4,035,196 4,057,209 RGD:1624291
RGD:13792537
G Sec24d SEC24 homolog D, COPII coat complex component JBrowse link 2 227,455,704 227,562,801 RGD:1624291
RGD:13792537
G Sec31a SEC31 homolog A, COPII coat complex component JBrowse link 14 10,854,713 10,909,579 RGD:1600115
RGD:13792537
RGD:1624291
G Sec31b SEC31 homolog B, COPII coat complex component JBrowse link 1 264,266,279 264,294,687 RGD:13792537
ER to Golgi transport vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gosr2 golgi SNAP receptor complex member 2 JBrowse link 10 91,735,772 91,756,123 RGD:13792537
G LOC100912478 vacuolar ATPase assembly integral membrane protein VMA21-like JBrowse link 17 35,126,955 35,134,495 RGD:1600115
G LOC103689964 vacuolar ATPase assembly integral membrane protein Vma21 JBrowse link 17 34,940,424 34,946,009 RGD:1600115
G LOC103694079 vacuolar ATPase assembly integral membrane protein Vma21-like JBrowse link 17 35,121,571 35,126,402 RGD:1600115
G Scap SREBF chaperone JBrowse link 8 118,551,869 118,628,650 RGD:1600115
G Sec16a SEC16 homolog A, endoplasmic reticulum export factor JBrowse link 3 3,856,218 3,890,785 RGD:13792537
G Sec16b SEC16 homolog B, endoplasmic reticulum export factor JBrowse link 13 75,153,074 75,216,941 RGD:13792537
G Sec22b SEC22 homolog B, vesicle trafficking protein JBrowse link 2 200,076,079 200,096,861 RGD:1624291
RGD:13792537
G Sec23a Sec23 homolog A, COPII coat complex component JBrowse link 6 80,059,742 80,107,340 RGD:1624291
G Srebf1 sterol regulatory element binding transcription factor 1 JBrowse link 10 46,570,996 46,593,021 RGD:1600115
G Srebf2 sterol regulatory element binding transcription factor 2 JBrowse link 7 123,381,082 123,438,605 RGD:1600115
G Stx17 syntaxin 17 JBrowse link 5 63,866,346 63,926,276 RGD:1600115
G Tmed7 transmembrane p24 trafficking protein 7 JBrowse link 18 40,579,182 40,586,260 RGD:1600115
G Uso1 USO1 vesicle transport factor JBrowse link 14 17,371,451 17,436,948 RGD:1600115
RGD:13792537
G Vma21 vacuolar ATPase assembly factor VMA21 JBrowse link 16 70,142,561 70,151,833 RGD:1600115
G Vti1a vesicle transport through interaction with t-SNAREs 1A JBrowse link 1 276,310,072 276,508,635 RGD:13792537
G Vti1b vesicle transport through interaction with t-SNAREs 1B JBrowse link 6 102,340,261 102,353,612 RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20118
    cellular anatomical entity 19774
      cytoplasm 10968
        cytoplasmic vesicle 1860
          coated vesicle 210
            COPII-coated ER to Golgi transport vesicle 62
              ER to Golgi transport vesicle membrane + 31
Path 2
Term Annotations click to browse term
  cellular_component 20118
    cellular anatomical entity 19774
      organelle 12828
        membrane-bounded organelle 11124
          vesicle 2024
            intracellular vesicle 1866
              cytoplasmic vesicle 1860
                coated vesicle 210
                  COPII-coated ER to Golgi transport vesicle 62
                    ER to Golgi transport vesicle membrane + 31
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.