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ONTOLOGY REPORT - ANNOTATIONS

Term:COPII vesicle coat
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Accession:GO:0030127 term browser browse the term
Definition:One of two multimeric complexes that forms a membrane vesicle coat. COPII is best characterized in S. cerevisiae, where the subunits are called Sar1p, Sec13p, Sec31p, Sec23p, and Sec24p. Vesicles with COPII coats are found associated with endoplasmic reticulum (ER) membranes at steady state.


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COPII vesicle coat term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KLHL12 kelch like family member 12 part_of IEA Ensembl GO_REF:0000107 NCBI chr 1:178,490,467...178,527,919
Ensembl chr 1:182,785,420...182,821,965 		JBrowse link
G LOC100990721 GTP-binding protein SAR1a-like part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 4:112,540,529...112,544,435 JBrowse link
G PDCD6 programmed cell death 6 part_of ISO (PMID:27716508) UniProt PMID:27716508
G PEF1 penta-EF-hand domain containing 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 1:30,913,773...30,929,066
Ensembl chr 1:31,930,814...31,946,183 		JBrowse link
G SAR1A secretion associated Ras related GTPase 1A part_of
is_active_in		 IEA
ISO		 (PMID:32358066) Ensembl
UniProt
TreeGrafter		 PMID:32358066 GO_REF:0000107 GO_REF:0000118 NCBI chr10:66,623,355...66,643,354
Ensembl chr10:69,151,980...69,171,909 		JBrowse link
G SAR1B secretion associated Ras related GTPase 1B part_of
is_active_in		 IEA
ISO		 (PMID:32358066) Ensembl
UniProt
TreeGrafter		 PMID:32358066 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:130,008,941...130,035,785
Ensembl chr 5:136,157,408...136,181,967 		JBrowse link
G SEC13 SEC13 homolog, nuclear pore and COPII coat complex component part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:10,237,101...10,257,694
Ensembl chr 3:10,588,644...10,608,754 		JBrowse link
G SEC23A SEC23 homolog A, COPII coat complex component part_of IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr14:19,802,612...19,873,076
Ensembl chr14:38,159,381...38,229,550 		JBrowse link
G SEC23B SEC23 homolog B, COPII coat complex component part_of IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr20:18,469,182...18,523,114
Ensembl chr20:18,440,121...18,493,512 		JBrowse link
G SEC24A SEC24 homolog A, COPII coat complex component part_of IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:130,050,625...130,128,212
Ensembl chr 5:136,197,746...136,273,158 		JBrowse link
G SEC24B SEC24 homolog B, COPII coat complex component part_of IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:101,937,119...102,043,038
Ensembl chr 4:112,534,779...112,628,065 		JBrowse link
G SEC24C SEC24 homolog C, COPII coat complex component part_of IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr10:70,267,194...70,295,116
Ensembl chr10:72,943,116...72,968,027 		JBrowse link
G SEC24D SEC24 homolog D, COPII coat complex component part_of IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:110,916,508...111,033,298
Ensembl chr 4:121,468,914...121,582,156 		JBrowse link
G SEC31A SEC31 homolog A, COPII coat complex component part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:41,312,389...41,384,924
Ensembl chr 4:47,173,348...47,235,812 		JBrowse link
G SEC31B SEC31 homolog B, COPII coat complex component part_of IEA TreeGrafter GO_REF:0000118 NCBI chr10:97,086,792...97,120,604
Ensembl chr10:100,568,891...100,598,141 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 17179
    protein-containing complex 5910
      membrane protein complex 1248
        membrane coat 104
          vesicle coat 58
            COPII vesicle coat 15
Path 2
Term Annotations click to browse term
  cellular_component 17179
    cellular anatomical entity 16965
      intracellular anatomical structure 13616
        intracellular organelle 12064
          intracellular membrane-bounded organelle 10852
            intracellular vesicle 1856
              cytoplasmic vesicle 1846
                transport vesicle 421
                  transport vesicle membrane 218
                    ER to Golgi transport vesicle membrane 31
                      COPII vesicle coat 15
paths to the root