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ONTOLOGY REPORT - ANNOTATIONS


Term:cell-substrate junction
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Accession:GO:0030055 term browser browse the term
Definition:A cell junction that forms a connection between a cell and the extracellular matrix.
Synonyms:exact_synonym: cell-matrix junction


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cell-substrate junction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DMD dystrophin IEA Ensembl GO_REF:0000107 NCBI chr  X:27,028,223...29,650,728
Ensembl chr  X:27,028,223...29,181,689
JBrowse link
G FERMT1 fermitin family member 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:15,080,585...15,137,947
Ensembl chr17:15,080,587...15,137,753
JBrowse link
G FERMT2 fermitin family member 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:182,519,681...182,606,890
Ensembl chr 1:182,519,681...182,606,869
JBrowse link
G FERMT3 fermitin family member 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:7,886,781...7,909,892
Ensembl chr 2:7,886,784...7,915,610
JBrowse link
G NEXN nexilin F-actin binding protein ISO RGD PMID:9832551 RGD:1299387 NCBI chr 6:135,315,000...135,382,911
Ensembl chr 6:135,318,754...135,382,699
JBrowse link
G PGM5 phosphoglucomutase 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:221,634,516...221,837,764
Ensembl chr 1:221,634,524...221,836,483
JBrowse link
G SORBS1 sorbin and SH3 domain containing 1 ISO (MGI:MGI:3694165|PMID:10085297) UniProt PMID:10085297 MGI:MGI:3694165 NCBI chr14:106,895,764...107,137,469
Ensembl chr14:106,895,763...107,137,767
JBrowse link
G TNS1 tensin 1 ISO (MGI:MGI:86584|PMID:9087448) MGI PMID:9087448 MGI:MGI:86584 NCBI chr15:119,948,133...120,143,797
Ensembl chr15:119,949,528...120,177,353
JBrowse link
focal adhesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCB4 ATP binding cassette subfamily B member 4 ISO HPA GO_REF:0000052 NCBI chr 9:93,171,371...93,262,124 JBrowse link
G ACTB actin beta ISS AgBase GO_REF:0000024 NCBI chr 3:4,084,275...4,090,383
Ensembl chr 3:4,082,216...4,090,356
JBrowse link
G ACTG1 actin gamma 1 ISS AgBase GO_REF:0000024 NCBI chr12:1,320,355...1,323,219
Ensembl chr12:1,160,350...1,323,217
JBrowse link
G ACTN1 actinin alpha 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:92,550,132...92,644,842
Ensembl chr 7:92,550,007...92,644,842
JBrowse link
G ACTN2 actinin alpha 2 IEA Ensembl GO_REF:0000107 NCBI chr14:54,670,727...54,742,717
Ensembl chr14:54,666,623...54,742,779
JBrowse link
G ACTN3 actinin alpha 3 ISO (PMID:16807302) UniProtKB PMID:16807302 NCBI chr 2:5,860,386...5,873,779
Ensembl chr 2:5,858,845...5,874,124
JBrowse link
G ADAM17 ADAM metallopeptidase domain 17 colocalizes_with IEA
ISO
(PMID:14970227) Ensembl
BHF-UCL
PMID:14970227 GO_REF:0000107 NCBI chr 3:126,795,513...126,853,995
Ensembl chr 3:126,795,426...126,853,995
JBrowse link
G ADGRB1 adhesion G protein-coupled receptor B1 IEA Ensembl GO_REF:0000107 NCBI chr 4:1,582,321...1,658,639
Ensembl chr 4:1,582,324...1,659,163
JBrowse link
G AFAP1 actin filament associated protein 1 IEA Ensembl GO_REF:0000107 NCBI chr 8:3,070,031...3,198,319
Ensembl chr 8:3,069,954...3,202,536
JBrowse link
G AIF1L allograft inflammatory factor 1 like IEA Ensembl GO_REF:0000107 NCBI chr 1:271,075,376...271,099,984
Ensembl chr 1:271,072,734...271,102,803
JBrowse link
G AJUBA ajuba LIM protein IEA Ensembl GO_REF:0000107 NCBI chr 7:76,063,009...76,072,884
Ensembl chr 7:76,063,034...76,076,594
JBrowse link
G ALKBH6 alkB homolog 6 IEA Ensembl GO_REF:0000107 NCBI chr 6:45,384,955...45,390,247
Ensembl chr 6:45,384,957...45,390,244
JBrowse link
G ALOX15B arachidonate 15-lipoxygenase type B IEA Ensembl GO_REF:0000107 NCBI chr12:53,259,867...53,281,127
Ensembl chr12:53,259,940...53,281,520
JBrowse link
G ANXA6 annexin A6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:71,857,229...71,913,723
Ensembl chr16:71,857,258...71,913,723
JBrowse link
G ARHGAP24 Rho GTPase activating protein 24 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:132,761,967...133,506,065
Ensembl chr 8:132,761,689...133,242,298
JBrowse link
G ARHGAP26 Rho GTPase activating protein 26 IEA UniProt GO_REF:0000044 NCBI chr 2:144,301,234...144,778,090
Ensembl chr 2:144,301,335...144,778,086
JBrowse link
G ARHGEF7 Rho guanine nucleotide exchange factor 7 ISO RGD PMID:17081755 RGD:2303059 NCBI chr11:77,427,352...77,531,001
Ensembl chr11:77,427,368...77,530,995
JBrowse link
G ARL14EP ADP ribosylation factor like GTPase 14 effector protein IEA Ensembl GO_REF:0000107 NCBI chr 2:30,293,400...30,311,583
Ensembl chr 2:30,295,034...30,311,472
JBrowse link
G ARL2 ADP ribosylation factor like GTPase 2 IEA Ensembl GO_REF:0000107 NCBI chr 2:7,157,963...7,167,024
Ensembl chr 2:7,157,963...7,167,329
JBrowse link
G ARMC5 armadillo repeat containing 5 IEA Ensembl GO_REF:0000107 NCBI chr 3:17,100,612...17,108,523
Ensembl chr 3:17,100,624...17,108,365
JBrowse link
G ARPC2 actin related protein 2/3 complex subunit 2 IEA Ensembl GO_REF:0000107 NCBI chr15:120,297,122...120,328,795
Ensembl chr15:120,297,127...120,329,059
JBrowse link
G ASAP3 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 IEA
IBA
(PMID:21873635) Ensembl
InterPro
GO_Central
PMID:21873635 GO_REF:0000002, GO_REF:0000107 NCBI chr 6:81,309,748...81,360,054
Ensembl chr 6:81,309,748...81,360,043
JBrowse link
G ATAT1 alpha tubulin acetyltransferase 1 IEA UniProt GO_REF:0000044 NCBI chr 7:23,173,138...23,185,463
Ensembl chr 7:23,166,304...23,185,458
JBrowse link
G AVIL advillin IEA Ensembl GO_REF:0000107 NCBI chr 5:23,087,946...23,110,602
Ensembl chr 5:23,087,956...23,132,465
JBrowse link
G BCAR1 BCAR1 scaffold protein, Cas family member IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 6:12,369,332...12,404,822
Ensembl chr 6:12,367,758...12,404,822
JBrowse link
G BCAR3 BCAR3 adaptor protein, NSP family member ISO (MGI:MGI:5442237|PMID:22801373) UniProt PMID:22801373 MGI:MGI:5442237 NCBI chr 4:123,440,571...123,666,603
Ensembl chr 4:123,440,571...123,666,598
JBrowse link
G CAPN2 calpain 2 ISO MMO:0000662 RGD PMID:24271063 RGD:13792616 NCBI chr10:19,758,824...19,820,241
Ensembl chr10:19,758,762...19,851,989
JBrowse link
G CASS4 Cas scaffold protein family member 4 IEA
ISS
Ensembl
UniProt
GO_REF:0000024, GO_REF:0000107 NCBI chr17:56,990,774...57,032,306
Ensembl chr17:56,991,161...57,034,470
JBrowse link
G CAV1 caveolin 1 colocalizes_with ISO
IBA
(PMID:21873635) RGD
GO_Central
PMID:15731459, PMID:16618703, PMID:21873635 RGD:1582159, RGD:1582182 NCBI chr18:29,648,120...29,682,451
Ensembl chr18:29,649,992...29,682,465
JBrowse link
G CAV2 caveolin 2 colocalizes_with IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:29,699,012...29,707,277
Ensembl chr18:29,699,020...29,707,277
JBrowse link
G CAV3 caveolin 3 colocalizes_with IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:65,117,868...65,130,886
Ensembl chr13:65,117,776...65,134,066
JBrowse link
G CBL Cbl proto-oncogene ISO RGD PMID:22203672 RGD:11576305 NCBI chr 9:46,416,937...46,512,855
Ensembl chr 9:46,404,999...46,512,834
JBrowse link
G CFL1 cofilin 1 ISO (PMID:29162887) MGI PMID:29162887 NCBI chr 2:6,471,558...6,475,019
Ensembl chr 2:6,469,254...6,475,035
JBrowse link
G CLASP1 cytoplasmic linker associated protein 1 colocalizes_with IEA
ISO
(PMID:24859005) Ensembl
UniProtKB
PMID:24859005 GO_REF:0000107 NCBI chr15:29,782,613...30,042,727
Ensembl chr15:29,782,604...30,042,734
JBrowse link
G CLASP2 cytoplasmic linker associated protein 2 colocalizes_with ISO
IEA
(PMID:24859005) UniProtKB
Ensembl
PMID:24859005 GO_REF:0000107 NCBI chr13:19,305,430...19,510,589
Ensembl chr13:19,305,180...19,510,585
JBrowse link
G CORO1C coronin 1C NOT|colocalizes_with ISO (PMID:19913511) UniProtKB PMID:19913511 NCBI chr14:42,062,468...42,145,130
Ensembl chr14:42,062,893...42,145,125
JBrowse link
G CORO2B coronin 2B IEA Ensembl GO_REF:0000107 NCBI chr 1:166,465,870...166,608,840
Ensembl chr 1:166,465,953...166,608,367
JBrowse link
G CPNE3 copine 3 IEA Ensembl GO_REF:0000107 NCBI chr 4:50,276,330...50,345,400
Ensembl chr 4:50,276,417...50,345,369
JBrowse link
G CTTN cortactin colocalizes_with ISO PMID:18768925 UniProt PMID:18768925 RGD:10047281 NCBI chr 2:3,031,103...3,060,796
Ensembl chr 2:3,031,102...3,060,855
JBrowse link
G CYBA cytochrome b-245 alpha chain ISO RGD PMID:19574552 RGD:11040550 NCBI chr 6:1,015,212...1,021,422
Ensembl chr 6:1,015,154...1,021,418
JBrowse link
G DAG1 dystroglycan 1 colocalizes_with IEA
ISO
(PMID:18341635) Ensembl
UniProtKB
PMID:18341635 GO_REF:0000107 NCBI chr13:32,028,019...32,092,450
Ensembl chr13:32,029,329...32,092,453
JBrowse link
G DCAF6 DDB1 and CUL4 associated factor 6 IEA Ensembl GO_REF:0000107 NCBI chr 4:82,911,576...83,069,718
Ensembl chr 4:82,911,574...83,069,702
JBrowse link
G DCTN4 dynactin subunit 4 colocalizes_with ISO RGD PMID:10607597 RGD:70710 NCBI chr 2:151,681,001...151,713,923
Ensembl chr 2:151,677,260...151,783,746
JBrowse link
G DLC1 DLC1 Rho GTPase activating protein colocalizes_with IBA
IEA
ISO
(PMID:21873635) GO_Central
UniProt
RGD
PMID:15506980, PMID:21873635 GO_REF:0000044, RGD:1624304 NCBI chr17:1,169,709...1,637,171
Ensembl chr17:1,170,195...1,637,162
JBrowse link
G DST dystonin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:28,812,423...29,300,149
Ensembl chr 7:28,812,334...29,300,153
JBrowse link
G EFS embryonal Fyn-associated substrate IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:75,720,033...75,731,615
Ensembl chr 7:75,722,181...75,731,613
JBrowse link
G ENAH ENAH actin regulator IEA Ensembl GO_REF:0000107 NCBI chr10:13,439,772...13,609,347
Ensembl chr10:13,446,426...13,609,303
JBrowse link
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 IEA Ensembl GO_REF:0000107 NCBI chr15:31,159,214...31,295,891
Ensembl chr15:31,159,217...31,295,896
JBrowse link
G EPHA2 EPH receptor A2 IEA Ensembl GO_REF:0000107 NCBI chr 6:75,251,465...75,279,364
Ensembl chr 6:75,251,467...75,279,314
JBrowse link
G EVL Enah/Vasp-like IEA Ensembl GO_REF:0000107 NCBI chr 7:120,911,814...121,056,556
Ensembl chr 7:120,911,220...121,056,558
JBrowse link
G EZR ezrin colocalizes_with IEA
ISO
(PMID:21282464) Ensembl
BHF-UCL
PMID:21282464 GO_REF:0000107 NCBI chr 1:8,403,362...8,452,750
Ensembl chr 1:8,403,453...8,452,750
JBrowse link
G FAM107A family with sequence similarity 107 member A ISO (PMID:20543869) UniProtKB PMID:20543869 NCBI chr13:40,276,896...40,369,708 JBrowse link
G FBLIM1 filamin binding LIM protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:74,929,830...74,964,166
Ensembl chr 6:74,909,720...74,966,965
JBrowse link
G FERMT1 fermitin family member 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:15,080,585...15,137,947
Ensembl chr17:15,080,587...15,137,753
JBrowse link
G FERMT2 fermitin family member 2 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 1:182,519,681...182,606,890
Ensembl chr 1:182,519,681...182,606,869
JBrowse link
G FES FES proto-oncogene, tyrosine kinase IEA Ensembl GO_REF:0000107 NCBI chr 7:53,472,947...53,485,084
Ensembl chr 7:53,472,946...53,485,082
JBrowse link
G FLNB filamin B IEA Ensembl GO_REF:0000107 NCBI chr13:39,789,259...39,938,751
Ensembl chr13:39,789,703...39,938,750
JBrowse link
G FLRT1 fibronectin leucine rich transmembrane protein 1 colocalizes_with ISO (MGI:MGI:3662950|PMID:16872596) UniProtKB PMID:16872596 MGI:MGI:3662950 NCBI chr 2:7,971,782...8,052,572
Ensembl chr 2:7,976,275...8,052,352
JBrowse link
G FLRT2 fibronectin leucine rich transmembrane protein 2 colocalizes_with IEA
ISO
(MGI:MGI:3662950|PMID:16872596) Ensembl
UniProtKB
PMID:16872596 GO_REF:0000107, MGI:MGI:3662950 NCBI chr 7:107,812,354...107,913,006
Ensembl chr 7:107,812,613...107,913,618
JBrowse link
G FLRT3 fibronectin leucine rich transmembrane protein 3 colocalizes_with IEA
ISO
(MGI:MGI:3662950|PMID:16872596) Ensembl
UniProtKB
PMID:16872596 GO_REF:0000107, MGI:MGI:3662950 NCBI chr17:22,940,491...22,955,277
Ensembl chr17:22,940,492...22,954,424
JBrowse link
G FOCAD focadhesin IEA Ensembl GO_REF:0000107 NCBI chr 1:201,938,993...202,258,924
Ensembl chr 1:201,880,712...202,258,815
JBrowse link
G GIT1 GIT ArfGAP 1 IEA Ensembl GO_REF:0000107 NCBI chr12:45,768,172...45,783,652
Ensembl chr12:45,768,174...45,783,747
JBrowse link
G GRB7 growth factor receptor bound protein 7 IEA Ensembl GO_REF:0000107 NCBI chr12:22,574,579...22,583,386
Ensembl chr12:22,574,584...22,584,760
JBrowse link
G GSN gelsolin colocalizes_with IEA
ISO
(MGI:MGI:5619440|PMID:23325791) Ensembl
UniProtKB
PMID:23325791 GO_REF:0000107, MGI:MGI:5619440 NCBI chr 1:261,295,711...261,372,848
Ensembl chr 1:261,295,713...261,385,287
JBrowse link
G HCK HCK proto-oncogene, Src family tyrosine kinase ISO (PMID:11904303) UniProtKB PMID:11904303 NCBI chr17:35,708,549...35,751,590
Ensembl chr17:35,709,348...35,751,588
JBrowse link
G IL1RL1 interleukin 1 receptor like 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:51,868,549...51,902,454
Ensembl chr 3:51,803,165...51,951,383
JBrowse link
G ILK integrin linked kinase IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000044 NCBI chr 9:3,145,647...3,152,097
Ensembl chr 9:3,145,647...3,159,858
JBrowse link
G IQGAP1 IQ motif containing GTPase activating protein 1 colocalizes_with IEA
ISO
Ensembl
RGD
PMID:23657573 GO_REF:0000107, RGD:11049552 NCBI chr 7:53,020,479...53,129,964
Ensembl chr 7:52,958,106...53,129,960
JBrowse link
G IRF2 interferon regulatory factor 2 IEA Ensembl GO_REF:0000107 NCBI chr15:45,546,779...45,693,241
Ensembl chr15:45,546,779...45,656,928
JBrowse link
G ITGA1 integrin subunit alpha 1 IEA Ensembl GO_REF:0000107 NCBI chr16:32,130,265...32,309,917
Ensembl chr16:32,130,235...32,304,592
JBrowse link
G ITGA11 integrin subunit alpha 11 IEA Ensembl GO_REF:0000107 NCBI chr 1:166,186,601...166,311,046
Ensembl chr 1:166,173,135...166,310,972
JBrowse link
G ITGA2 integrin subunit alpha 2 IEA Ensembl GO_REF:0000107 NCBI chr16:32,336,240...32,440,311
Ensembl chr16:32,336,292...32,437,103
JBrowse link
G ITGA2B integrin subunit alpha 2b ISO (MGI:MGI:3051967|PMID:15031111) MGI PMID:15031111 MGI:MGI:3051967 NCBI chr12:18,860,739...18,877,381
Ensembl chr12:18,775,422...18,877,381
JBrowse link
G ITGA5 integrin subunit alpha 5 colocalizes_with IEA
ISO
(PMID:14970227) Ensembl
BHF-UCL
PMID:14970227 GO_REF:0000107 NCBI chr 5:19,587,361...19,610,580
Ensembl chr 5:19,586,746...19,610,362
JBrowse link
G ITGAV integrin subunit alpha V IEA Ensembl GO_REF:0000107 NCBI chr15:91,604,666...91,711,843
Ensembl chr15:91,604,676...91,711,840
JBrowse link
G ITGB1 integrin subunit beta 1 colocalizes_with ISS
IEA
ISO
IBA
(PMID:14970227)
(PMID:21873635)
UniProt
BHF-UCL
GO_Central
PMID:14970227, PMID:21873635 GO_REF:0000024, GO_REF:0000044 NCBI chr10:56,078,393...56,130,608
Ensembl chr10:56,078,398...56,173,795
JBrowse link
G ITGB1BP1 integrin subunit beta 1 binding protein 1 NOT ISO (PMID:11919189), (PMID:12473654) UniProtKB PMID:11919189, PMID:12473654 NCBI chr 3:126,905,779...126,921,961
Ensembl chr 3:126,905,809...126,923,981
JBrowse link
G ITGB2 integrin subunit beta 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:207,514,281...207,544,108
Ensembl chr13:207,512,954...207,544,108
JBrowse link
G ITGB3 integrin subunit beta 3 colocalizes_with IBA
IEA
ISO
(PMID:21873635) GO_Central
Ensembl
RGD
PMID:21426865, PMID:21873635 GO_REF:0000107, RGD:6907421 NCBI chr12:16,694,466...16,752,228
Ensembl chr12:16,693,505...16,752,292
JBrowse link
G ITGB4 integrin subunit beta 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:5,651,292...5,685,601
Ensembl chr12:5,651,292...5,685,611
JBrowse link
G ITGB5 integrin subunit beta 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:135,468,111...135,587,483
Ensembl chr13:135,467,798...135,587,483
JBrowse link
G ITGB6 integrin subunit beta 6 ISS
IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000024, GO_REF:0000044 NCBI chr15:67,041,516...67,175,409
Ensembl chr15:67,041,519...67,175,234
JBrowse link
G ITGB7 integrin subunit beta 7 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:18,419,432...18,434,376
Ensembl chr 5:18,419,436...18,434,526
JBrowse link
G ITGBL1 integrin subunit beta like 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:70,042,051...70,246,974
Ensembl chr11:70,042,232...70,248,362
JBrowse link
G JAK2 Janus kinase 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:216,849,744...217,002,310
Ensembl chr 1:216,848,686...217,002,148
JBrowse link
G KEAP1 kelch like ECH associated protein 1 ISO RGD PMID:14506708 RGD:2302250 NCBI chr 2:69,280,940...69,290,267
Ensembl chr 2:69,276,336...69,297,835
JBrowse link
G KLF11 Kruppel like factor 11 IEA Ensembl GO_REF:0000107 NCBI chr 3:126,419,011...126,429,890
Ensembl chr 3:126,418,996...126,429,904
JBrowse link
G LASP1 LIM and SH3 protein 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr12:23,222,706...23,267,209
Ensembl chr12:23,222,708...23,267,855
JBrowse link
G LCP1 lymphocyte cytosolic protein 1 IEA Ensembl GO_REF:0000107 NCBI chr11:21,126,504...21,223,543
Ensembl chr11:21,130,045...21,222,009
JBrowse link
G LIMA1 LIM domain and actin binding 1 ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr 5:16,074,436...16,177,122
Ensembl chr 5:16,074,436...16,177,104
JBrowse link
G LIMD1 LIM domains containing 1 IEA Ensembl GO_REF:0000107 NCBI chr13:28,730,192...28,811,584
Ensembl chr13:28,730,260...28,811,616
JBrowse link
G LIMK1 LIM domain kinase 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:11,252,820...11,279,286
Ensembl chr 3:11,252,645...11,279,285
JBrowse link
G LIMS1 LIM zinc finger domain containing 1 colocalizes_with IBA
ISO
IEA
(PMID:21873635)
(PMID:19117955)
GO_Central
UniProtKB
UniProt
PMID:19117955, PMID:21873635 GO_REF:0000044 NCBI chr 3:47,607,737...47,704,921 JBrowse link
G LIMS2 LIM zinc finger domain containing 2 IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000044 NCBI chr15:59,672,508...59,709,380
Ensembl chr15:59,672,538...59,709,380
JBrowse link
G LMLN leishmanolysin like peptidase IEA Ensembl GO_REF:0000107 NCBI chr13:134,596,116...134,656,751
Ensembl chr13:134,596,150...134,656,748
JBrowse link
G LPP LIM domain containing preferred translocation partner in lipoma IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr13:125,782,373...126,478,927
Ensembl chr13:125,782,471...126,489,650
JBrowse link
G LPXN leupaxin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:12,534,780...12,582,756
Ensembl chr 2:12,534,840...12,582,745
JBrowse link
G MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 IEA Ensembl GO_REF:0000107 NCBI chr 3:52,483,028...52,649,480
Ensembl chr 3:52,484,274...52,649,410
JBrowse link
G MAPRE1 microtubule associated protein RP/EB family member 1 IEA Ensembl GO_REF:0000107 NCBI chr17:36,390,698...36,426,435
Ensembl chr17:36,387,062...36,487,494
JBrowse link
G MAPRE2 microtubule associated protein RP/EB family member 2 IEA Ensembl GO_REF:0000107 NCBI chr 6:118,816,967...118,987,762
Ensembl chr 6:118,817,947...119,019,458
JBrowse link
G MDC1 mediator of DNA damage checkpoint 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:23,229,508...23,247,739
Ensembl chr 7:23,229,508...23,247,641
JBrowse link
G MISP mitotic spindle positioning colocalizes_with IEA
ISO
(PMID:23509069) Ensembl
UniProt
PMID:23509069 GO_REF:0000107 NCBI chr 2:77,607,185...77,619,124
Ensembl chr 2:77,602,142...77,619,087
JBrowse link
G MSN moesin colocalizes_with IEA
ISO
(PMID:21282464) Ensembl
BHF-UCL
PMID:21282464 GO_REF:0000107 NCBI chr  X:51,844,197...51,967,674
Ensembl chr  X:51,844,112...51,968,850
JBrowse link
G MTF2 metal response element binding transcription factor 2 IEA Ensembl GO_REF:0000107 NCBI chr 4:124,051,586...124,124,440
Ensembl chr 4:124,050,097...124,124,438
JBrowse link
G MYH9 myosin heavy chain 9 colocalizes_with ISO (MGI:MGI:5619440|PMID:23325791) UniProtKB PMID:23325791 MGI:MGI:5619440 NCBI chr 5:11,365,603...11,456,475 JBrowse link
G NEXN nexilin F-actin binding protein ISO PMID:9832551 UniProt PMID:9832551 RGD:1299387 NCBI chr 6:135,315,000...135,382,911
Ensembl chr 6:135,318,754...135,382,699
JBrowse link
G NME2 NME/NM23 nucleoside diphosphate kinase 2 NOT ISS UniProt GO_REF:0000024 NCBI chr12:27,439,529...27,445,025
Ensembl chr12:27,439,260...27,445,026
JBrowse link
G NOX4 NADPH oxidase 4 ISO RGD PMID:17511984 RGD:2324670 NCBI chr 9:22,622,105...22,776,691
Ensembl chr 9:22,624,195...22,776,554
JBrowse link
G NPHS1 NPHS1 adhesion molecule, nephrin IEA Ensembl GO_REF:0000107 NCBI chr 6:45,248,325...45,271,892
Ensembl chr 6:45,248,317...45,271,550
JBrowse link
G NRP1 neuropilin 1 IEA Ensembl GO_REF:0000107 NCBI chr10:56,280,673...56,430,832
Ensembl chr10:56,280,363...56,430,777
JBrowse link
G OPRM1 opioid receptor mu 1 ISO RGD PMID:17157995 RGD:1625132 NCBI chr 1:12,634,125...12,702,295
Ensembl chr 1:12,528,672...12,702,443
JBrowse link
G PALLD palladin, cytoskeletal associated protein IEA Ensembl GO_REF:0000107 NCBI chr14:20,678,456...21,020,125
Ensembl chr14:20,678,451...21,020,125
JBrowse link
G PARVA parvin alpha IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 2:46,839,081...47,028,102
Ensembl chr 2:46,839,080...47,028,963
JBrowse link
G PARVB parvin beta IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:4,906,667...5,015,494
Ensembl chr 5:4,906,684...5,015,441
JBrowse link
G PARVG parvin gamma IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:4,874,343...4,899,508 JBrowse link
G PDLIM7 PDZ and LIM domain 7 IEA Ensembl GO_REF:0000107 NCBI chr 2:80,453,013...80,472,660
Ensembl chr 2:80,451,888...80,472,660
JBrowse link
G PEAK1 pseudopodium enriched atypical kinase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:57,219,506...57,503,807
Ensembl chr 7:57,223,851...57,503,639
JBrowse link
G PEAK3 PEAK family member 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:76,285,163...76,291,295
Ensembl chr 2:76,285,882...76,291,291
JBrowse link
G PGM5 phosphoglucomutase 5 IEA Ensembl GO_REF:0000107 NCBI chr 1:221,634,516...221,837,764
Ensembl chr 1:221,634,524...221,836,483
JBrowse link
G PHLDB2 pleckstrin homology like domain family B member 2 colocalizes_with IEA
ISO
(PMID:24859005) Ensembl
UniProtKB
PMID:24859005 GO_REF:0000107 NCBI chr13:147,778,420...148,025,943
Ensembl chr13:147,778,053...148,087,744
JBrowse link
G PIK3R2 phosphoinositide-3-kinase regulatory subunit 2 IEA Ensembl GO_REF:0000107 NCBI chr 2:59,637,363...59,652,075 JBrowse link
G PLCXD2 phosphatidylinositol specific phospholipase C X domain containing 2 IEA Ensembl GO_REF:0000107 NCBI chr13:148,033,712...148,087,766
Ensembl chr13:147,778,053...148,087,744
JBrowse link
G PLEC plectin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:696,355...753,859
Ensembl chr 4:685,456...753,859
JBrowse link
G PPFIA1 PTPRF interacting protein alpha 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:3,073,236...3,165,476
Ensembl chr 2:3,073,236...3,164,038
JBrowse link
G PRAG1 PEAK1 related, kinase-activating pseudokinase 1 ISO PMID:27116701
(PMID:27116701)
UniProt
UniProtKB
PMID:27116701 RGD:13514074 NCBI chr17:745,039...793,409 JBrowse link
G PTK2 protein tyrosine kinase 2 IEA UniProt GO_REF:0000044 NCBI chr 4:2,656,606...2,896,060
Ensembl chr 4:2,656,613...2,896,060
JBrowse link
G PTK2B protein tyrosine kinase 2 beta IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000044 NCBI chr14:11,063,662...11,194,196
Ensembl chr14:11,064,492...11,194,194
JBrowse link
G PTPRA protein tyrosine phosphatase receptor type A ISO (MGI:MGI:5442237|PMID:22801373) UniProt PMID:22801373 MGI:MGI:5442237 NCBI chr17:32,638,494...32,797,110
Ensembl chr17:32,633,612...32,797,104
JBrowse link
G PTPRC protein tyrosine phosphatase receptor type C IEA Ensembl GO_REF:0000107 NCBI chr10:21,482,984...21,601,627
Ensembl chr10:21,466,373...21,764,560
JBrowse link
G PXN paxillin IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000044 NCBI chr14:40,227,894...40,278,785
Ensembl chr14:40,227,894...40,278,766
JBrowse link
G RALA RAS like proto-oncogene A IEA Ensembl GO_REF:0000107 NCBI chr18:54,548,523...54,630,746
Ensembl chr18:54,550,238...54,588,980
JBrowse link
G RDX radixin colocalizes_with IEA
ISO
(PMID:21282464) Ensembl
BHF-UCL
PMID:21282464 GO_REF:0000107 NCBI chr 9:38,243,608...38,299,561
Ensembl chr 9:38,220,441...38,376,439
JBrowse link
G REXO2 RNA exonuclease 2 IEA Ensembl GO_REF:0000107 NCBI chr 9:41,977,969...41,988,699
Ensembl chr 9:41,977,969...42,027,281
JBrowse link
G RHOA ras homolog family member A ISS AgBase GO_REF:0000024 NCBI chr13:31,918,484...31,991,207
Ensembl chr13:31,918,836...32,003,722
JBrowse link
G RSU1 Ras suppressor protein 1 IEA Ensembl GO_REF:0000107 NCBI chr10:45,079,014...45,492,073
Ensembl chr10:45,079,047...45,289,422
JBrowse link
G SDC4 syndecan 4 ISO RGD PMID:12493766 RGD:1304266 NCBI chr17:47,650,387...47,670,499 JBrowse link
G SENP1 SUMO specific peptidase 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:78,419,849...78,476,315
Ensembl chr 5:78,423,383...78,476,195
JBrowse link
G SH3KBP1 SH3 domain containing kinase binding protein 1 IEA UniProt GO_REF:0000044 NCBI chr  X:15,887,131...16,229,212
Ensembl chr  X:15,885,412...16,224,238
JBrowse link
G SHROOM4 shroom family member 4 IEA Ensembl GO_REF:0000107 NCBI chr  X:44,301,956...44,543,969
Ensembl chr  X:44,302,074...44,543,549
JBrowse link
G SLA Src like adaptor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:8,166,829...8,247,396 JBrowse link
G SLC6A4 solute carrier family 6 member 4 IEA UniProt GO_REF:0000044 NCBI chr12:46,285,995...46,328,377
Ensembl chr12:46,285,997...46,314,378
JBrowse link
G SORBS1 sorbin and SH3 domain containing 1 ISO HPA GO_REF:0000052 NCBI chr14:106,895,764...107,137,469
Ensembl chr14:106,895,763...107,137,767
JBrowse link
G SORBS2 sorbin and SH3 domain containing 2 IEA UniProt GO_REF:0000044 NCBI chr15:46,585,599...46,910,679
Ensembl chr15:46,585,599...46,795,038
JBrowse link
G SORBS3 sorbin and SH3 domain containing 3 colocalizes_with IEA
ISO
(PMID:9885244) Ensembl
UniProtKB
PMID:9885244 GO_REF:0000107 NCBI chr14:6,802,944...6,831,152
Ensembl chr14:6,808,166...6,828,975
JBrowse link
G SRC SRC proto-oncogene, non-receptor tyrosine kinase ISO (MGI:MGI:5442237|PMID:22801373) UniProt PMID:22801373 MGI:MGI:5442237 NCBI chr17:40,470,970...40,524,862
Ensembl chr17:40,471,009...40,524,860
JBrowse link
G SRCIN1 SRC kinase signaling inhibitor 1 NOT ISO (PMID:14657239) MGI PMID:14657239 NCBI chr12:23,494,487...23,571,560
Ensembl chr12:23,495,960...23,570,772
JBrowse link
G SRP68 signal recognition particle 68 IEA Ensembl GO_REF:0000107 NCBI chr12:5,368,354...5,402,491
Ensembl chr12:5,367,863...5,406,347
JBrowse link
G SYNE2 spectrin repeat containing nuclear envelope protein 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:193,909,563...194,352,550
Ensembl chr 1:193,911,965...194,264,354
JBrowse link
G SYNPO2 synaptopodin 2 IEA Ensembl GO_REF:0000107 NCBI chr 8:104,677,580...104,844,169
Ensembl chr 8:104,677,580...104,873,791
JBrowse link
G TADA1 transcriptional adaptor 1 IEA Ensembl GO_REF:0000107 NCBI chr 4:84,174,481...84,190,077
Ensembl chr 4:84,174,455...84,187,508
JBrowse link
G TES testin LIM domain protein IEA UniProt GO_REF:0000044 NCBI chr18:29,895,878...29,936,248
Ensembl chr18:29,895,878...29,936,233
JBrowse link
G TGFB1I1 transforming growth factor beta 1 induced transcript 1 IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000044 NCBI chr 3:17,093,275...17,099,204
Ensembl chr 3:17,090,071...17,099,020
JBrowse link
G THSD1 thrombospondin type 1 domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr11:15,668,435...15,698,031
Ensembl chr11:15,667,640...15,697,872
JBrowse link
G TLE2 TLE family member 2, transcriptional corepressor IEA Ensembl GO_REF:0000107 NCBI chr 2:75,510,276...75,536,812
Ensembl chr 2:75,510,004...75,536,804
JBrowse link
G TLN1 talin 1 IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000044 NCBI chr 1:236,416,041...236,450,978
Ensembl chr 1:236,416,044...236,450,922
JBrowse link
G TLN2 talin 2 IEA UniProt GO_REF:0000044 NCBI chr 1:109,208,663...109,680,663
Ensembl chr 1:109,208,672...109,680,199
JBrowse link
G TM4SF20 transmembrane 4 L six family member 20 IEA Ensembl GO_REF:0000107 NCBI chr15:128,802,438...128,814,201
Ensembl chr15:128,801,849...128,814,177
JBrowse link
G TNS1 tensin 1 IEA UniProt GO_REF:0000044 NCBI chr15:119,948,133...120,143,797
Ensembl chr15:119,949,528...120,177,353
JBrowse link
G TNS2 tensin 2 IEA UniProt GO_REF:0000044 NCBI chr 5:18,305,488...18,320,784
Ensembl chr 5:18,299,916...18,320,784
JBrowse link
G TNS3 tensin 3 IEA UniProt GO_REF:0000044 NCBI chr18:48,960,938...49,192,434
Ensembl chr18:48,961,023...49,192,433
JBrowse link
G TNS4 tensin 4 IEA UniProt GO_REF:0000044 NCBI chr12:21,924,216...21,952,187
Ensembl chr12:21,924,226...21,952,189
JBrowse link
G TRIP6 thyroid hormone receptor interactor 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:8,713,221...8,716,891
Ensembl chr 3:8,712,126...8,716,873
JBrowse link
G TRPV4 transient receptor potential cation channel subfamily V member 4 ISO PMID:20657843 BHF-UCL PMID:20657843 RGD:8553293 NCBI chr14:41,125,819...41,169,582
Ensembl chr14:41,125,869...41,169,582
JBrowse link
G UBOX5 U-box domain containing 5 IEA Ensembl GO_REF:0000107 NCBI chr17:32,520,612...32,561,534
Ensembl chr17:32,520,648...32,561,533
JBrowse link
G USP33 ubiquitin specific peptidase 33 IEA Ensembl GO_REF:0000107 NCBI chr 6:135,524,372...135,589,742
Ensembl chr 6:135,524,394...135,589,737
JBrowse link
G VASP vasodilator stimulated phosphoprotein IEA Ensembl GO_REF:0000107 NCBI chr 6:51,872,810...51,886,729
Ensembl chr 6:51,872,812...51,886,830
JBrowse link
G VCL vinculin colocalizes_with ISS
ISO
UniProt
RGD
PMID:15506980 GO_REF:0000024, RGD:1624304 NCBI chr14:76,700,143...76,811,875
Ensembl chr14:76,700,168...76,811,875
JBrowse link
G XIRP1 xin actin binding repeat containing 1 colocalizes_with ISO (PMID:15454575) UniProtKB PMID:15454575 NCBI chr13:23,867,476...23,876,850
Ensembl chr13:23,867,478...23,873,589
JBrowse link
G XIRP2 xin actin binding repeat containing 2 colocalizes_with IEA
ISO
(PMID:15454575) Ensembl
UniProtKB
PMID:15454575 GO_REF:0000107 NCBI chr15:73,665,876...73,741,046
Ensembl chr15:73,433,932...73,741,041
JBrowse link
G ZNF384 zinc finger protein 384 ISO RGD PMID:10669742 RGD:1299381 NCBI chr 5:64,003,468...64,025,798
Ensembl chr 5:64,003,216...64,025,798
JBrowse link
G ZYX zyxin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:6,861,072...6,870,256
Ensembl chr18:6,861,072...6,870,273
JBrowse link
hemidesmosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTR3 actin related protein 3 ISO RGD PMID:15093736 RGD:2306209 NCBI chr15:20,104,808...20,171,721
Ensembl chr15:20,104,846...20,208,186
JBrowse link
G COL17A1 collagen type XVII alpha 1 chain IEA Ensembl GO_REF:0000107 NCBI chr14:114,959,404...115,007,734
Ensembl chr14:114,959,408...115,064,783
JBrowse link
G DST dystonin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:28,812,423...29,300,149
Ensembl chr 7:28,812,334...29,300,153
JBrowse link
G EPPK1 epiplakin 1 ISO (PMID:23398049) UniProtKB PMID:23398049 NCBI chr 4:780,276...798,760 JBrowse link
G ERBIN erbb2 interacting protein IEA Ensembl GO_REF:0000107 NCBI chr16:44,415,106...44,533,353
Ensembl chr16:44,225,734...44,533,351
JBrowse link
G ITGA6 integrin subunit alpha 6 IEA Ensembl GO_REF:0000107 NCBI chr15:78,504,108...78,591,779
Ensembl chr15:78,504,078...78,591,779
JBrowse link
G ITGB1 integrin subunit beta 1 ISO RGD PMID:18579774 RGD:2325293 NCBI chr10:56,078,393...56,130,608
Ensembl chr10:56,078,398...56,173,795
JBrowse link
G ITGB4 integrin subunit beta 4 IEA Ensembl GO_REF:0000107 NCBI chr12:5,651,292...5,685,601
Ensembl chr12:5,651,292...5,685,611
JBrowse link
G LAMA3 laminin subunit alpha 3 ISO RGD PMID:8923212 RGD:633107 NCBI chr 6:108,548,818...108,805,700
Ensembl chr 6:108,548,837...108,805,693
JBrowse link
G PLEC plectin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:696,355...753,859
Ensembl chr 4:685,456...753,859
JBrowse link
muscle tendon junction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CIB2 calcium and integrin binding family member 2 ISO (MGI:MGI:3820189|PMID:18611855) MGI PMID:18611855 MGI:MGI:3820189 NCBI chr 7:47,807,806...47,813,400
Ensembl chr 7:47,788,791...47,813,400
JBrowse link
G ITGA7 integrin subunit alpha 7 ISO (MGI:MGI:3820189|PMID:18611855) MGI PMID:18611855 MGI:MGI:3820189 NCBI chr 5:21,126,565...21,150,875
Ensembl chr 5:21,126,565...21,148,776
JBrowse link
G NEURL2 neuralized E3 ubiquitin protein ligase 2 ISO (MGI:MGI:3042352|PMID:14960280) MGI PMID:14960280 MGI:MGI:3042352 NCBI chr17:48,080,035...48,083,176
Ensembl chr17:48,080,048...48,085,417
JBrowse link
G NRAP nebulin related anchoring protein IEA Ensembl GO_REF:0000107 NCBI chr14:123,928,562...124,018,462
Ensembl chr14:123,926,925...124,007,779
JBrowse link
G SMPX small muscle protein X-linked IEA Ensembl GO_REF:0000107 NCBI chr  X:17,889,030...17,938,206
Ensembl chr  X:17,889,024...17,950,803
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 16940
    cellular anatomical entity 16852
      cell junction 2038
        anchoring junction 617
          cell-substrate junction 184
            focal adhesion 171
            hemidesmosome 10
            muscle tendon junction 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.