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ONTOLOGY REPORT - ANNOTATIONS


Term:CCR4-NOT complex
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Accession:GO:0030014 term browser browse the term
Definition:The Ccr4-Not complex is an eukaryotically conserved deadenylase that can initiate cytoplasmic mRNA decay, and reduce translation by releasing poly(A)-binding protein (Pab1/PABPC1). Ccr4-Not contains seven core subunits, including two poly(A)-specific exonucleases, Ccr4/CNOT6/CNOT6L and Caf1/Pop2/CNOT7/CNOT8.


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CCR4-NOT complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot1 CCR4-NOT transcription complex, subunit 1 part_of ISO (PMID:19558367) RGD PMID:19558367 NCBI chr19:9,255,190...9,346,574
Ensembl chr19:9,255,194...9,346,574
JBrowse link
G Cnot10 CCR4-NOT transcription complex, subunit 10 part_of ISS
IEA
IBA
ISO
GO_REF:0000024
GO_REF:0000104
PMID:21873635
(PMID:19558367), (PMID:23232451)
UniProt
RGD
PMID:19558367 PMID:23232451 PMID:21873635 GO_REF:0000024 GO_REF:0000104, RGD:13792537 NCBI chr 8:114,280,486...114,330,110
Ensembl chr 8:114,280,490...114,330,107
JBrowse link
G Cnot11 CCR4-NOT transcription complex, subunit 11 part_of ISO
IBA
ISS
(PMID:19558367), (PMID:23232451), (PMID:23303381)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:19558367 PMID:23232451 PMID:23303381 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 9:41,814,923...41,824,626
Ensembl chr 9:41,814,907...41,824,620
JBrowse link
G Cnot2 CCR4-NOT transcription complex, subunit 2 part_of ISO (PMID:19558367) RGD PMID:19558367 NCBI chr 7:52,130,444...52,222,338
Ensembl chr 7:52,130,441...52,223,575
JBrowse link
G Cnot3 CCR4-NOT transcription complex, subunit 3 part_of ISO (PMID:19558367) RGD PMID:19558367 NCBI chr 1:65,555,924...65,572,167
Ensembl chr 1:65,555,924...65,572,167
JBrowse link
G Cnot4 CCR4-NOT transcription complex, subunit 4 colocalizes_with
part_of
ISO
IBA
(PMID:19558367)
PMID:21873635
RGD PMID:19558367 PMID:21873635 RGD:13792537 NCBI chr 4:63,712,770...63,814,355
Ensembl chr 4:63,712,770...63,814,360
JBrowse link
G Cnot6 CCR4-NOT transcription complex, subunit 6 part_of IBA
IEA
ISS
ISO
PMID:21873635
GO_REF:0000107
GO_REF:0000024
(PMID:19558367)
Ensembl
UniProt
RGD
PMID:19558367 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr10:33,978,785...34,031,025
Ensembl chr10:33,980,831...34,031,025
JBrowse link
G Cnot6l CCR4-NOT transcription complex, subunit 6-like part_of IBA
ISO
PMID:21873635
(PMID:19558367)
RGD PMID:19558367 PMID:21873635 RGD:13792537 NCBI chr14:13,410,501...13,502,511
Ensembl chr14:13,411,281...13,498,203
JBrowse link
G Cnot7 CCR4-NOT transcription complex, subunit 7 part_of ISO (PMID:19558367), (PMID:21336257)
UniProtKB:P31384 (MGI:73869|PMID:7791755)
RGD PMID:7791755 PMID:19558367 PMID:21336257 MGI:73869 NCBI chr16:51,775,416...51,794,581
Ensembl chr16:51,775,412...51,794,576
JBrowse link
G Cnot8 CCR4-NOT transcription complex, subunit 8 part_of ISO (PMID:19558367) RGD PMID:19558367 NCBI chr10:42,281,614...42,294,740
Ensembl chr10:42,281,722...42,294,730
JBrowse link
G Cnot9 CCR4-NOT transcription complex subunit 9 part_of ISO
ISS
(PMID:19558367)
GO_REF:0000024
RGD
UniProt
PMID:19558367 GO_REF:0000024 NCBI chr 9:76,084,269...76,109,111
Ensembl chr 9:76,084,334...76,109,100
JBrowse link
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 part_of ISO (PMID:21336257) RGD PMID:21336257 NCBI chr 1:234,749,138...234,931,219
Ensembl chr 1:234,751,733...234,931,560
JBrowse link
G Patl1 PAT1 homolog 1, processing body mRNA decay factor colocalizes_with ISO
ISS
(PMID:20584987)
GO_REF:0000024
RGD
UniProt
PMID:20584987 GO_REF:0000024 NCBI chr 1:208,831,115...208,862,904
Ensembl chr 1:208,831,115...208,862,857
JBrowse link
G Tnks1bp1 tankyrase 1 binding protein 1 part_of ISO (PMID:19558367) RGD PMID:19558367 NCBI chr 3:70,135,335...70,160,071
Ensembl chr 3:70,137,837...70,160,038
JBrowse link
G Tob1 transducer of ErbB-2.1 part_of ISO
IEA
ISS
(PMID:21336257)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:21336257 GO_REF:0000024 GO_REF:0000107 NCBI chr10:79,163,093...79,165,131
Ensembl chr10:79,160,154...79,165,215
JBrowse link
G Zfp36 zinc finger protein 36 colocalizes_with
part_of
ISS
ISO
IEA
GO_REF:0000024
(MGI:5795819|PMID:20595389)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:20595389 GO_REF:0000024 GO_REF:0000107 MGI:5795819 NCBI chr 1:83,669,084...83,671,564
Ensembl chr 1:83,669,084...83,671,564
JBrowse link
CCR4-NOT core complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot1 CCR4-NOT transcription complex, subunit 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:9,255,190...9,346,574
Ensembl chr19:9,255,194...9,346,574
JBrowse link
G Cnot2 CCR4-NOT transcription complex, subunit 2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:52,130,444...52,222,338
Ensembl chr 7:52,130,441...52,223,575
JBrowse link
G Cnot3 CCR4-NOT transcription complex, subunit 3 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:65,555,924...65,572,167
Ensembl chr 1:65,555,924...65,572,167
JBrowse link
G Cnot7 CCR4-NOT transcription complex, subunit 7 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:51,775,416...51,794,581
Ensembl chr16:51,775,412...51,794,576
JBrowse link
G Cnot8 CCR4-NOT transcription complex, subunit 8 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:42,281,614...42,294,740
Ensembl chr10:42,281,722...42,294,730
JBrowse link
G Cnot9 CCR4-NOT transcription complex subunit 9 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:76,084,269...76,109,111
Ensembl chr 9:76,084,334...76,109,100
JBrowse link

Term paths to the root
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Term Annotations click to browse term
  cellular_component 20010
    protein-containing complex 6011
      intracellular protein-containing complex 775
        CCR4-NOT complex 16
          CCR4-NOT core complex 6
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