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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA strand elongation
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Accession:GO:0022616 term browser browse the term
Definition:The DNA metabolic process in which an existing DNA strand is extended by activities including the addition of nucleotides to the 3' end of the strand.



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DNA strand elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tert telomerase reverse transcriptase involved_in ISO (PMID:16043710) RGD PMID:16043710 NCBI chr 1:29,637,213...29,659,509
Ensembl chr 1:29,637,506...29,659,561
JBrowse link
DNA replication, Okazaki fragment processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dna2 DNA replication helicase/nuclease 2 involved_in ISO
ISS
IEA
(PMID:22570407)
GO_REF:0000024
GO_REF:0000104
RGD
UniProt
PMID:22570407 GO_REF:0000024 GO_REF:0000104 NCBI chr20:25,661,652...25,690,598
Ensembl chr20:25,662,055...25,716,319
JBrowse link
G Slc25a16 solute carrier family 25 member 16 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr20:25,661,158...25,717,558
Ensembl chr20:25,662,055...25,716,319
JBrowse link
DNA strand elongation involved in DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcm3 minichromosome maintenance complex component 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:23,219,169...23,237,314
Ensembl chr 9:23,219,169...23,237,314
JBrowse link
G Mcm4 minichromosome maintenance complex component 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:85,258,443...85,272,144
Ensembl chr11:85,258,443...85,272,144
JBrowse link
G Mcm7 minichromosome maintenance complex component 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:17,042,207...17,049,470
Ensembl chr12:17,042,212...17,050,063
JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit involved_in ISS
ISO
GO_REF:0000024
(PMID:4084590)
UniProt
RGD
PMID:4084590 GO_REF:0000024 NCBI chr  X:58,034,617...58,348,612
Ensembl chr  X:58,034,619...58,348,536
JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:80,748,971...80,755,188
Ensembl chr14:80,748,974...80,755,160
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:154,417,893...154,456,687
Ensembl chr 1:154,418,084...154,456,665
JBrowse link
DNA strand elongation involved in mitotic DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gins1 GINS complex subunit 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:139,724,513...139,745,930
Ensembl chr 3:139,724,490...139,745,936
JBrowse link
lagging strand elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig1 DNA ligase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:74,165,688...74,204,400
Ensembl chr 1:74,165,842...74,204,413
JBrowse link
G Lig3 DNA ligase 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:67,717,796...67,741,141
Ensembl chr10:67,717,812...67,798,414
JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:2175912), (PMID:7910375)
UniProt
RGD
PMID:2175912 PMID:7910375 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr  X:58,034,617...58,348,612
Ensembl chr  X:58,034,619...58,348,536
JBrowse link
leading strand elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07027368.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:26,135,927...26,136,235 JBrowse link
G LOC100362333 DNA-directed DNA polymerase epsilon 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:109,236,160...109,236,825
Ensembl chr 7:109,236,321...109,236,758
JBrowse link
G Pcna proliferating cell nuclear antigen involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:119,499,039...119,502,911
Ensembl chr 3:119,498,810...119,502,995
JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit involved_in ISS
ISO
IBA
GO_REF:0000024
(PMID:2175912), (PMID:7910375)
PMID:21873635
UniProt
RGD
PMID:2175912 PMID:7910375 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr  X:58,034,617...58,348,612
Ensembl chr  X:58,034,619...58,348,536
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:46,345,420...46,393,984
Ensembl chr12:46,345,420...46,393,939
JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:75,973,941...75,977,175
Ensembl chr 5:75,974,717...75,977,231
JBrowse link
G RGD1560349 similar to histone-fold protein CHRAC17 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:26,135,927...26,136,417 JBrowse link
Okazaki fragment processing involved in mitotic DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig1 DNA ligase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:74,165,688...74,204,400
Ensembl chr 1:74,165,842...74,204,413
JBrowse link
positive regulation of DNA strand elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pot1 protection of telomeres 1 involved_in ISO (PMID:16043710) RGD PMID:16043710 NCBI chr 4:54,205,330...54,263,137
Ensembl chr 4:54,205,332...54,263,042
JBrowse link
regulation of DNA strand elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A involved_in ISO (PMID:25016522) RGD PMID:25016522 NCBI chr 2:115,492,374...115,508,401
Ensembl chr 2:115,492,285...115,508,401
JBrowse link
G Actr5 actin related protein 5 involved_in ISO (PMID:25016522) RGD PMID:25016522 NCBI chr 3:147,282,461...147,296,110
Ensembl chr 3:147,282,624...147,296,110
JBrowse link
G Actr8 actin related protein 8 involved_in ISO (PMID:25016522) RGD PMID:25016522 NCBI chr16:5,164,131...5,186,353
Ensembl chr16:5,164,129...5,178,577
JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in ISO (PMID:25016522) RGD PMID:25016522 NCBI chr 3:106,368,455...106,465,716
Ensembl chr 3:106,368,455...106,467,911
JBrowse link
G Ino80b INO80 complex subunit B involved_in ISO (PMID:25016522) RGD PMID:25016522 NCBI chr 4:115,627,907...115,631,069
Ensembl chr 4:115,627,908...115,631,456
JBrowse link
G Ino80c INO80 complex subunit C involved_in ISO (PMID:25016522) RGD PMID:25016522 NCBI chr18:15,378,764...15,398,574
Ensembl chr18:15,378,770...15,393,403
JBrowse link
G Ino80d INO80 complex subunit D involved_in ISO (PMID:25016522) RGD PMID:25016522 NCBI chr 9:64,447,075...64,514,013
Ensembl chr 9:64,457,165...64,515,242
JBrowse link
G Ino80e INO80 complex subunit E involved_in ISO (PMID:25016522) RGD PMID:25016522 NCBI chr 1:181,461,406...181,472,059
Ensembl chr 1:181,461,408...181,472,469
JBrowse link
G Mcrs1 microspherule protein 1 involved_in ISO (PMID:25016522) RGD PMID:25016522 NCBI chr 7:130,383,853...130,392,667
Ensembl chr 7:130,383,853...130,392,685
JBrowse link
G Nfrkb nuclear factor related to kappa B binding protein involved_in ISO (PMID:25016522) RGD PMID:25016522 NCBI chr 8:29,831,802...29,863,360
Ensembl chr 8:29,831,812...29,863,359
JBrowse link
G Nucks1 nuclear casein kinase and cyclin-dependent kinase substrate 1 involved_in ISO (PMID:26323318) RGD PMID:26323318 NCBI chr13:43,345,091...43,374,316
Ensembl chr13:43,345,115...43,370,229
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 involved_in ISO (PMID:25016522) RGD PMID:25016522 NCBI chr 4:120,932,486...120,967,400
Ensembl chr 4:120,932,417...121,029,384
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 involved_in ISO (PMID:25016522) RGD PMID:25016522 NCBI chr 1:95,902,014...95,915,364
Ensembl chr 1:95,901,701...95,915,342
JBrowse link
G Tfpt TCF3 fusion partner involved_in ISO
IEA
(PMID:25016522)
GO_REF:0000107
RGD
Ensembl
PMID:25016522 GO_REF:0000107 NCBI chr 1:65,587,855...65,597,407
Ensembl chr 1:65,582,359...65,611,689
JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 involved_in ISO (PMID:25016522) RGD PMID:25016522 NCBI chr13:55,520,722...55,556,503
Ensembl chr13:55,520,729...55,556,502
JBrowse link
G Yy1 YY1 transcription factor involved_in ISO (PMID:25016522) RGD PMID:25016522 NCBI chr 6:127,706,739...127,731,907
Ensembl chr 6:127,707,596...127,732,747
JBrowse link
telomeric 3' overhang formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dclre1b DNA cross-link repair 1B involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:4462732|PMID:20551906), (MGI:4830207|PMID:20619712)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:20551906 PMID:20619712 GO_REF:0000024 GO_REF:0000107 MGI:4462732 MGI:4830207 NCBI chr 2:191,309,909...191,318,399
Ensembl chr 2:191,309,913...191,318,423
JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease involved_in ISO
IEA
(PMID:16374507)
GO_REF:0000107
RGD
Ensembl
PMID:16374507 GO_REF:0000107 NCBI chr 8:11,618,876...11,680,451
Ensembl chr 8:11,632,354...11,678,279
JBrowse link
G Nbn nibrin involved_in ISO
IEA
(PMID:16374507)
GO_REF:0000107
RGD
Ensembl
PMID:16374507 GO_REF:0000107 NCBI chr 5:29,459,574...29,494,152
Ensembl chr 5:29,459,457...29,494,150
JBrowse link
G Rad50 RAD50 double strand break repair protein involved_in ISO
IEA
(PMID:16374507)
GO_REF:0000107
RGD
Ensembl
PMID:16374507 GO_REF:0000107 NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18734
    cellular process 17431
      cellular metabolic process 9697
        cellular macromolecule metabolic process 3403
          DNA metabolic process 992
            DNA strand elongation 39
              DNA strand elongation involved in DNA replication + 17
              positive regulation of DNA strand elongation 1
              regulation of DNA strand elongation + 17
              telomeric 3' overhang formation 4
Path 2
Term Annotations click to browse term
  biological_process 18734
    metabolic process 11458
      cellular metabolic process 9697
        cellular nitrogen compound metabolic process 6417
          nucleobase-containing compound metabolic process 5335
            nucleic acid metabolic process 4844
              DNA metabolic process 992
                DNA strand elongation 39
                  DNA strand elongation involved in DNA replication + 17
                  positive regulation of DNA strand elongation 1
                  regulation of DNA strand elongation + 17
                  telomeric 3' overhang formation 4
paths to the root