Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:central nervous system neuron development
go back to main search page
Accession:GO:0021954 term browser browse the term
Definition:The process whose specific outcome is the progression of a neuron whose cell body is located in the central nervous system, from initial commitment of the cell to a neuronal fate, to the fully functional differentiated neuron.

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
central nervous system neuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGTPBP1 ATP/GTP binding carboxypeptidase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:96,342,193...96,534,981
Ensembl chr12:96,342,759...96,534,800 		JBrowse link
G ASCL1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:98,182,213...98,185,057
Ensembl chr11:98,182,787...98,183,506 		JBrowse link
G ATP7A ATPase copper transporting alpha acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr  X:66,843,519...66,985,655
Ensembl chr  X:66,843,558...66,985,709 		JBrowse link
G BRINP1 BMP/retinoic acid inducible neural specific 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:20,189,270...20,387,494
Ensembl chr12:20,189,295...20,388,089 		JBrowse link
G BTG2 BTG anti-proliferation factor 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr25:26,032,404...26,036,500
Ensembl chr25:26,034,632...26,036,538 		JBrowse link
G CDK5 cyclin dependent kinase 5 acts_upstream_of_or_within ISO (PMID:8855328) MGI PMID:8855328 NCBI chr21:119,235,687...119,240,163 JBrowse link
G FGF8 fibroblast growth factor 8 ISO development of dopaminergic neurons in the midbrain and serotonergic neurons in the rostral hindbrain RGD PMID:9630220 RGD:2289424 NCBI chr 9:94,797,157...94,803,725
Ensembl chr 9:94,798,088...94,803,629 		JBrowse link
G FGFR1 fibroblast growth factor receptor 1 ISO RGD PMID:17314281 RGD:2325182 NCBI chr 8:36,426,116...36,485,683
Ensembl chr 8:36,427,110...36,485,508 		JBrowse link
G FOXG1 forkhead box G1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr24:5,650,448...5,651,920 JBrowse link
G GABRB1 gamma-aminobutyric acid type A receptor subunit beta1 ISO RGD PMID:15158077 RGD:6480239 NCBI chr27:2,829,385...3,254,292
Ensembl chr27:2,832,450...3,217,326 		JBrowse link
G GATA2 GATA binding protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr22:52,549,112...52,562,911
Ensembl chr22:52,555,738...52,562,909 		JBrowse link
G GBA2 glucosylceramidase beta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:44,852,048...44,865,542
Ensembl chr12:44,852,203...44,868,652 		JBrowse link
G HPRT1 hypoxanthine phosphoribosyltransferase 1 acts_upstream_of_or_within ISO (PMID:9886073) MGI PMID:9886073 NCBI chr  X:109,629,674...109,671,409 JBrowse link
G HPRT1 hypoxanthine phosphoribosyltransferase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr  X:109,630,112...109,664,985 JBrowse link
G KIAA0319 KIAA0319 ortholog acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:47,603,506...47,702,154
Ensembl chr17:47,603,705...47,696,302 		JBrowse link
G LEP leptin acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr21:97,056,913...97,071,161
Ensembl chr21:97,057,529...97,071,220 		JBrowse link
G LINGO1 leucine rich repeat and Ig domain containing 1 acts_upstream_of_or_within ISO (PMID:17726113) MGI PMID:17726113 NCBI chr26:5,485,059...5,690,531
Ensembl chr26:5,688,293...5,690,155 		JBrowse link
G LMX1B LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO (PMID:17151281) MGI PMID:17151281 NCBI chr12:11,443,253...11,526,789
Ensembl chr12:11,444,324...11,526,552 		JBrowse link
G LOC103224854 AGBL carboxypeptidase 4 acts_upstream_of_or_within ISO (PMID:30420556) MGI PMID:30420556 NCBI chr20:82,893,087...84,293,578
Ensembl chr20:84,054,586...84,104,279
Ensembl chr20:84,054,586...84,104,279 		JBrowse link
G MAP2 microtubule associated protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:95,319,649...95,431,106
Ensembl chr10:95,349,157...95,431,320 		JBrowse link
G NEUROG2 neurogenin 2 acts_upstream_of_or_within ISO (PMID:16410412) MGI PMID:16410412 NCBI chr 7:60,296,442...60,299,093
Ensembl chr 7:60,297,586...60,298,404 		JBrowse link
G NOVA2 NOVA alternative splicing regulator 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:39,390,384...39,428,290
Ensembl chr 6:39,393,868...39,428,272 		JBrowse link
G NPY neuropeptide Y involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:34,068,533...34,076,205
Ensembl chr21:34,068,530...34,075,127 		JBrowse link
G NTRK2 neurotrophic receptor tyrosine kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:95,477,612...95,836,734
Ensembl chr12:95,479,447...95,620,364 		JBrowse link
G PALS1 protein associated with LIN7 1, MAGUK p55 family member involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:44,483,005...44,576,017
Ensembl chr24:44,483,199...44,573,172 		JBrowse link
G TAOK1 TAO kinase 1 involved_in ISO (PMID:33565190) UniProt PMID:33565190 NCBI chr16:23,145,629...23,291,694 JBrowse link
G TTC36 tetratricopeptide repeat domain 36 acts_upstream_of_or_within ISO (PMID:31537781) MGI PMID:31537781 NCBI chr 1:109,912,976...109,917,097 JBrowse link
G TTC36 tetratricopeptide repeat domain 36 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr 1:109,913,430...109,917,024 JBrowse link
anterior commissure morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BHLHE22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (PMID:22284184) MGI PMID:22284184 NCBI chr 8:60,476,555...60,483,693
Ensembl chr 8:60,480,825...60,481,976 		JBrowse link
G DRAXIN dorsal inhibitory axon guidance protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:120,073,073...120,099,835
Ensembl chr20:120,073,430...120,085,279 		JBrowse link
G FBXO45 F-box protein 45 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:90,632,389...90,647,431
Ensembl chr15:90,629,330...90,647,191 		JBrowse link
G NFIB nuclear factor I B involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:65,043,819...65,487,832
Ensembl chr12:65,256,407...65,481,485 		JBrowse link
G NR2E1 nuclear receptor subfamily 2 group E member 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:65,663,495...65,686,510
Ensembl chr13:65,664,826...65,685,807 		JBrowse link
G PLXNA4 plexin A4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr21:100,779,307...101,223,184
Ensembl chr21:100,781,779...101,158,801 		JBrowse link
G TSKU tsukushi, small leucine rich proteoglycan acts_upstream_of_or_within
involved_in 		IEA
ISO 		(PMID:23206892) Ensembl
UniProt		 PMID:23206892 GO_REF:0000107 NCBI chr 1:67,988,729...68,003,959
Ensembl chr 1:68,001,429...68,002,490 		JBrowse link
G WDR47 WD repeat domain 47 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:24,535,838...24,604,157
Ensembl chr20:24,535,913...24,604,646 		JBrowse link
central nervous system interneuron axonogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TCTN1 tectonic family member 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:105,855,138...105,898,764
Ensembl chr11:105,855,288...105,891,093 		JBrowse link
central nervous system neuron axonogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARHGAP35 Rho GTPase activating protein 35 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:40,264,466...40,353,157
Ensembl chr 6:40,205,892...40,353,280 		JBrowse link
G ARHGEF28 Rho guanine nucleotide exchange factor 28 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:67,987,275...68,298,359
Ensembl chr 4:68,112,244...68,298,438 		JBrowse link
G ATG7 autophagy related 7 acts_upstream_of_or_within ISO (PMID:20577052) MGI PMID:20577052 NCBI chr22:47,187,305...47,571,309
Ensembl chr22:47,325,614...47,571,070 		JBrowse link
G B4GALT5 beta-1,4-galactosyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:14,270,945...14,357,052
Ensembl chr 2:14,271,141...14,354,159 		JBrowse link
G B4GALT6 beta-1,4-galactosyltransferase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:49,037,348...49,101,769
Ensembl chr18:49,037,225...49,102,502 		JBrowse link
G CHRNB2 cholinergic receptor nicotinic beta 2 subunit acts_upstream_of_or_within ISO (PMID:12097474) MGI PMID:12097474 NCBI chr20:9,245,803...9,255,430
Ensembl chr20:9,247,231...9,253,795 		JBrowse link
G NDEL1 nudE neurodevelopment protein 1 like 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:7,797,858...7,831,211 JBrowse link
G PRKCA protein kinase C alpha ISO RGD PMID:18062921 RGD:2293300 NCBI chr16:54,638,548...55,144,372
Ensembl chr16:54,642,729...54,948,256 		JBrowse link
G PTEN phosphatase and tensin homolog involved_in ISO (PMID:16675393) CACAO PMID:16675393 NCBI chr 9:81,308,058...81,412,386
Ensembl chr 9:81,309,099...81,409,146 		JBrowse link
G PTK2 protein tyrosine kinase 2 acts_upstream_of_or_within ISO (PMID:15378065) MGI PMID:15378065 NCBI chr 8:134,897,511...135,246,300 JBrowse link
central nervous system projection neuron axonogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BHLHE22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (PMID:22284184) MGI PMID:22284184 NCBI chr 8:60,476,555...60,483,693
Ensembl chr 8:60,480,825...60,481,976 		JBrowse link
G CHRNB2 cholinergic receptor nicotinic beta 2 subunit acts_upstream_of_or_within ISO (PMID:15608630)
(PMID:11344259), (PMID:14687550) 		MGI PMID:11344259 PMID:14687550 PMID:15608630 NCBI chr20:9,245,803...9,255,430
Ensembl chr20:9,247,231...9,253,795 		JBrowse link
G DCLK1 doublecortin like kinase 1 acts_upstream_of_or_within ISO (PMID:16387638) MGI PMID:16387638 NCBI chr 3:14,358,997...14,713,621
Ensembl chr 3:14,362,301...14,536,027 		JBrowse link
G DCX doublecortin acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr  X:99,106,291...99,220,479
Ensembl chr  X:99,120,505...99,220,237 		JBrowse link
G EPHB1 EPH receptor B1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:55,144,178...55,592,252
Ensembl chr15:55,143,630...55,589,862 		JBrowse link
G EPHB2 EPH receptor B2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:109,747,883...109,954,936
Ensembl chr20:109,746,925...109,890,777 		JBrowse link
G EPHB3 EPH receptor B3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:4,831,980...4,852,586
Ensembl chr15:4,832,750...4,852,152 		JBrowse link
G KIFBP kinesin family binding protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:62,305,387...62,336,165
Ensembl chr 9:62,305,368...62,336,103 		JBrowse link
G MYCBP2 MYC binding protein 2 acts_upstream_of_or_within
involved_in 		IEA
ISO 		(PMID:17901218) Ensembl
UniProt		 PMID:17901218 GO_REF:0000107 NCBI chr 3:56,128,691...56,412,854
Ensembl chr 3:56,128,428...56,412,923 		JBrowse link
G NR4A2 nuclear receptor subfamily 4 group A member 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:41,715,092...41,724,411
Ensembl chr10:41,715,086...41,723,685 		JBrowse link
G PRDM8 PR/SET domain 8 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:28,610,166...28,631,712
Ensembl chr 7:28,626,265...28,629,707 		JBrowse link
G SPTBN4 spectrin beta, non-erythrocytic 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:34,926,413...35,036,611
Ensembl chr 6:34,930,519...35,035,719 		JBrowse link
cerebellar neuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRK CRK proto-oncogene, adaptor protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:1,102,485...1,135,225
Ensembl chr16:1,102,348...1,135,166 		JBrowse link
G CRKL CRK like proto-oncogene, adaptor protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr19:4,855,633...4,889,674
Ensembl chr19:4,855,611...4,890,302 		JBrowse link
G L1CAM L1 cell adhesion molecule ISO RGD PMID:27027721 RGD:401959323 NCBI chr  X:128,285,128...128,309,173
Ensembl chr  X:128,285,130...128,299,570 		JBrowse link
G NANOS1 nanos C2HC-type zinc finger 1 acts_upstream_of_or_within ISO (PMID:26609159) MGI PMID:26609159 NCBI chr 9:111,823,590...111,825,389 JBrowse link
G SAMD4B sterile alpha motif domain containing 4B acts_upstream_of_or_within ISO (PMID:26609159) MGI PMID:26609159 NCBI chr 6:33,949,045...33,990,410
Ensembl chr 6:33,963,231...33,988,246 		JBrowse link
cerebral cortex GABAergic interneuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRNA2 cholinergic receptor nicotinic alpha 2 subunit part_of ISO RGD PMID:17046198 RGD:152995358 NCBI chr 8:25,571,958...25,591,982
Ensembl chr 8:25,571,863...25,591,788 		JBrowse link
G RAC1 Rac family small GTPase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr28:15,583,609...15,610,753
Ensembl chr28:15,583,516...15,610,328 		JBrowse link
G RAC3 Rac family small GTPase 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:73,919,086...73,921,647
Ensembl chr16:73,919,128...73,925,277 		JBrowse link
cerebral cortex GABAergic interneuron migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARX aristaless related homeobox acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr  X:23,499,791...23,518,333
Ensembl chr  X:23,500,454...23,511,524 		JBrowse link
G CNTN2 contactin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr25:24,262,092...24,296,740
Ensembl chr25:24,261,651...24,296,850 		JBrowse link
G DRD1 dopamine receptor D1 acts_upstream_of_or_within ISO (PMID:17409246) MGI PMID:17409246 NCBI chr23:77,587,340...77,591,434 JBrowse link
G DRD2 dopamine receptor D2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:104,774,632...104,843,417
Ensembl chr 1:104,774,180...104,842,736 		JBrowse link
G FEZF2 FEZ family zinc finger 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr22:23,442,699...23,453,026
Ensembl chr22:23,443,114...23,445,908 		JBrowse link
G LHX6 LIM homeobox 6 acts_upstream_of_or_within ISO (PMID:17376969) MGI PMID:17376969 NCBI chr12:17,364,693...17,392,756
Ensembl chr12:17,366,826...17,386,276 		JBrowse link
chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLIT1 slit guidance ligand 1 NOT|involved_in ISO (PMID:11748139) UniProt PMID:11748139 NCBI chr 9:90,166,710...90,357,983
Ensembl chr 9:90,172,578...90,237,256 		JBrowse link
G SLIT2 slit guidance ligand 2 NOT|involved_in ISO (PMID:11748139) UniProt PMID:11748139 NCBI chr27:29,650,589...30,020,105
Ensembl chr27:29,650,337...29,803,612 		JBrowse link
G SLIT3 slit guidance ligand 3 NOT|involved_in ISO (PMID:11748139) UniProt PMID:11748139 NCBI chr23:70,890,096...71,524,002
Ensembl chr23:70,885,737...71,106,703 		JBrowse link
chemorepulsion involved in postnatal olfactory bulb interneuron migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ROBO1 roundabout guidance receptor 1 involved_in ISO (PMID:15207848) UniProt PMID:15207848 NCBI chr22:97,178,093...98,363,647
Ensembl chr22:98,222,891...98,363,219 		JBrowse link
G SLIT2 slit guidance ligand 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:29,650,589...30,020,105
Ensembl chr27:29,650,337...29,803,612 		JBrowse link
corpus callosum morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BHLHE22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (PMID:22284184) MGI PMID:22284184 NCBI chr 8:60,476,555...60,483,693
Ensembl chr 8:60,480,825...60,481,976 		JBrowse link
G C11H12orf57 chromosome 11 C12orf57 homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:6,974,741...6,976,922
Ensembl chr11:6,974,953...6,976,921 		JBrowse link
G NIN ninein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr24:27,792,147...27,909,577
Ensembl chr24:27,792,397...27,910,129 		JBrowse link
G PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:2,270,126...2,293,705
Ensembl chr16:2,270,085...2,296,825 		JBrowse link
G PRDM8 PR/SET domain 8 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:28,610,166...28,631,712
Ensembl chr 7:28,626,265...28,629,707 		JBrowse link
G SZT2 SZT2 subunit of KICSTOR complex involved_in ISO (PMID:23932106) UniProt PMID:23932106 NCBI chr20:89,360,859...89,422,554 JBrowse link
G SZT2 SZT2 subunit of KICSTOR complex involved_in IEA Ensembl GO_REF:0000107 Ensembl chr20:89,357,739...89,384,234 JBrowse link
G TSKU tsukushi, small leucine rich proteoglycan acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:67,988,729...68,003,959
Ensembl chr 1:68,001,429...68,002,490 		JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:29,732,934...29,864,157
Ensembl chr10:29,729,305...29,864,205 		JBrowse link
corticospinal neuron axon guidance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SCN1B sodium voltage-gated channel beta subunit 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:29,962,993...29,972,845
Ensembl chr 6:29,962,843...29,973,325 		JBrowse link
corticospinal neuron axon guidance through spinal cord term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLIT2 slit guidance ligand 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:29,650,589...30,020,105
Ensembl chr27:29,650,337...29,803,612 		JBrowse link
corticospinal tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BHLHE22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (PMID:22284184) MGI PMID:22284184 NCBI chr 8:60,476,555...60,483,693
Ensembl chr 8:60,480,825...60,481,976 		JBrowse link
G CDH11 cadherin 11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:50,652,628...50,825,640
Ensembl chr 5:50,649,627...50,775,440 		JBrowse link
G EPHA4 EPH receptor A4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:107,344,442...107,501,375
Ensembl chr10:107,352,530...107,499,788 		JBrowse link
G FBXO45 F-box protein 45 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:90,632,389...90,647,431
Ensembl chr15:90,629,330...90,647,191 		JBrowse link
G NIN ninein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr24:27,792,147...27,909,577
Ensembl chr24:27,792,397...27,910,129 		JBrowse link
G PRDM8 PR/SET domain 8 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:28,610,166...28,631,712
Ensembl chr 7:28,626,265...28,629,707 		JBrowse link
G SPG11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO (PMID:28237315) MGI PMID:28237315 NCBI chr26:38,386,000...38,482,236 JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:29,732,934...29,864,157
Ensembl chr10:29,729,305...29,864,205 		JBrowse link
efferent axon development in a lateral line nerve term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHOX2B paired like homeobox 2B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr27:8,602,764...8,608,052
Ensembl chr27:8,603,484...8,606,299 		JBrowse link
embryonic olfactory bulb interneuron precursor migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARX aristaless related homeobox acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr  X:23,499,791...23,518,333
Ensembl chr  X:23,500,454...23,511,524 		JBrowse link
G RAC1 Rac family small GTPase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr28:15,583,609...15,610,753
Ensembl chr28:15,583,516...15,610,328 		JBrowse link
forebrain neuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF8 fibroblast growth factor 8 ISO induction of dopaminergic neurons in the rostral forebrain RGD PMID:9630220 RGD:2289424 NCBI chr 9:94,797,157...94,803,725
Ensembl chr 9:94,798,088...94,803,629 		JBrowse link
G GBX2 gastrulation brain homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:122,177,725...122,184,448
Ensembl chr10:122,182,301...122,184,446 		JBrowse link
G GNAQ G protein subunit alpha q acts_upstream_of_or_within ISO (PMID:15340067) MGI PMID:15340067 NCBI chr12:88,666,375...88,988,989
Ensembl chr12:88,670,424...88,871,154 		JBrowse link
G LHX6 LIM homeobox 6 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:15217369) MGI
TreeGrafter		 PMID:15217369 GO_REF:0000118 NCBI chr12:17,364,693...17,392,756
Ensembl chr12:17,366,826...17,386,276 		JBrowse link
G LHX8 LIM homeobox 8 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:15217369) MGI
TreeGrafter		 PMID:15217369 GO_REF:0000118 NCBI chr20:58,016,078...58,043,651
Ensembl chr20:58,017,298...58,041,479 		JBrowse link
G RAPGEF2 Rap guanine nucleotide exchange factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:105,672,583...105,883,544
Ensembl chr 7:105,624,608...105,884,366 		JBrowse link
G SECISBP2 SECIS binding protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:99,813,954...99,855,682
Ensembl chr12:99,814,043...99,854,852 		JBrowse link
G SOX1 SRY-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:15882093) MGI PMID:15882093 NCBI chr 3:90,201,867...90,204,416 JBrowse link
G SOX1 SRY-box transcription factor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr 3:90,201,885...90,374,906 JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:10803593) MGI PMID:10803593 NCBI chr17:61,750,757...61,769,041 JBrowse link
gonadotrophin-releasing hormone neuronal migration to the hypothalamus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NDNF neuron derived neurotrophic factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:68,320,045...68,356,644
Ensembl chr 7:68,320,690...68,356,577 		JBrowse link
G NRP1 neuropilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:32,474,787...32,632,746
Ensembl chr 9:32,474,309...32,633,101 		JBrowse link
G NRP2 neuropilin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:91,460,179...91,575,408
Ensembl chr10:91,460,373...91,557,430 		JBrowse link
G PLXNA1 plexin A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:53,949,566...54,005,626
Ensembl chr22:53,951,119...53,999,812 		JBrowse link
G PLXNA3 plexin A3 involved_in ISO (PMID:31690636) ARUK-UCL PMID:31690636 NCBI chr  X:128,706,354...128,721,971
Ensembl chr  X:128,708,424...128,721,971 		JBrowse link
G SEMA3A semaphorin 3A involved_in ISO (PMID:21059704) BHF-UCL PMID:21059704 NCBI chr21:64,723,860...64,942,705
Ensembl chr21:64,784,039...64,939,682 		JBrowse link
G SEMA3E semaphorin 3E involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:65,255,610...65,529,021
Ensembl chr21:65,415,373...65,533,090 		JBrowse link
hypothalamus gonadotrophin-releasing hormone neuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NHLH2 nescient helix-loop-helix 2 acts_upstream_of_or_within_positive_effect IEA Ensembl GO_REF:0000107 NCBI chr20:17,865,226...17,869,955
Ensembl chr20:17,867,929...17,868,336 		JBrowse link
G UBB ubiquitin B acts_upstream_of_or_within ISO (PMID:18299572) MGI PMID:18299572 NCBI chr16:15,279,271...15,289,111 JBrowse link
olfactory bulb interneuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF5 activating transcription factor 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:43,085,634...43,090,234
Ensembl chr 6:43,084,665...43,091,751 		JBrowse link
G ROBO1 roundabout guidance receptor 1 involved_in ISO (PMID:17360927) UniProt PMID:17360927 NCBI chr22:97,178,093...98,363,647
Ensembl chr22:98,222,891...98,363,219 		JBrowse link
G ROBO2 roundabout guidance receptor 2 involved_in ISO (PMID:17360927) UniProt PMID:17360927 NCBI chr22:99,334,033...101,101,924 JBrowse link
G SALL3 spalt like transcription factor 3 acts_upstream_of_or_within ISO (PMID:18260139) MGI PMID:18260139 NCBI chr18:1,154,033...1,174,030
Ensembl chr18:1,156,502...1,173,946 		JBrowse link
G WNT5A Wnt family member 5A involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:16,809,454...16,836,815
Ensembl chr22:16,809,451...16,825,048 		JBrowse link
postnatal olfactory bulb interneuron migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGFR1 fibroblast growth factor receptor 1 ISO RGD PMID:20083104 RGD:2325172 NCBI chr 8:36,426,116...36,485,683
Ensembl chr 8:36,427,110...36,485,508 		JBrowse link
pyramidal neuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG7 autophagy related 7 acts_upstream_of_or_within ISO (PMID:16625205) MGI PMID:16625205 NCBI chr22:47,187,305...47,571,309
Ensembl chr22:47,325,614...47,571,070 		JBrowse link
G ATP7A ATPase copper transporting alpha acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr  X:66,843,519...66,985,655
Ensembl chr  X:66,843,558...66,985,709 		JBrowse link
G DCLK2 doublecortin like kinase 2 acts_upstream_of_or_within ISO (PMID:19342486) MGI PMID:19342486 NCBI chr 7:96,526,698...96,706,958
Ensembl chr 7:96,527,073...96,707,347 		JBrowse link
G DCX doublecortin acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr  X:99,106,291...99,220,479
Ensembl chr  X:99,120,505...99,220,237 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in ISO (PMID:20410112) UniProt PMID:20410112 NCBI chr 9:114,234,344...114,354,736
Ensembl chr 9:114,234,250...114,354,704 		JBrowse link
G OGDH oxoglutarate dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:13,975,825...14,070,216
Ensembl chr21:13,973,845...14,070,731 		JBrowse link
G PLXNA3 plexin A3 acts_upstream_of_or_within ISO (PMID:11683995) MGI PMID:11683995 NCBI chr  X:128,706,354...128,721,971
Ensembl chr  X:128,708,424...128,721,971 		JBrowse link
G SCYL2 SCY1 like pseudokinase 2 involved_in ISO (PMID:26203146) UniProt PMID:26203146 NCBI chr11:95,582,856...95,655,974 JBrowse link
G SLC4A10 solute carrier family 4 member 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:47,029,924...47,390,116
Ensembl chr10:47,030,231...47,390,123 		JBrowse link
G UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:35,684,395...35,685,481
Ensembl chr23:35,684,495...35,685,670 		JBrowse link
pyramidal neuron migration to cerebral cortex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DISC1 DISC1 scaffold protein ISO RGD PMID:16299498 RGD:5509783 NCBI chr25:68,886,451...69,274,774
Ensembl chr25:68,946,430...69,263,198 		JBrowse link
G FOXG1 forkhead box G1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr24:5,650,448...5,651,920 JBrowse link
G ZMIZ1 zinc finger MIZ-type containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:52,150,810...52,414,793
Ensembl chr 9:52,148,075...52,259,728 		JBrowse link
spinal cord ventral commissure morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADARB1 adenosine deaminase RNA specific B1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:88,780,954...88,915,672
Ensembl chr 2:88,833,707...88,918,066 		JBrowse link
G DCC DCC netrin 1 receptor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:27,437,224...28,623,717
Ensembl chr18:27,442,489...28,212,697 		JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:9,302,890...9,561,287
Ensembl chr10:9,304,645...9,369,115 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19940
    cellular process 19399
      cellular developmental process 4746
        cell development 3336
          neuron development 1420
            central nervous system neuron development 118
              central nervous system neuron axonogenesis + 44
              cerebellar neuron development + 5
              forebrain neuron development + 48
Path 2
Term Annotations click to browse term
  biological_process 19940
    developmental process 7014
      anatomical structure development 6563
        multicellular organism development 5257
          system development 4566
            nervous system development 2856
              neurogenesis 2097
                generation of neurons 1815
                  neuron differentiation 1733
                    neuron development 1420
                      central nervous system neuron development 118
                        central nervous system neuron axonogenesis + 44
                        cerebellar neuron development + 5
                        forebrain neuron development + 48
paths to the root