Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:cerebral cortex neuron differentiation
go back to main search page
Accession:GO:0021895 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires specialized features of a neuron residing in the cerebral cortex.


show annotations for term's descendants           Sort by:
cerebral cortex neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C21orf91 chromosome 21 open reading frame 91 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr21:17,788,974...17,819,356
Ensembl chr21:17,788,974...17,819,386 		JBrowse link
G CHD5 chromodomain helicase DNA binding protein 5 involved_in ISS UniProt GO_REF:0000024 NCBI chr 1:6,101,787...6,180,321
Ensembl chr 1:6,101,787...6,180,321 		JBrowse link
G ELAVL4 ELAV like RNA binding protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:32245946) Ensembl
MGI		 PMID:32245946 GO_REF:0000107 NCBI chr 1:50,048,055...50,203,772
Ensembl chr 1:50,024,029...50,203,772 		JBrowse link
G EMX1 empty spiracles homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23178126) Ensembl
MGI		 PMID:23178126 GO_REF:0000107 NCBI chr 2:72,916,189...72,934,891
Ensembl chr 2:72,916,260...72,936,071 		JBrowse link
G EOMES eomesodermin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:27,715,953...27,722,713
Ensembl chr 3:27,715,949...27,722,711 		JBrowse link
G FEZF2 FEZ family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21338885) Ensembl
MGI		 PMID:21338885 GO_REF:0000107 NCBI chr 3:62,369,681...62,373,550
Ensembl chr 3:62,369,681...62,374,324 		JBrowse link
G GDPD5 glycerophosphodiester phosphodiesterase domain containing 5 acts_upstream_of_or_within ISO (PMID:22951639) MGI PMID:22951639 NCBI chr11:75,434,640...75,525,941
Ensembl chr11:75,434,640...75,525,941 		JBrowse link
G HPRT1 hypoxanthine phosphoribosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11297820) Ensembl
MGI		 PMID:11297820 GO_REF:0000107 NCBI chr  X:134,460,165...134,500,668
Ensembl chr  X:134,460,165...134,520,513 		JBrowse link
G ID4 inhibitor of DNA binding 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15469968) Ensembl
MGI		 PMID:15469968 GO_REF:0000107 NCBI chr 6:19,837,370...19,842,197
Ensembl chr 6:19,837,370...19,842,197 		JBrowse link
G LHX6 LIM homeobox 6 acts_upstream_of_or_within ISO (PMID:18339674) MGI PMID:18339674 NCBI chr 9:122,202,582...122,228,957
Ensembl chr 9:122,202,577...122,229,626 		JBrowse link
G NKX2-1 NK2 homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18339674) Ensembl
MGI		 PMID:18339674 GO_REF:0000107 NCBI chr14:36,516,397...36,520,232
Ensembl chr14:36,516,392...36,521,149 		JBrowse link
G NR2E1 nuclear receptor subfamily 2 group E member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12902391), (PMID:15950290) Ensembl
MGI		 PMID:12902391 PMID:15950290 GO_REF:0000107 NCBI chr 6:108,166,022...108,188,809
Ensembl chr 6:108,166,022...108,188,805 		JBrowse link
G OPHN1 oligophrenin 1 involved_in IMP (PMID:27160703) ARUK-UCL PMID:27160703 NCBI chr  X:68,042,344...68,433,841
Ensembl chr  X:67,949,349...68,433,913 		JBrowse link
G PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:16144905 GO_REF:0000107 RGD:1601501 NCBI chr17:2,593,183...2,685,615
Ensembl chr17:2,593,210...2,685,615 		JBrowse link
G PEX5 peroxisomal biogenesis factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9288097) Ensembl
MGI		 PMID:9288097 GO_REF:0000107 NCBI chr12:7,188,653...7,218,574
Ensembl chr12:7,188,685...7,218,574 		JBrowse link
G SIN3A SIN3 transcription regulator family member A involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr15:75,369,379...75,455,815
Ensembl chr15:75,369,379...75,455,842 		JBrowse link
G TOX thymocyte selection associated high mobility group box involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:58,805,412...59,119,147
Ensembl chr 8:58,805,412...59,119,147 		JBrowse link
G ZNF335 zinc finger protein 335 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23178126) Ensembl
MGI		 PMID:23178126 GO_REF:0000107 NCBI chr20:45,948,660...45,972,203
Ensembl chr20:45,948,660...45,972,203 		JBrowse link
Cajal-Retzius cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HES1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:18579678) Ensembl
MGI		 PMID:18579678 GO_REF:0000107 NCBI chr 3:194,136,148...194,138,732
Ensembl chr 3:194,136,148...194,138,732 		JBrowse link
G NEUROG2 neurogenin 2 acts_upstream_of ISO (PMID:18579678) MGI PMID:18579678 NCBI chr 4:112,513,516...112,516,180
Ensembl chr 4:112,513,516...112,516,180 		JBrowse link
G PSEN1 presenilin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15548218) Ensembl
MGI		 PMID:15548218 GO_REF:0000107 NCBI chr14:73,136,417...73,223,691
Ensembl chr14:73,136,418...73,223,691 		JBrowse link
cerebral cortex GABAergic interneuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRNA2 cholinergic receptor nicotinic alpha 2 subunit part_of ISO RGD PMID:17046198 RGD:152995358 NCBI chr 8:27,459,756...27,479,261
Ensembl chr 8:27,459,756...27,479,883 		JBrowse link
G RAC1 Rac family small GTPase 1 acts_upstream_of_or_within ISO (PMID:23258346) MGI PMID:23258346 NCBI chr 7:6,374,527...6,403,967
Ensembl chr 7:6,374,527...6,403,967 		JBrowse link
G RAC3 Rac family small GTPase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23258346) Ensembl
MGI		 PMID:23258346 GO_REF:0000107 NCBI chr17:82,031,678...82,034,204
Ensembl chr17:82,031,678...82,034,204 		JBrowse link
cerebral cortex GABAergic interneuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in IEP (PMID:12050665) UniProt PMID:12050665 NCBI chr12:102,957,674...102,960,513
Ensembl chr12:102,957,674...102,960,513 		JBrowse link
G DLX1 distal-less homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15028753) Ensembl
MGI		 PMID:15028753 GO_REF:0000107 NCBI chr 2:172,085,507...172,089,674
Ensembl chr 2:172,084,740...172,089,677 		JBrowse link
G DLX2 distal-less homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15028753) Ensembl
MGI		 PMID:15028753 GO_REF:0000107 NCBI chr 2:172,099,438...172,102,900
Ensembl chr 2:172,099,438...172,102,900 		JBrowse link
G NKX2-1 NK2 homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18786356)
(PMID:15028753)		 Ensembl
MGI		 PMID:15028753 PMID:18786356 GO_REF:0000107 NCBI chr14:36,516,397...36,520,232
Ensembl chr14:36,516,392...36,521,149 		JBrowse link
cerebral cortex GABAergic interneuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DLX1 distal-less homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17678855) Ensembl
MGI		 PMID:17678855 GO_REF:0000107 NCBI chr 2:172,085,507...172,089,674
Ensembl chr 2:172,084,740...172,089,677 		JBrowse link
G DLX2 distal-less homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17678855) Ensembl
MGI		 PMID:17678855 GO_REF:0000107 NCBI chr 2:172,099,438...172,102,900
Ensembl chr 2:172,099,438...172,102,900 		JBrowse link
cerebral cortex GABAergic interneuron migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARX aristaless related homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17460091) Ensembl
MGI		 PMID:17460091 GO_REF:0000107 NCBI chr  X:25,003,694...25,015,965
Ensembl chr  X:25,003,694...25,016,420 		JBrowse link
G DRD1 dopamine receptor D1 involved_in
acts_upstream_of_or_within		 IEA
ISO
ISS		 (PMID:17409246) Ensembl
MGI
BHF-UCL		 PMID:17409246 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:175,440,036...175,444,182
Ensembl chr 5:175,440,036...175,444,182 		JBrowse link
G DRD2 dopamine receptor D2 involved_in
acts_upstream_of_or_within		 IEA
ISO
ISS		 (PMID:17409246) Ensembl
MGI
BHF-UCL		 PMID:17409246 GO_REF:0000024 GO_REF:0000107 NCBI chr11:113,409,605...113,475,398
Ensembl chr11:113,409,605...113,475,691 		JBrowse link
G FEZF2 FEZ family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21338885) Ensembl
MGI		 PMID:21338885 GO_REF:0000107 NCBI chr 3:62,369,681...62,373,550
Ensembl chr 3:62,369,681...62,374,324 		JBrowse link
G LHX6 LIM homeobox 6 involved_in
acts_upstream_of_or_within		 ISS
ISO		 (PMID:17376969) UniProt
MGI		 PMID:17376969 GO_REF:0000024 NCBI chr 9:122,202,582...122,228,957
Ensembl chr 9:122,202,577...122,229,626 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19669
    developmental process 7610
      anatomical structure development 7020
        forebrain development 562
          cerebral cortex neuron differentiation 30
            Cajal-Retzius cell differentiation 3
            cerebral cortex GABAergic interneuron differentiation + 12
Path 2
Term Annotations click to browse term
  biological_process 19669
    developmental process 7610
      anatomical structure development 7020
        multicellular organism development 5632
          system development 4908
            nervous system development 3048
              neurogenesis 2140
                generation of neurons 1853
                  neuron differentiation 1769
                    central nervous system neuron differentiation 222
                      cerebral cortex neuron differentiation 30
                        Cajal-Retzius cell differentiation 3
                        cerebral cortex GABAergic interneuron differentiation + 12
paths to the root