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ONTOLOGY REPORT - ANNOTATIONS


Term:cerebral cortex neuron differentiation
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Accession:GO:0021895 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires specialized features of a neuron residing in the cerebral cortex.



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cerebral cortex neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf1 CUGBP, Elav-like family member 1 acts_upstream_of_or_within ISO (MGI:6405956|PMID:32245946) RGD PMID:32245946 MGI:6405956 NCBI chr 3:76,924,591...76,999,429
Ensembl chr 3:76,924,613...76,999,426
JBrowse link
G Chd5 chromodomain helicase DNA binding protein 5 involved_in ISS
ISO
GO_REF:0000024
(MGI:5532595|PMID:23948251)
UniProt
RGD
PMID:23948251 GO_REF:0000024 MGI:5532595 NCBI chr 5:162,848,273...162,898,997
Ensembl chr 5:162,848,394...162,896,291
JBrowse link
G Elavl4 ELAV like RNA binding protein 4 acts_upstream_of_or_within ISO (MGI:6405956|PMID:32245946) RGD PMID:32245946 MGI:6405956 NCBI chr 5:125,056,848...125,200,543
Ensembl chr 5:125,056,848...125,200,446
JBrowse link
G Emx1 empty spiracles homeobox 1 acts_upstream_of_or_within ISO MGI:2682313 (MGI:5468205|PMID:23178126) RGD PMID:23178126 MGI:5468205 NCBI chr 4:117,725,148...117,741,616
Ensembl chr 4:117,725,155...117,741,613
JBrowse link
G Eomes eomesodermin involved_in ISO (MGI:3831469|PMID:18940588) RGD PMID:18940588 MGI:3831469 NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316
JBrowse link
G Fezf2 Fez family zinc finger 2 acts_upstream_of_or_within ISO MGI:3046867 (MGI:5140686|PMID:21338885) RGD PMID:21338885 MGI:5140686 NCBI chr15:12,768,614...12,777,554
Ensembl chr15:12,773,762...12,777,554
JBrowse link
G Gdpd5 glycerophosphodiester phosphodiesterase domain containing 5 acts_upstream_of_or_within ISO MGI:5302017 (MGI:5437785|PMID:22951639) RGD PMID:22951639 MGI:5437785 NCBI chr 1:153,679,718...153,761,452
Ensembl chr 1:153,679,718...153,761,446
JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 acts_upstream_of_or_within ISO MGI:1857299 (MGI:3622601|PMID:11297820) RGD PMID:11297820 MGI:3622601 NCBI chr  X:132,736,175...132,768,149
Ensembl chr  X:132,736,096...132,768,154
JBrowse link
G Id4 inhibitor of DNA binding 4, HLH protein acts_upstream_of_or_within ISO MGI:3505549 (MGI:3487176|PMID:15469968) RGD PMID:15469968 MGI:3487176 NCBI chr17:16,389,387...16,391,956
Ensembl chr17:16,389,387...16,392,470
JBrowse link
G Lhx6 LIM homeobox 6 acts_upstream_of_or_within ISO MGI:108067 (MGI:3794908|PMID:18339674) RGD PMID:18339674 MGI:3794908 NCBI chr 3:19,432,439...19,456,268
Ensembl chr 3:19,433,494...19,456,061
JBrowse link
G Nkx2-1 NK2 homeobox 1 acts_upstream_of_or_within ISO MGI:1306803|MGI:1857494 (MGI:3794908|PMID:18339674) RGD PMID:18339674 MGI:3794908 NCBI chr 6:73,996,601...74,001,483
Ensembl chr 6:73,996,601...73,999,791
JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within ISO MGI:2151350 (MGI:3588942|PMID:15950290), (MGI:3607388|PMID:12902391) RGD PMID:12902391 PMID:15950290 MGI:3588942 MGI:3607388 NCBI chr20:46,050,134...46,070,569
Ensembl chr20:46,050,414...46,073,949
JBrowse link
G Ophn1 oligophrenin 1 involved_in ISO (PMID:27160703) RGD PMID:27160703 NCBI chr  X:63,599,746...63,976,678
Ensembl chr  X:63,603,042...63,976,633
JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 IMP RGD PMID:16144905 RGD:1601501 NCBI chr10:59,533,042...59,591,808
Ensembl chr10:59,534,117...59,591,808
JBrowse link
G Pex5 peroxisomal biogenesis factor 5 acts_upstream_of_or_within ISO MGI:2154454 (MGI:1096198|PMID:9288097) RGD PMID:9288097 MGI:1096198 NCBI chr 4:157,270,671...157,296,432
Ensembl chr 4:157,270,672...157,296,431
JBrowse link
G RGD1563888 similar to DNA segment, Chr 16, ERATO Doi 472, expressed involved_in ISO (MGI:5908509|PMID:27404227) RGD PMID:27404227 MGI:5908509 NCBI chr11:17,229,129...17,262,307
Ensembl chr11:17,229,138...17,262,483
JBrowse link
G Sin3a SIN3 transcription regulator family member A involved_in ISO (MGI:6152283|PMID:27399968) RGD PMID:27399968 MGI:6152283 NCBI chr 8:57,481,539...57,536,195
Ensembl chr 8:57,481,573...57,536,192
JBrowse link
G Tox thymocyte selection-associated high mobility group box involved_in ISO (MGI:5632052|PMID:25527292) RGD PMID:25527292 MGI:5632052 NCBI chr 5:19,874,994...20,171,272
Ensembl chr 5:19,874,467...20,171,272
JBrowse link
G Zfp335 zinc finger protein 335 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5470136|MGI:95387 (MGI:5468205|PMID:23178126)
Ensembl
RGD
PMID:23178126 GO_REF:0000107 MGI:5468205 NCBI chr 3:153,618,587...153,648,213
Ensembl chr 3:153,627,467...153,647,054
JBrowse link
Cajal-Retzius cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Psen1 presenilin 1 acts_upstream_of_or_within ISO MGI:2149116 (MGI:3603707|PMID:15548218) RGD PMID:15548218 MGI:3603707 NCBI chr 6:103,323,014...103,375,088
Ensembl chr 6:103,323,120...103,371,650
JBrowse link
cerebral cortex GABAergic interneuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO MGI:2180784 (MGI:5569596|PMID:23258346) RGD PMID:23258346 MGI:5569596 NCBI chr12:11,037,028...11,057,251
Ensembl chr12:11,036,698...11,057,251
JBrowse link
G Rac3 Rac family small GTPase 3 acts_upstream_of_or_within ISO MGI:97845 (MGI:5569596|PMID:23258346) RGD PMID:23258346 MGI:5569596 NCBI chr10:106,002,808...106,005,244 JBrowse link
cerebral cortex GABAergic interneuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 involved_in ISO (PMID:12050665) RGD PMID:12050665 NCBI chr 7:21,904,153...21,906,003
Ensembl chr 7:21,903,126...21,905,993
JBrowse link
G Dlx1 distal-less homeobox 1 acts_upstream_of_or_within ISO MGI:94902 (MGI:3574146|PMID:15028753) RGD PMID:15028753 MGI:3574146 NCBI chr 3:56,356,190...56,360,780
Ensembl chr 3:56,356,190...56,360,780
JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within ISO MGI:94901 (MGI:3574146|PMID:15028753) RGD PMID:15028753 MGI:3574146 NCBI chr 3:56,371,347...56,373,230
Ensembl chr 3:56,370,483...56,373,597
JBrowse link
G Nkx2-1 NK2 homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857494|MGI:3653645 (MGI:3574146|PMID:15028753), (MGI:3834782|PMID:18786356)
Ensembl
RGD
PMID:15028753 PMID:18786356 GO_REF:0000107 MGI:3574146 MGI:3834782 NCBI chr 6:73,996,601...74,001,483
Ensembl chr 6:73,996,601...73,999,791
JBrowse link
cerebral cortex GABAergic interneuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlx1 distal-less homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:94902 (MGI:3775335|PMID:17678855)
Ensembl
RGD
PMID:17678855 GO_REF:0000107 MGI:3775335 NCBI chr 3:56,356,190...56,360,780
Ensembl chr 3:56,356,190...56,360,780
JBrowse link
G Dlx2 distal-less homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:94901 (MGI:3775335|PMID:17678855)
Ensembl
RGD
PMID:17678855 GO_REF:0000107 MGI:3775335 NCBI chr 3:56,371,347...56,373,230
Ensembl chr 3:56,370,483...56,373,597
JBrowse link
cerebral cortex GABAergic interneuron migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arx aristaless related homeobox involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2679972 (MGI:3709215|PMID:17460091)
Ensembl
RGD
PMID:17460091 GO_REF:0000107 MGI:3709215 NCBI chr  X:58,016,233...58,028,149
Ensembl chr  X:58,016,233...58,028,142
JBrowse link
G Cntn2 contactin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:2155629|PMID:11714688)
Ensembl
RGD
PMID:11714688 GO_REF:0000107 MGI:2155629 NCBI chr13:43,942,868...43,975,973
Ensembl chr13:43,947,265...43,975,887
JBrowse link
G Drd1 dopamine receptor D1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857875 (MGI:3709536|PMID:17409246)
Ensembl
RGD
PMID:17409246 GO_REF:0000107 MGI:3709536 NCBI chr17:10,540,440...10,544,971
Ensembl chr17:10,540,558...10,545,002
JBrowse link
G Drd2 dopamine receptor D2 acts_upstream_of_or_within ISO MGI:1857875 (MGI:3709536|PMID:17409246) RGD PMID:17409246 MGI:3709536 NCBI chr 8:49,708,903...49,772,888
Ensembl chr 8:49,708,927...49,772,875
JBrowse link
G Fezf2 Fez family zinc finger 2 acts_upstream_of_or_within ISO MGI:3046867 (MGI:5140686|PMID:21338885) RGD PMID:21338885 MGI:5140686 NCBI chr15:12,768,614...12,777,554
Ensembl chr15:12,773,762...12,777,554
JBrowse link
G Lhx6 LIM homeobox 6 acts_upstream_of_or_within ISO MGI:3702518 (MGI:3702257|PMID:17376969) RGD PMID:17376969 MGI:3702257 NCBI chr 3:19,432,439...19,456,268
Ensembl chr 3:19,433,494...19,456,061
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19497
    developmental process 6889
      anatomical structure development 6306
        forebrain development 511
          cerebral cortex neuron differentiation 29
            Cajal-Retzius cell differentiation 1
            cerebral cortex GABAergic interneuron differentiation + 12
Path 2
Term Annotations click to browse term
  biological_process 19497
    developmental process 6889
      anatomical structure development 6306
        multicellular organism development 5727
          system development 5373
            nervous system development 2743
              neurogenesis 1965
                generation of neurons 1805
                  neuron differentiation 1631
                    central nervous system neuron differentiation 215
                      cerebral cortex neuron differentiation 29
                        Cajal-Retzius cell differentiation 1
                        cerebral cortex GABAergic interneuron differentiation + 12
paths to the root