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ONTOLOGY REPORT - ANNOTATIONS


Term:cerebral cortex neuron differentiation
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Accession:GO:0021895 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires specialized features of a neuron residing in the cerebral cortex.


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cerebral cortex neuron differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf1 CUGBP, Elav-like family member 1 ISO (MGI:6405956|PMID:32245946) RGD PMID:32245946 MGI:6405956 NCBI chr 3:79,768,900...79,844,548
Ensembl chr 3:79,823,945...79,842,082
JBrowse link
G Chd5 chromodomain helicase DNA binding protein 5 ISS
ISO
GO_REF:0000024
(MGI:5532595|PMID:23948251)
UniProt
RGD
PMID:23948251 GO_REF:0000024 MGI:5532595 NCBI chr 5:169,519,212...169,572,059
Ensembl chr 5:169,519,212...169,567,107
JBrowse link
G Elavl4 ELAV like RNA binding protein 4 ISO
IEA
(MGI:6405956|PMID:32245946)
GO_REF:0000107
RGD
Ensembl
PMID:32245946 GO_REF:0000107 MGI:6405956 NCBI chr 5:130,001,387...130,144,557
Ensembl chr 5:130,001,372...130,085,838
JBrowse link
G Emx1 empty spiracles homeobox 1 ISO MGI:2682313 (MGI:5468205|PMID:23178126) RGD PMID:23178126 MGI:5468205 NCBI chr 4:116,967,646...116,984,136
Ensembl chr 4:116,968,000...116,985,551
JBrowse link
G Eomes eomesodermin ISO (MGI:3831469|PMID:18940588) RGD PMID:18940588 MGI:3831469 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493
JBrowse link
G Fezf2 Fez family zinc finger 2 ISO MGI:3046867 (MGI:5140686|PMID:21338885) RGD PMID:21338885 MGI:5140686 NCBI chr15:12,825,333...12,831,496
Ensembl chr15:12,827,707...12,831,496
JBrowse link
G Gdpd5 glycerophosphodiester phosphodiesterase domain containing 5 ISO MGI:5302017 (MGI:5437785|PMID:22951639) RGD PMID:22951639 MGI:5437785 NCBI chr 1:164,337,176...164,418,056
Ensembl chr 1:164,380,577...164,418,593
JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 ISO MGI:1857299 (MGI:3622601|PMID:11297820) RGD PMID:11297820 MGI:3622601 NCBI chr  X:158,196,640...158,228,815
Ensembl chr  X:158,197,149...158,228,749
JBrowse link
G Id4 inhibitor of DNA binding 4, HLH protein ISO MGI:3505549 (MGI:3487176|PMID:15469968) RGD PMID:15469968 MGI:3487176 NCBI chr17:16,692,557...16,695,126
Ensembl chr17:16,692,557...16,695,126
JBrowse link
G Lhx6 LIM homeobox 6 ISO MGI:108067 (MGI:3794908|PMID:18339674) RGD PMID:18339674 MGI:3794908 NCBI chr 3:15,409,349...15,433,504
Ensembl chr 3:15,411,939...15,433,252
JBrowse link
G Nkx2-1 NK2 homeobox 1 ISO MGI:1306803|MGI:1857494 (MGI:3794908|PMID:18339674) RGD PMID:18339674 MGI:3794908 NCBI chr 6:77,418,096...77,423,383
Ensembl chr 6:77,418,096...77,421,286
JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 ISO MGI:2151350 (MGI:3588942|PMID:15950290), (MGI:3607388|PMID:12902391) RGD PMID:12902391 PMID:15950290 MGI:3588942 MGI:3607388 NCBI chr20:47,286,843...47,306,318
Ensembl chr20:47,288,137...47,306,318
JBrowse link
G Ophn1 oligophrenin 1 ISO (PMID:27160703) RGD PMID:27160703 NCBI chr  X:68,185,865...68,579,518
Ensembl chr  X:68,189,161...68,563,137
JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 IMP RGD PMID:16144905 RGD:1601501 NCBI chr10:61,456,144...61,577,412
Ensembl chr10:61,456,145...61,577,412
JBrowse link
G Pex5 peroxisomal biogenesis factor 5 ISO MGI:2154454 (MGI:1096198|PMID:9288097) RGD PMID:9288097 MGI:1096198 NCBI chr 4:156,983,914...157,009,675
Ensembl chr 4:156,983,915...157,009,674
JBrowse link
G RGD1563888 similar to DNA segment, Chr 16, ERATO Doi 472, expressed ISO (MGI:5908509|PMID:27404227) RGD PMID:27404227 MGI:5908509 NCBI chr11:17,073,296...17,120,235
Ensembl chr11:17,076,980...17,130,120
JBrowse link
G Sin3a SIN3 transcription regulator family member A ISO (MGI:6152283|PMID:27399968) RGD PMID:27399968 MGI:6152283 NCBI chr 8:61,748,590...61,803,314
Ensembl chr 8:61,762,768...61,803,099
JBrowse link
G Tox thymocyte selection-associated high mobility group box ISO (MGI:5632052|PMID:25527292) RGD PMID:25527292 MGI:5632052 NCBI chr 5:19,892,698...20,189,721
Ensembl chr 5:19,892,698...20,189,721
JBrowse link
G Zfp335 zinc finger protein 335 IEA
ISO
GO_REF:0000107
MGI:5470136|MGI:95387 (MGI:5468205|PMID:23178126)
Ensembl
RGD
PMID:23178126 GO_REF:0000107 MGI:5468205 NCBI chr 3:161,357,201...161,378,073
Ensembl chr 3:161,357,278...161,376,119
JBrowse link
Cajal-Retzius cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Psen1 presenilin 1 ISO MGI:2149116 (MGI:3603707|PMID:15548218) RGD PMID:15548218 MGI:3603707 NCBI chr 6:107,169,514...107,221,000
Ensembl chr 6:107,169,528...107,216,798
JBrowse link
cerebral cortex GABAergic interneuron development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rac1 Rac family small GTPase 1 ISO MGI:2180784 (MGI:5569596|PMID:23258346) RGD PMID:23258346 MGI:5569596 NCBI chr12:13,090,316...13,111,841
Ensembl chr12:13,090,172...13,111,873
JBrowse link
G Rac3 Rac family small GTPase 3 ISO MGI:97845 (MGI:5569596|PMID:23258346) RGD PMID:23258346 MGI:5569596 NCBI chr10:109,903,920...109,906,596
Ensembl chr10:109,904,259...109,906,232
JBrowse link
cerebral cortex GABAergic interneuron differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 ISO (PMID:12050665) RGD PMID:12050665 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
G Dlx1 distal-less homeobox 1 ISO MGI:94902 (MGI:3574146|PMID:15028753) RGD PMID:15028753 MGI:3574146 NCBI chr 3:58,164,931...58,169,521
Ensembl chr 3:58,164,931...58,169,521
JBrowse link
G Dlx2 distal-less homeobox 2 ISO MGI:94901 (MGI:3574146|PMID:15028753) RGD PMID:15028753 MGI:3574146 NCBI chr 3:58,180,088...58,181,971
Ensembl chr 3:58,180,088...58,181,971
JBrowse link
G Nkx2-1 NK2 homeobox 1 IEA
ISO
GO_REF:0000107
MGI:1857494|MGI:3653645 (MGI:3574146|PMID:15028753), (MGI:3834782|PMID:18786356)
Ensembl
RGD
PMID:15028753 PMID:18786356 GO_REF:0000107 MGI:3574146 MGI:3834782 NCBI chr 6:77,418,096...77,423,383
Ensembl chr 6:77,418,096...77,421,286
JBrowse link
cerebral cortex GABAergic interneuron fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlx1 distal-less homeobox 1 IEA
ISO
GO_REF:0000107
MGI:94902 (MGI:3775335|PMID:17678855)
Ensembl
RGD
PMID:17678855 GO_REF:0000107 MGI:3775335 NCBI chr 3:58,164,931...58,169,521
Ensembl chr 3:58,164,931...58,169,521
JBrowse link
G Dlx2 distal-less homeobox 2 IEA
ISO
GO_REF:0000107
MGI:94901 (MGI:3775335|PMID:17678855)
Ensembl
RGD
PMID:17678855 GO_REF:0000107 MGI:3775335 NCBI chr 3:58,180,088...58,181,971
Ensembl chr 3:58,180,088...58,181,971
JBrowse link
cerebral cortex GABAergic interneuron migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arx aristaless related homeobox IEA
ISO
GO_REF:0000107
MGI:2679972 (MGI:3709215|PMID:17460091)
Ensembl
RGD
PMID:17460091 GO_REF:0000107 MGI:3709215 NCBI chr  X:62,363,757...62,376,139
Ensembl chr  X:62,363,757...62,376,143
JBrowse link
G Cntn2 contactin 2 IEA
ISO
GO_REF:0000107
(MGI:2155629|PMID:11714688)
Ensembl
RGD
PMID:11714688 GO_REF:0000107 MGI:2155629 NCBI chr13:49,280,913...49,314,061
Ensembl chr13:49,285,310...49,313,940
JBrowse link
G Drd1 dopamine receptor D1 IEA
ISO
GO_REF:0000107
MGI:1857875 (MGI:3709536|PMID:17409246)
Ensembl
RGD
PMID:17409246 GO_REF:0000107 MGI:3709536 NCBI chr17:11,099,736...11,104,352
Ensembl chr17:11,101,306...11,103,541
JBrowse link
G Drd2 dopamine receptor D2 ISO MGI:1857875 (MGI:3709536|PMID:17409246) RGD PMID:17409246 MGI:3709536 NCBI chr 8:53,678,777...53,743,643
Ensembl chr 8:53,678,777...53,743,642
JBrowse link
G Fezf2 Fez family zinc finger 2 ISO MGI:3046867 (MGI:5140686|PMID:21338885) RGD PMID:21338885 MGI:5140686 NCBI chr15:12,825,333...12,831,496
Ensembl chr15:12,827,707...12,831,496
JBrowse link
G Lhx6 LIM homeobox 6 ISO MGI:3702518 (MGI:3702257|PMID:17376969) RGD PMID:17376969 MGI:3702257 NCBI chr 3:15,409,349...15,433,504
Ensembl chr 3:15,411,939...15,433,252
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20045
    developmental process 6824
      anatomical structure development 6290
        forebrain development 508
          cerebral cortex neuron differentiation 29
            Cajal-Retzius cell differentiation 1
            Meynert cell differentiation + 0
            cerebral cortex GABAergic interneuron differentiation + 12
            hippocampal interneuron differentiation 0
Path 2
Term Annotations click to browse term
  biological_process 20045
    developmental process 6824
      anatomical structure development 6290
        multicellular organism development 5766
          system development 5298
            nervous system development 2729
              neurogenesis 1941
                generation of neurons 1785
                  neuron differentiation 1620
                    central nervous system neuron differentiation 242
                      cerebral cortex neuron differentiation 29
                        Cajal-Retzius cell differentiation 1
                        Meynert cell differentiation + 0
                        cerebral cortex GABAergic interneuron differentiation + 12
                        hippocampal interneuron differentiation 0
paths to the root