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ONTOLOGY REPORT - ANNOTATIONS


Term:forebrain generation of neurons
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Accession:GO:0021872 term browser browse the term
Definition:The process in which nerve cells are generated in the forebrain. This includes the production of neuroblasts from and their differentiation into neurons.
Synonyms:exact_synonym: generation of neurons in forebrain


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forebrain generation of neurons term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 ISO MGI:MGI:2156191 (MGI:MGI:2686791|PMID:14715945) RGD PMID:14715945 MGI:MGI:2686791 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 ISO MGI:MGI:2151350 (MGI:MGI:1100805|PMID:9394001) RGD PMID:9394001 MGI:MGI:1100805 NCBI chr20:47,286,843...47,306,318
Ensembl chr20:47,288,137...47,306,318
JBrowse link
chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slit1 slit guidance ligand 1 NOT ISO (PMID:11748139) RGD PMID:11748139 NCBI chr 1:260,843,481...260,992,366
Ensembl chr 1:260,843,483...260,992,366
JBrowse link
G Slit2 slit guidance ligand 2 NOT ISO (PMID:11748139) RGD PMID:11748139 NCBI chr14:66,831,848...67,171,491
Ensembl chr14:66,831,848...67,170,361
JBrowse link
G Slit3 slit guidance ligand 3 NOT ISO (PMID:11748139) RGD PMID:11748139 NCBI chr10:19,924,200...20,517,918
Ensembl chr10:20,320,878...20,518,518
JBrowse link
chemorepulsion involved in postnatal olfactory bulb interneuron migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Robo1 roundabout guidance receptor 1 IEA
ISO
GO_REF:0000107
(PMID:15207848)
Ensembl
RGD
PMID:15207848 GO_REF:0000107 NCBI chr11:9,079,291...10,146,302
Ensembl chr11:9,642,365...10,143,317
JBrowse link
G Slit2 slit guidance ligand 2 IEA
ISO
GO_REF:0000107
(PMID:15207848)
Ensembl
RGD
PMID:15207848 GO_REF:0000107 NCBI chr14:66,831,848...67,171,491
Ensembl chr14:66,831,848...67,170,361
JBrowse link
commitment of neuronal cell to specific neuron type in forebrain term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 ISO MGI:MGI:1857470 (MGI:MGI:5439194|PMID:22991444) RGD PMID:22991444 MGI:MGI:5439194 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
G Bcl11b BAF chromatin remodeling complex subunit BCL11B ISO MGI:MGI:2679336 (MGI:MGI:5464968|PMID:23144223) RGD PMID:23144223 MGI:MGI:5464968 NCBI chr 6:131,834,097...131,927,251
Ensembl chr 6:131,834,097...131,926,272
JBrowse link
G Fezf2 Fez family zinc finger 2 ISO MGI:MGI:2679336|MGI:MGI:3046867|MGI:MGI:3525887 (MGI:MGI:5140686|PMID:21338885), (MGI:MGI:5464968|PMID:23144223) RGD PMID:21338885, PMID:23144223 MGI:MGI:5140686, MGI:MGI:5464968 NCBI chr15:12,825,333...12,831,496
Ensembl chr15:12,827,707...12,831,496
JBrowse link
G Gata2 GATA binding protein 2 ISO MGI:MGI:4818492 (MGI:MGI:5439194|PMID:22991444) RGD PMID:22991444 MGI:MGI:5439194 NCBI chr 4:120,129,028...120,142,490
Ensembl chr 4:120,133,713...120,142,488
JBrowse link
G Pax6 paired box 6 ISO
IEA
MGI:MGI:1856158 (MGI:MGI:1928687|PMID:11124115)
GO_REF:0000107
RGD
Ensembl
PMID:11124115 GO_REF:0000107, MGI:MGI:1928687 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Satb2 SATB homeobox 2 ISO MGI:MGI:107404|MGI:MGI:1859823|MGI:MGI:1929913|MGI:MGI:3692768 (MGI:MGI:5464968|PMID:23144223) RGD PMID:23144223 MGI:MGI:5464968 NCBI chr 9:63,456,877...63,642,193
Ensembl chr 9:63,456,783...63,641,400
JBrowse link
G Tbr1 T-box brain transcription factor 1 ISO
IBA
MGI:MGI:2679336 (MGI:MGI:5464968|PMID:23144223)
PMID:21873635
RGD PMID:23144223, PMID:21873635 MGI:MGI:5464968, RGD:13792537 NCBI chr 3:47,677,720...47,685,902
Ensembl chr 3:47,677,720...47,685,902
JBrowse link
embryonic olfactory bulb interneuron precursor migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arx aristaless related homeobox ISO
IEA
MGI:MGI:2429693 (MGI:MGI:3574008|PMID:15677725)
GO_REF:0000107
RGD
Ensembl
PMID:15677725 GO_REF:0000107, MGI:MGI:3574008 NCBI chr  X:62,363,757...62,376,139
Ensembl chr  X:62,363,757...62,376,143
JBrowse link
G Rac1 Rac family small GTPase 1 ISO MGI:MGI:1932522|MGI:MGI:2663662 (MGI:MGI:3709518|PMID:17409253) RGD PMID:17409253 MGI:MGI:3709518 NCBI chr12:13,090,316...13,111,841
Ensembl chr12:13,090,172...13,111,873
JBrowse link
forebrain neuroblast division term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aspm assembly factor for spindle microtubules ISO (MGI:MGI:3654739|PMID:16798874) RGD PMID:16798874 MGI:MGI:3654739 NCBI chr13:56,546,021...56,591,793
Ensembl chr13:56,546,021...56,591,793
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 ISO
IEA
MGI:MGI:1298218 (MGI:MGI:2686791|PMID:14715945)
GO_REF:0000107
RGD
Ensembl
PMID:14715945 GO_REF:0000107, MGI:MGI:2686791 NCBI chr 2:236,232,115...236,345,061
Ensembl chr 2:236,233,239...236,345,056
JBrowse link
forebrain neuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 IMP induction of dopaminergic neurons in the rostral forebrain RGD PMID:9630220 RGD:2289424 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
G Gbx2 gastrulation brain homeobox 2 ISO MGI:MGI:1857634 (MGI:MGI:4849329|PMID:21048141) RGD PMID:21048141 MGI:MGI:4849329 NCBI chr 9:97,063,265...97,065,855
Ensembl chr 9:97,063,728...97,065,817
JBrowse link
G Gnaq G protein subunit alpha q ISO
IEA
MGI:MGI:2151661 (MGI:MGI:3054490|PMID:15340067)
GO_REF:0000107
RGD
Ensembl
PMID:15340067 GO_REF:0000107, MGI:MGI:3054490 NCBI chr 1:233,382,778...233,622,584
Ensembl chr 1:233,382,708...233,622,786
JBrowse link
G Lhx6 LIM homeobox 6 ISO
IBA
MGI:MGI:1096343 (MGI:MGI:3588012|PMID:15217369)
PMID:21873635
RGD PMID:15217369, PMID:21873635 MGI:MGI:3588012, RGD:13792537 NCBI chr 3:15,409,349...15,433,504
Ensembl chr 3:15,411,939...15,433,252
JBrowse link
G Lhx8 LIM homeobox 8 ISO
IBA
MGI:MGI:1306803 (MGI:MGI:3588012|PMID:15217369)
PMID:21873635
RGD PMID:15217369, PMID:21873635 MGI:MGI:3588012, RGD:13792537 NCBI chr 2:260,572,205...260,598,744
Ensembl chr 2:260,574,190...260,596,777
JBrowse link
G Rapgef2 Rap guanine nucleotide exchange factor 2 ISO
ISS
(MGI:MGI:3848551|PMID:19453629)
GO_REF:0000024
RGD
UniProt
PMID:19453629 GO_REF:0000024, MGI:MGI:3848551 NCBI chr 2:177,836,191...178,057,378
Ensembl chr 2:177,836,202...178,057,157
JBrowse link
G Sox1 SRY-box transcription factor 1 ISO MGI:MGI:2137412 (MGI:MGI:3583071|PMID:15882093) RGD PMID:15882093 MGI:MGI:3583071
G Tfap2a transcription factor AP-2 alpha ISO MGI:MGI:1888387 (MGI:MGI:1855759|PMID:10803593) RGD PMID:10803593 MGI:MGI:1855759 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
forebrain neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 IDA RGD PMID:17936272 RGD:2314144 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
G Csf1r colony stimulating factor 1 receptor ISO
IEA
(MGI:MGI:5430247|PMID:22542597)
GO_REF:0000107
RGD
Ensembl
PMID:22542597 GO_REF:0000107, MGI:MGI:5430247 NCBI chr18:56,414,493...56,458,300
Ensembl chr18:56,414,488...56,458,300
JBrowse link
G Dlx1 distal-less homeobox 1 ISO MGI:MGI:94902 (MGI:MGI:1928567|PMID:11163262) RGD PMID:11163262 MGI:MGI:1928567 NCBI chr 3:58,164,931...58,169,521
Ensembl chr 3:58,164,931...58,169,521
JBrowse link
G Dlx2 distal-less homeobox 2 ISO MGI:MGI:94901 (MGI:MGI:1928567|PMID:11163262) RGD PMID:11163262 MGI:MGI:1928567 NCBI chr 3:58,180,088...58,181,971
Ensembl chr 3:58,180,088...58,181,971
JBrowse link
G Lhx5 LIM homeobox 5 ISO MGI:MGI:2152620 (MGI:MGI:1337234|PMID:10325223) RGD PMID:10325223 MGI:MGI:1337234 NCBI chr12:41,663,000...41,671,437
Ensembl chr12:41,663,000...41,671,437
JBrowse link
G Lhx8 LIM homeobox 8 ISO MGI:MGI:3603531 (MGI:MGI:3603110|PMID:15978004) RGD PMID:15978004 MGI:MGI:3603110 NCBI chr 2:260,572,205...260,598,744
Ensembl chr 2:260,574,190...260,596,777
JBrowse link
G Nkx2-1 NK2 homeobox 1 ISO MGI:MGI:1857494 (MGI:MGI:1928567|PMID:11163262) RGD PMID:11163262 MGI:MGI:1928567 NCBI chr 6:77,418,096...77,423,383
Ensembl chr 6:77,418,096...77,421,286
JBrowse link
G Otp orthopedia homeobox ISO MGI:MGI:2180541 (MGI:MGI:3713174|PMID:17481897) RGD PMID:17481897 MGI:MGI:3713174 NCBI chr 2:24,546,393...24,554,953
Ensembl chr 2:24,546,536...24,554,683
JBrowse link
G Phlda1 pleckstrin homology-like domain, family A, member 1 IEP RGD PMID:10428057 RGD:70034 NCBI chr 7:54,247,460...54,249,664
Ensembl chr 7:54,247,460...54,249,664
JBrowse link
G Pou3f4 POU class 3 homeobox 4 ISO (MGI:MGI:1329221|PMID:9889200) RGD PMID:9889200 MGI:MGI:1329221 NCBI chr  X:82,143,789...82,145,066
Ensembl chr  X:82,143,789...82,145,066
JBrowse link
G Sox1 SRY-box transcription factor 1 ISO MGI:MGI:2137412 (MGI:MGI:3583071|PMID:15882093) RGD PMID:15882093 MGI:MGI:3583071
G Sox2 SRY-box transcription factor 2 ISO MGI:MGI:2181440|MGI:MGI:3052123 (MGI:MGI:3051708|PMID:15240551) RGD PMID:15240551 MGI:MGI:3051708 NCBI chr 2:121,165,137...121,167,545
Ensembl chr 2:121,165,137...121,167,545
JBrowse link
forebrain neuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx6 LIM homeobox 6 ISO MGI:MGI:108067 (MGI:MGI:3794908|PMID:18339674) RGD PMID:18339674 MGI:MGI:3794908 NCBI chr 3:15,409,349...15,433,504
Ensembl chr 3:15,411,939...15,433,252
JBrowse link
G Nkx2-1 NK2 homeobox 1 ISO
IEA
MGI:MGI:1306803|MGI:MGI:1857494 (MGI:MGI:3794908|PMID:18339674)
GO_REF:0000107
RGD
Ensembl
PMID:18339674 GO_REF:0000107, MGI:MGI:3794908 NCBI chr 6:77,418,096...77,423,383
Ensembl chr 6:77,418,096...77,421,286
JBrowse link
G Tfap2c transcription factor AP-2 gamma ISO MGI:MGI:2176695 (MGI:MGI:4397655|PMID:19749747) RGD PMID:19749747 MGI:MGI:4397655 NCBI chr 3:170,550,314...170,558,197
Ensembl chr 3:170,550,314...170,558,194
JBrowse link
forebrain radial glial cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI family zinc finger 3 ISO MGI:MGI:1856282 (MGI:MGI:1097510|PMID:9232833) RGD PMID:9232833 MGI:MGI:1097510 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Hes1 hes family bHLH transcription factor 1 IDA PMID:11399758 UniProt PMID:11399758 RGD:8554692 NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248
JBrowse link
G Hes5 hes family bHLH transcription factor 5 IDA PMID:11399758 UniProt PMID:11399758 RGD:8554692 NCBI chr 5:172,364,421...172,365,188
Ensembl chr 5:172,364,421...172,365,188
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 ISO
IEA
MGI:MGI:1298218 (MGI:MGI:2686791|PMID:14715945)
GO_REF:0000107
RGD
Ensembl
PMID:14715945 GO_REF:0000107, MGI:MGI:2686791 NCBI chr 2:236,232,115...236,345,061
Ensembl chr 2:236,233,239...236,345,056
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO MGI:MGI:96770 (MGI:MGI:2686791|PMID:14715945) RGD PMID:14715945 MGI:MGI:2686791 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Mettl14 methyltransferase like 14 ISO (MGI:MGI:5927282|PMID:28965759) RGD PMID:28965759 MGI:MGI:5927282 NCBI chr 2:227,566,811...227,583,047
Ensembl chr 2:227,566,815...227,582,895
JBrowse link
G Mettl3 methyltransferase-like 3 ISO (MGI:MGI:5927282|PMID:28965759) RGD PMID:28965759 MGI:MGI:5927282 NCBI chr15:28,710,299...28,721,491
Ensembl chr15:28,710,300...28,721,127
JBrowse link
G Rhoa ras homolog family member A ISO MGI:MGI:4950374 (MGI:MGI:5316314|PMID:22405202) RGD PMID:22405202 MGI:MGI:5316314 NCBI chr 8:117,082,440...117,116,244
Ensembl chr 8:117,106,576...117,116,167
JBrowse link
gonadotrophin-releasing hormone neuronal migration to the hypothalamus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 ISO (MGI:MGI:4850173|PMID:21059704) RGD PMID:21059704 MGI:MGI:4850173 NCBI chr19:61,332,351...61,486,166
Ensembl chr19:61,332,351...61,485,858
JBrowse link
G Nrp2 neuropilin 2 ISO (MGI:MGI:4850173|PMID:21059704) RGD PMID:21059704 MGI:MGI:4850173 NCBI chr 9:69,496,875...69,609,802
Ensembl chr 9:69,497,121...69,612,087
JBrowse link
G Sema3a semaphorin 3A ISO (MGI:MGI:4850173|PMID:21059704) RGD PMID:21059704 MGI:MGI:4850173 NCBI chr 4:18,170,375...18,545,190
Ensembl chr 4:18,178,656...18,396,035
JBrowse link
hypothalamus gonadotrophin-releasing hormone neuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ubb ubiquitin B ISO MGI:MGI:3774112 (MGI:MGI:3776935|PMID:18299572) RGD PMID:18299572 MGI:MGI:3776935 NCBI chr10:48,880,231...48,881,896
Ensembl chr10:48,881,049...48,881,881
JBrowse link
motogenic signaling involved in postnatal olfactory bulb interneuron migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr1 Fibroblast growth factor receptor 1 IMP RGD PMID:20083104 RGD:2325172 NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449
JBrowse link
negative regulation of forebrain neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B2m beta-2 microglobulin ISO (PMID:26147761)
(MGI:MGI:5708430|PMID:26147761)
RGD PMID:26147761 MGI:MGI:5708430 NCBI chr 3:114,087,287...114,093,311
Ensembl chr 3:114,087,287...114,093,309
JBrowse link
G Hes1 hes family bHLH transcription factor 1 IDA PMID:11399758 UniProt PMID:11399758 RGD:8554692 NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248
JBrowse link
G Hes5 hes family bHLH transcription factor 5 IDA PMID:11399758 UniProt PMID:11399758 RGD:8554692 NCBI chr 5:172,364,421...172,365,188
Ensembl chr 5:172,364,421...172,365,188
JBrowse link
G Ptger3 prostaglandin E receptor 3 IMP RGD PMID:19555672 RGD:10043320 NCBI chr 2:263,895,093...263,979,682
Ensembl chr 2:263,895,241...263,979,698
JBrowse link
olfactory bulb interneuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf5 activating transcription factor 5 ISO
IEA
MGI:MGI:5467393 (MGI:MGI:5461281|PMID:23090999)
GO_REF:0000107
RGD
Ensembl
PMID:23090999 GO_REF:0000107, MGI:MGI:5461281 NCBI chr 1:100,807,821...100,812,410
Ensembl chr 1:100,808,241...100,810,522
JBrowse link
G Robo1 roundabout guidance receptor 1 ISO UniProtKB:Q7TPD3 (MGI:MGI:3702250|PMID:17360927) RGD PMID:17360927 MGI:MGI:3702250 NCBI chr11:9,079,291...10,146,302
Ensembl chr11:9,642,365...10,143,317
JBrowse link
G Robo2 roundabout guidance receptor 2 ISO (MGI:MGI:3702250|PMID:17360927) RGD PMID:17360927 MGI:MGI:3702250 NCBI chr11:11,062,866...12,618,793
Ensembl chr11:11,062,790...11,585,765
JBrowse link
G Sall3 spalt-like transcription factor 3 ISO MGI:MGI:3052730 (MGI:MGI:3798379|PMID:18260139) RGD PMID:18260139 MGI:MGI:3798379 NCBI chr18:77,572,200...77,591,710
Ensembl chr18:77,573,702...77,579,969
JBrowse link
G Wnt5a Wnt family member 5A IEA
ISO
GO_REF:0000107
(MGI:MGI:5285122|PMID:21539518)
Ensembl
RGD
PMID:21539518 GO_REF:0000107, MGI:MGI:5285122 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
olfactory bulb interneuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf5 activating transcription factor 5 ISO MGI:MGI:5467393 (MGI:MGI:5461281|PMID:23090999) RGD PMID:23090999 MGI:MGI:5461281 NCBI chr 1:100,807,821...100,812,410
Ensembl chr 1:100,808,241...100,810,522
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO (MGI:MGI:3778596|PMID:18184563) RGD PMID:18184563 MGI:MGI:3778596 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Dlx5 distal-less homeobox 5 ISO
IEA
MGI:MGI:2180475 (MGI:MGI:5774924|PMID:25937343)
GO_REF:0000107
RGD
Ensembl
PMID:25937343 GO_REF:0000107, MGI:MGI:5774924 NCBI chr 4:32,387,741...32,392,085
Ensembl chr 4:32,387,741...32,392,007
JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:3527369|PMID:15543145)
Ensembl
UniProt
RGD
PMID:15543145 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3527369 NCBI chr 9:75,021,790...76,178,936
Ensembl chr 9:75,021,790...75,528,644
JBrowse link
G Gsx2 GS homeobox 2 ISO MGI:MGI:2150162 (MGI:MGI:1926244|PMID:11060228) RGD PMID:11060228 MGI:MGI:1926244 NCBI chr14:35,650,985...35,652,709
Ensembl chr14:35,650,985...35,652,709
JBrowse link
G Mir200a microRNA 200a ISO (MGI:MGI:5774924|PMID:25937343) RGD PMID:25937343 MGI:MGI:5774924 NCBI chr 5:173,489,366...173,489,454 JBrowse link
G Mir200b microRNA 200b ISO (MGI:MGI:5774924|PMID:25937343) RGD PMID:25937343 MGI:MGI:5774924 NCBI chr 5:173,490,144...173,490,238
Ensembl chr 5:173,490,144...173,490,238
JBrowse link
G Mir200c microRNA 200c ISO (MGI:MGI:5774924|PMID:25937343) RGD PMID:25937343 MGI:MGI:5774924 NCBI chr 4:157,236,786...157,236,854 JBrowse link
G Mir9-3 microRNA 9-3 ISO (MGI:MGI:5774924|PMID:25937343) RGD PMID:25937343 MGI:MGI:5774924 NCBI chr 1:141,229,353...141,229,442 JBrowse link
G Sall1 spalt-like transcription factor 1 ISO (MGI:MGI:4420747|PMID:18024993) RGD PMID:18024993 MGI:MGI:4420747 NCBI chr19:23,387,737...23,405,025
Ensembl chr19:23,389,375...23,405,039
JBrowse link
G Uncx UNC homeobox ISO
IEA
MGI:MGI:1928812 (MGI:MGI:4949589|PMID:20692344)
GO_REF:0000107
RGD
Ensembl
PMID:20692344 GO_REF:0000107, MGI:MGI:4949589 NCBI chr12:17,182,158...17,186,679
Ensembl chr12:17,182,163...17,186,679
JBrowse link
positive regulation of forebrain neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prox1 prospero homeobox 1 ISO (MGI:MGI:4849596|PMID:20808958) RGD PMID:20808958 MGI:MGI:4849596 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
pyramidal neuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg7 autophagy related 7 ISO MGI:MGI:2386545|MGI:MGI:3587769 (MGI:MGI:3630371|PMID:16625205) RGD PMID:16625205 MGI:MGI:3630371 NCBI chr 4:146,570,113...146,777,093
Ensembl chr 4:146,598,413...146,777,124
JBrowse link
G Atp7a ATPase copper transporting alpha ISO MGI:MGI:1856466 (MGI:MGI:71790|PMID:2473662) RGD PMID:2473662 MGI:MGI:71790 NCBI chr  X:77,076,085...77,193,644
Ensembl chr  X:77,076,106...77,193,644
JBrowse link
G Dclk2 doublecortin-like kinase 2 ISO MGI:MGI:1277171 (MGI:MGI:3844387|PMID:19342486) RGD PMID:19342486 MGI:MGI:3844387 NCBI chr 2:186,116,624...186,245,937
Ensembl chr 2:186,116,624...186,245,771
JBrowse link
G Dcx doublecortin ISO
IEA
MGI:MGI:1918012 (MGI:MGI:3844387|PMID:19342486)
GO_REF:0000107
RGD
Ensembl
PMID:19342486 GO_REF:0000107, MGI:MGI:3844387 NCBI chr  X:115,098,675...115,175,515
Ensembl chr  X:115,098,675...115,175,299
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO (MGI:MGI:4452541|PMID:20410112) RGD PMID:20410112 MGI:MGI:4452541 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Ogdh oxoglutarate dehydrogenase ISO (PMID:16901643) RGD PMID:16901643 NCBI chr14:86,414,924...86,481,903
Ensembl chr14:86,414,949...86,613,327
JBrowse link
G Plxna3 plexin A3 ISO MGI:MGI:2386961 (MGI:MGI:2152659|PMID:11683995) RGD PMID:11683995 MGI:MGI:2152659 NCBI chr  X:156,363,400...156,379,433
Ensembl chr  X:156,363,405...156,379,189
JBrowse link
G Scyl2 SCY1 like pseudokinase 2 IEA
ISO
GO_REF:0000107
(MGI:MGI:5694521|PMID:26203146)
Ensembl
RGD
PMID:26203146 GO_REF:0000107, MGI:MGI:5694521 NCBI chr 7:30,291,087...30,344,464
Ensembl chr 7:30,291,087...30,344,445
JBrowse link
G Slc4a10 solute carrier family 4 member 10 ISO MGI:MGI:3774019 (MGI:MGI:3772751|PMID:18165320) RGD PMID:18165320 MGI:MGI:3772751 NCBI chr 3:47,995,812...48,287,897
Ensembl chr 3:47,995,959...48,287,910
JBrowse link
G Uqcrq ubiquinol-cytochrome c reductase, complex III subunit VII ISO (PMID:16901643) RGD PMID:16901643 NCBI chr10:38,779,132...38,782,489
Ensembl chr10:38,779,132...38,782,419
JBrowse link
pyramidal neuron migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Disc1 DISC1 scaffold protein IMP RGD PMID:16299498 RGD:5509783 NCBI chr19:57,818,838...58,069,992
Ensembl chr19:57,820,260...58,066,152
JBrowse link
G Foxg1 forkhead box G1 ISO (MGI:MGI:5440366|PMID:22726835) RGD PMID:22726835 MGI:MGI:5440366 NCBI chr 6:69,971,227...69,974,037
Ensembl chr 6:69,971,227...69,974,037
JBrowse link
G Zmiz1 zinc finger, MIZ-type containing 1 ISO (PMID:30639322) RGD PMID:30639322 NCBI chr16:1,749,191...1,954,633
Ensembl chr16:1,749,191...1,954,614
JBrowse link
regulation of forebrain neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata2 GATA binding protein 2 ISO MGI:MGI:4818492 (MGI:MGI:5439194|PMID:22991444) RGD PMID:22991444 MGI:MGI:5439194 NCBI chr 4:120,129,028...120,142,490
Ensembl chr 4:120,133,713...120,142,488
JBrowse link
regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlx1 distal-less homeobox 1 ISO
IEA
MGI:MGI:94902 (MGI:MGI:3775335|PMID:17678855)
GO_REF:0000107
RGD
Ensembl
PMID:17678855 GO_REF:0000107, MGI:MGI:3775335 NCBI chr 3:58,164,931...58,169,521
Ensembl chr 3:58,164,931...58,169,521
JBrowse link
G Dlx2 distal-less homeobox 2 ISO
IEA
MGI:MGI:94901 (MGI:MGI:3775335|PMID:17678855)
GO_REF:0000107
RGD
Ensembl
PMID:17678855 GO_REF:0000107, MGI:MGI:3775335 NCBI chr 3:58,180,088...58,181,971
Ensembl chr 3:58,180,088...58,181,971
JBrowse link
G Smarcc2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 ISO MGI:MGI:5504429 (MGI:MGI:5490928|PMID:23643363) RGD PMID:23643363 MGI:MGI:5490928 NCBI chr 7:2,875,898...2,905,463
Ensembl chr 7:2,875,909...2,904,453
JBrowse link
striatal medium spiny neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11b BAF chromatin remodeling complex subunit BCL11B ISO MGI:MGI:2663971 (MGI:MGI:3773576|PMID:18199763) RGD PMID:18199763 MGI:MGI:3773576 NCBI chr 6:131,834,097...131,927,251
Ensembl chr 6:131,834,097...131,926,272
JBrowse link
G Inhba inhibin subunit beta A ISO (PMID:25804741) RGD PMID:25804741 NCBI chr17:51,894,869...51,919,998
Ensembl chr17:51,898,217...51,912,496
JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 ISO
IEA
ISS
(MGI:MGI:4948759|PMID:21423165)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
BHF-UCL
PMID:21423165 GO_REF:0000024, GO_REF:0000107, MGI:MGI:4948759 NCBI chr 7:130,474,278...130,534,679
Ensembl chr 7:130,474,279...130,534,679
JBrowse link
G Zswim6 zinc finger, SWIM-type containing 6 ISO (MGI:MGI:6140923|PMID:28433741) RGD PMID:28433741 MGI:MGI:6140923 NCBI chr 2:38,978,042...39,042,886
Ensembl chr 2:38,979,865...39,007,976
JBrowse link
ventricular zone neuroblast division term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dct dopachrome tautomerase ISO (MGI:MGI:3701732|PMID:16857183) RGD PMID:16857183 MGI:MGI:3701732 NCBI chr15:103,208,174...103,245,033
Ensembl chr15:103,208,258...103,244,494
JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 IEA
ISO
GO_REF:0000107
(MGI:MGI:4452541|PMID:20410112)
Ensembl
RGD
PMID:20410112 GO_REF:0000107, MGI:MGI:4452541 NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO (MGI:MGI:4452541|PMID:20410112) RGD PMID:20410112 MGI:MGI:4452541 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
Wnt signaling pathway involved in forebrain neuroblast division term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 ISO MGI:MGI:2156191|MGI:MGI:96770 (MGI:MGI:2686791|PMID:14715945), (MGI:MGI:3689135|PMID:16920270) RGD PMID:14715945, PMID:16920270 MGI:MGI:2686791, MGI:MGI:3689135 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Wnt3a Wnt family member 3A ISO MGI:MGI:1857489 (MGI:MGI:1351292|PMID:10631167) RGD PMID:10631167 MGI:MGI:1351292 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      anatomical structure development 6269
        forebrain development 507
          forebrain generation of neurons 82
            forebrain neuroblast differentiation + 0
            forebrain neuroblast division + 7
            forebrain neuron differentiation + 72
            forebrain radial glial cell differentiation + 8
Path 2
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      anatomical structure development 6269
        multicellular organism development 5744
          system development 5280
            nervous system development 2722
              central nervous system development 1262
                brain development 966
                  forebrain development 507
                    forebrain generation of neurons 82
                      forebrain neuroblast differentiation + 0
                      forebrain neuroblast division + 7
                      forebrain neuron differentiation + 72
                      forebrain radial glial cell differentiation + 8
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.