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ONTOLOGY REPORT - ANNOTATIONS


Term:layer formation in cerebral cortex
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Accession:GO:0021819 term browser browse the term
Definition:The detachment of cells from radial glial fibers at the appropriate time when they cease to migrate and form distinct layer in the cerebral cortex.
Synonyms:related_synonym: cerebral cortex lamination



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layer formation in cerebral cortex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrg1 adhesion G protein-coupled receptor G1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:3796260|PMID:18509043)
UniProt
Ensembl
RGD
PMID:18509043 GO_REF:0000024 GO_REF:0000107 MGI:3796260 NCBI chr19:10,003,963...10,041,122
Ensembl chr19:10,003,975...10,041,108
JBrowse link
G Cdk5 cyclin-dependent kinase 5 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:1861809 (MGI:2149271|PMID:11517264)
GO_REF:0000107
RGD
Ensembl
PMID:11517264 GO_REF:0000107 MGI:2149271 NCBI chr 4:10,754,682...10,760,110
Ensembl chr 4:10,754,687...10,760,112
JBrowse link
G Cdk5r1 cyclin-dependent kinase 5 regulatory subunit 1 acts_upstream_of_or_within ISO MGI:1330828 (MGI:2149271|PMID:11517264) RGD PMID:11517264 MGI:2149271 NCBI chr10:65,484,266...65,485,467
Ensembl chr10:65,483,941...65,488,456
JBrowse link
G Cdk5r2 cyclin-dependent kinase 5 regulatory subunit 2 acts_upstream_of_or_within ISO MGI:101764 (MGI:2149271|PMID:11517264) RGD PMID:11517264 MGI:2149271 NCBI chr 9:76,416,251...76,417,719
Ensembl chr 9:76,416,062...76,418,344
JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in ISO (MGI:6229268|PMID:22235340) RGD PMID:22235340 MGI:6229268 NCBI chr 9:47,374,611...47,410,547
Ensembl chr 9:47,374,593...47,410,547
JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:2148567|MGI:3701617 (MGI:4454697|PMID:20503375)
GO_REF:0000107
RGD
Ensembl
PMID:20503375 GO_REF:0000107 MGI:4454697 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Dab2ip DAB2 interacting protein involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5463669|PMID:23056358)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:23056358 GO_REF:0000024 GO_REF:0000107 MGI:5463669 NCBI chr 3:18,915,290...19,086,282
Ensembl chr 3:18,915,290...19,086,280
JBrowse link
G Dcx doublecortin involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2387757 (MGI:3844387|PMID:19342486)
Ensembl
RGD
PMID:19342486 GO_REF:0000107 MGI:3844387 NCBI chr  X:107,430,767...107,573,612
Ensembl chr  X:107,430,767...107,507,476
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:2176173|MGI:3798847 (MGI:4949945|PMID:21525285) RGD PMID:21525285 MGI:4949945 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
JBrowse link
G Lrp8 LDL receptor related protein 8 acts_upstream_of_or_within ISO MGI:109520 (MGI:3769085|PMID:17330141) RGD PMID:17330141 MGI:3769085 NCBI chr 5:122,563,468...122,635,434
Ensembl chr 5:122,563,453...122,631,352
JBrowse link
G Mboat7 membrane bound O-acyltransferase domain containing 7 acts_upstream_of_or_within ISO MGI:5509338 (MGI:5507927|PMID:23097495) RGD PMID:23097495 MGI:5507927 NCBI chr 1:65,525,206...65,539,538
Ensembl chr 1:65,525,213...65,539,538
JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within ISO MGI:2151350 (MGI:3629819|PMID:15385616) RGD PMID:15385616 MGI:3629819 NCBI chr20:46,050,134...46,071,257
Ensembl chr20:46,050,414...46,073,949
JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 acts_upstream_of_or_within ISO MGI:1340044 (MGI:3769085|PMID:17330141) RGD PMID:17330141 MGI:3769085 NCBI chr10:59,533,042...59,591,808
Ensembl chr10:59,534,117...59,591,808
JBrowse link
G Reln reelin involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856398 (MGI:5319303|PMID:20847152)
Ensembl
RGD
PMID:20847152 GO_REF:0000107 MGI:5319303 NCBI chr 4:12,736,177...13,162,956
Ensembl chr 4:12,736,130...13,162,211
JBrowse link
G Socs7 suppressor of cytokine signaling 7 acts_upstream_of_or_within ISO MGI:5545789 (MGI:5545793|PMID:24210661) RGD PMID:24210661 MGI:5545793 NCBI chr10:82,352,159...82,388,829
Ensembl chr10:82,351,680...82,388,830
JBrowse link
negative regulation of cell motility involved in cerebral cortex radial glia guided migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmerb1 bMERB domain containing 1 acts_upstream_of_or_within ISO (MGI:5578117|PMID:25099998) RGD PMID:25099998 MGI:5578117 NCBI chr10:1,779,834...1,946,586
Ensembl chr10:1,779,835...1,946,575
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20350
    developmental process 7023
      anatomical structure formation involved in morphogenesis 1373
        layer formation in cerebral cortex 16
          extracellular matrix organization in marginal zone involved in cerebral cortex radial glia guided migration 0
          negative regulation of cell motility involved in cerebral cortex radial glia guided migration 1
          negative regulation of cell-glial cell adhesion involved in cerebral cortex lamination 0
Path 2
Term Annotations click to browse term
  biological_process 20350
    developmental process 7023
      anatomical structure development 6530
        multicellular organism development 5248
          system development 4527
            nervous system development 2784
              central nervous system development 1205
                brain development 903
                  forebrain development 551
                    telencephalon development 381
                      pallium development 269
                        cerebral cortex development 172
                          cerebral cortex cell migration 55
                            cerebral cortex radially oriented cell migration 40
                              cerebral cortex radial glia-guided migration 28
                                layer formation in cerebral cortex 16
                                  extracellular matrix organization in marginal zone involved in cerebral cortex radial glia guided migration 0
                                  negative regulation of cell motility involved in cerebral cortex radial glia guided migration 1
                                  negative regulation of cell-glial cell adhesion involved in cerebral cortex lamination 0
paths to the root