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ONTOLOGY REPORT - ANNOTATIONS

Term:olfactory bulb development
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Accession:GO:0021772 term browser browse the term
Definition:The progression of the olfactory bulb over time from its initial formation until its mature state. The olfactory bulb coordinates neuronal signaling involved in the perception of smell. It receives input from the sensory neurons and outputs to the olfactory cortex.


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olfactory bulb development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agtpbp1 ATP/GTP binding carboxypeptidase 1 involved_in ISO (MGI:2159417|PMID:11884758) RGD PMID:11884758 MGI:2159417 NCBI chr17:5,120,540...5,238,874
Ensembl chr17:5,120,609...5,238,869 		JBrowse link
G Ak1 adenylate kinase 1 IEP RGD PMID:9920788 RGD:632499 NCBI chr 3:15,912,431...15,923,045
Ensembl chr 3:15,912,485...15,923,041 		JBrowse link
G Ak3 adenylate kinase 3 IEP RGD PMID:9920788 RGD:632499 NCBI chr 1:226,737,472...226,764,647
Ensembl chr 1:226,739,318...226,764,625 		JBrowse link
G Arx aristaless related homeobox acts_upstream_of_or_within ISO MGI:2429693 (MGI:3574008|PMID:15677725) RGD PMID:15677725 MGI:3574008 NCBI chr  X:58,016,233...58,028,149
Ensembl chr  X:58,016,233...58,028,142 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within ISO MGI:3707678 (MGI:3843558|PMID:19279158) RGD PMID:19279158 MGI:3843558 NCBI chr 5:21,812,007...21,995,358
Ensembl chr 5:21,812,070...21,995,358 		JBrowse link
G Crtac1 cartilage acidic protein 1 acts_upstream_of_or_within ISO (MGI:5086019|PMID:21817055) RGD PMID:21817055 MGI:5086019 NCBI chr 1:241,091,679...241,233,677
Ensembl chr 1:241,078,864...241,233,421 		JBrowse link
G Csf1r colony stimulating factor 1 receptor involved_in IEA
ISO		 GO_REF:0000107
(MGI:5430247|PMID:22542597)		 Ensembl
RGD		 PMID:22542597 GO_REF:0000107 MGI:5430247 NCBI chr18:54,546,673...54,590,418
Ensembl chr18:54,546,659...54,590,415 		JBrowse link
G Dlx2 distal-less homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857828 (MGI:76977|PMID:7590232)		 Ensembl
RGD		 PMID:7590232 GO_REF:0000107 MGI:76977 NCBI chr 3:56,371,347...56,373,230
Ensembl chr 3:56,370,483...56,373,597 		JBrowse link
G Dpysl2 dihydropyrimidinase-like 2 IEP RGD PMID:14751288 RGD:2316247 NCBI chr15:41,005,551...41,111,724
Ensembl chr15:41,005,551...41,111,829 		JBrowse link
G Efna2 ephrin A2 IEP RGD PMID:12234653 RGD:634733 NCBI chr 7:9,515,635...9,528,071
Ensembl chr 7:9,516,429...9,527,061 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 IEP RGD PMID:18565716 RGD:13204724 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715 		JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within ISO MGI:3774027 (MGI:3846465|PMID:19435790) RGD PMID:19435790 MGI:3846465 NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO MGI:2176173|MGI:2682061 (MGI:2679928|PMID:14605369) RGD PMID:14605369 MGI:2679928 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Fezf1 Fez family zinc finger 1 acts_upstream_of_or_within ISO MGI:3626294 (MGI:3702790|PMID:16971467) RGD PMID:16971467 MGI:3702790 NCBI chr 4:51,762,751...51,766,078
Ensembl chr 4:51,762,751...51,766,078 		JBrowse link
G Fut1 fucosyltransferase 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3701717|PMID:16884711)		 UniProt
RGD		 PMID:16884711 GO_REF:0000024 MGI:3701717 NCBI chr 1:96,086,934...96,090,352
Ensembl chr 1:96,086,635...96,090,616 		JBrowse link
G Gsx2 GS homeobox 2 involved_in ISO MGI:4412067 (MGI:5913214|PMID:28814342) RGD PMID:28814342 MGI:5913214 NCBI chr14:33,123,799...33,126,151
Ensembl chr14:33,124,381...33,126,105 		JBrowse link
G Id2 inhibitor of DNA binding 2 acts_upstream_of_or_within ISO MGI:3830733 (MGI:3829299|PMID:19109490) RGD PMID:19109490 MGI:3829299 NCBI chr 6:41,740,556...41,742,393
Ensembl chr 6:41,728,946...41,744,400 		JBrowse link
G Kif14 kinesin family member 14 involved_in ISO (MGI:5485315|PMID:23308235), (MGI:5605219|PMID:24931760) RGD PMID:23308235 PMID:24931760 MGI:5485315 MGI:5605219 NCBI chr13:47,926,975...47,990,598
Ensembl chr13:47,927,044...47,989,164 		JBrowse link
G Lhx2 LIM homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:4399044 (MGI:4397621|PMID:19820705)		 Ensembl
RGD		 PMID:19820705 GO_REF:0000107 MGI:4397621 NCBI chr 3:22,113,619...22,143,909
Ensembl chr 3:22,126,007...22,143,908 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO (PMID:21168496) RGD PMID:21168496 NCBI chr 7:122,826,712...122,987,711
Ensembl chr 7:122,826,696...122,987,703 		JBrowse link
G Mecp2 methyl CpG binding protein 2 IEP RGD PMID:12605461 RGD:12790706 NCBI chr  X:151,781,177...151,844,687
Ensembl chr  X:151,789,930...151,844,689 		JBrowse link
G Nfix nuclear factor I X involved_in ISO MGI:3802571 (MGI:5796911|PMID:25331604) RGD PMID:25331604 MGI:5796911 NCBI chr19:23,355,388...23,450,360
Ensembl chr19:23,355,498...23,448,265 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within ISO MGI:2151350|MGI:2176490 (MGI:2151063|PMID:11997145), (MGI:3527227|PMID:12527005) RGD PMID:11997145 PMID:12527005 MGI:2151063 MGI:3527227 NCBI chr20:46,050,134...46,070,569
Ensembl chr20:46,050,414...46,073,949 		JBrowse link
G Pax6 paired box 6 IMP RGD PMID:14736749 RGD:8552333 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Pcnt pericentrin acts_upstream_of_or_within ISO MGI:3799303 (MGI:4438783|PMID:20096683) RGD PMID:20096683 MGI:4438783 NCBI chr20:12,190,597...12,278,723
Ensembl chr20:12,191,648...12,278,710 		JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within ISO MGI:3716208 (MGI:3716248|PMID:17558409) RGD PMID:17558409 MGI:3716248 NCBI chr19:15,692,189...15,785,083
Ensembl chr19:15,692,150...15,785,083 		JBrowse link
G Sall1 spalt-like transcription factor 1 acts_upstream_of_or_within ISO MGI:2388379 (MGI:4420747|PMID:18024993) RGD PMID:18024993 MGI:4420747 NCBI chr19:18,005,782...18,022,705
Ensembl chr19:18,007,503...18,022,705 		JBrowse link
G Sema3a semaphorin 3A involved_in ISO
ISS		 (PMID:22416012)
GO_REF:0000024		 RGD
UniProt		 PMID:22416012 GO_REF:0000024 NCBI chr 4:21,282,398...21,754,834
Ensembl chr 4:21,287,982...21,494,432 		JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (MGI:2176418|PMID:11731796) RGD PMID:11731796 MGI:2176418 NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733 		JBrowse link
G Slit1 slit guidance ligand 1 acts_upstream_of_or_within ISO MGI:1315205 (MGI:3626138|PMID:12097499) RGD PMID:12097499 MGI:3626138 NCBI chr 1:240,409,559...240,558,127
Ensembl chr 1:240,409,561...240,558,127 		JBrowse link
G Slit2 slit guidance ligand 2 acts_upstream_of_or_within ISO MGI:1315203 (MGI:3626138|PMID:12097499) RGD PMID:12097499 MGI:3626138 NCBI chr14:62,616,337...62,955,934
Ensembl chr14:62,617,067...62,955,948 		JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within ISO MGI:5140723 (MGI:5014119|PMID:21646512) RGD PMID:21646512 MGI:5014119 NCBI chr 6:118,198,186...118,252,422
Ensembl chr 6:118,198,201...118,252,418 		JBrowse link
G Zic1 Zic family member 1 involved_in ISO MGI:106676 (MGI:3711407|PMID:17507568) RGD PMID:17507568 MGI:3711407 NCBI chr 8:91,908,548...91,918,020
Ensembl chr 8:91,908,576...91,912,731 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO MGI:106683 (MGI:3711407|PMID:17507568), (MGI:5913214|PMID:28814342) RGD PMID:17507568 PMID:28814342 MGI:3711407 MGI:5913214 NCBI chr  X:136,123,662...136,134,295
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slit1 slit guidance ligand 1 NOT|involved_in ISO (PMID:11748139) RGD PMID:11748139 NCBI chr 1:240,409,559...240,558,127
Ensembl chr 1:240,409,561...240,558,127 		JBrowse link
G Slit2 slit guidance ligand 2 NOT|involved_in ISO (PMID:11748139) RGD PMID:11748139 NCBI chr14:62,616,337...62,955,934
Ensembl chr14:62,617,067...62,955,948 		JBrowse link
G Slit3 slit guidance ligand 3 NOT|involved_in ISO (PMID:11748139) RGD PMID:11748139 NCBI chr10:19,571,798...20,156,634
Ensembl chr10:19,571,684...20,156,634 		JBrowse link
chemorepulsion involved in postnatal olfactory bulb interneuron migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Robo1 roundabout guidance receptor 1 involved_in ISO
IEA		 (PMID:15207848)
GO_REF:0000107		 RGD
Ensembl		 PMID:15207848 GO_REF:0000107 NCBI chr11:10,580,863...11,621,672
Ensembl chr11:10,580,908...11,620,203 		JBrowse link
G Slit2 slit guidance ligand 2 involved_in ISO (PMID:15207848) RGD PMID:15207848 NCBI chr14:62,616,337...62,955,934
Ensembl chr14:62,617,067...62,955,948 		JBrowse link
embryonic olfactory bulb interneuron precursor migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arx aristaless related homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2429693 (MGI:3574008|PMID:15677725)		 Ensembl
RGD		 PMID:15677725 GO_REF:0000107 MGI:3574008 NCBI chr  X:58,016,233...58,028,149
Ensembl chr  X:58,016,233...58,028,142 		JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO MGI:1932522|MGI:2663662 (MGI:3709518|PMID:17409253) RGD PMID:17409253 MGI:3709518 NCBI chr12:11,037,028...11,057,251
Ensembl chr12:11,036,698...11,057,251 		JBrowse link
motogenic signaling involved in postnatal olfactory bulb interneuron migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr1 Fibroblast growth factor receptor 1 IMP RGD PMID:20083104 RGD:2325172 NCBI chr16:66,492,445...66,546,731
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
olfactory bulb interneuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf5 activating transcription factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:5467393 (MGI:5461281|PMID:23090999)		 Ensembl
RGD		 PMID:23090999 GO_REF:0000107 MGI:5461281 NCBI chr 1:95,295,602...95,299,755
Ensembl chr 1:95,295,610...95,299,707 		JBrowse link
G Robo1 roundabout guidance receptor 1 involved_in ISO UniProtKB:Q7TPD3 (MGI:3702250|PMID:17360927) RGD PMID:17360927 MGI:3702250 NCBI chr11:10,580,863...11,621,672
Ensembl chr11:10,580,908...11,620,203 		JBrowse link
G Robo2 roundabout guidance receptor 2 involved_in ISO (MGI:3702250|PMID:17360927) RGD PMID:17360927 MGI:3702250 NCBI chr11:12,528,949...14,096,726
Ensembl chr11:12,528,951...13,041,536 		JBrowse link
G Sall3 spalt-like transcription factor 3 acts_upstream_of_or_within ISO MGI:3052730 (MGI:3798379|PMID:18260139) RGD PMID:18260139 MGI:3798379 NCBI chr18:74,406,058...74,425,754
Ensembl chr18:74,407,560...74,426,789 		JBrowse link
G Wnt5a Wnt family member 5A involved_in ISO (MGI:5285122|PMID:21539518) RGD PMID:21539518 MGI:5285122 NCBI chr16:3,695,667...3,718,234
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
olfactory bulb interneuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf5 activating transcription factor 5 acts_upstream_of_or_within ISO MGI:5467393 (MGI:5461281|PMID:23090999) RGD PMID:23090999 MGI:5461281 NCBI chr 1:95,295,602...95,299,755
Ensembl chr 1:95,295,610...95,299,707 		JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO (MGI:3778596|PMID:18184563) RGD PMID:18184563 MGI:3778596 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G Dlx5 distal-less homeobox 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2180475 (MGI:5774924|PMID:25937343)		 Ensembl
RGD		 PMID:25937343 GO_REF:0000107 MGI:5774924 NCBI chr 4:34,999,139...35,003,504
Ensembl chr 4:34,999,139...35,003,407 		JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3527369|PMID:15543145)		 UniProt
RGD		 PMID:15543145 GO_REF:0000024 MGI:3527369 NCBI chr 9:69,523,733...70,596,743
Ensembl chr 9:69,531,481...70,596,595 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO MGI:2150162 (MGI:1926244|PMID:11060228) RGD PMID:11060228 MGI:1926244 NCBI chr14:33,123,799...33,126,151
Ensembl chr14:33,124,381...33,126,105 		JBrowse link
G Mir200a microRNA 200a acts_upstream_of_or_within ISO (MGI:5774924|PMID:25937343) RGD PMID:25937343 MGI:5774924 NCBI chr 5:166,648,494...166,648,582 JBrowse link
G Mir200b microRNA 200b acts_upstream_of_or_within ISO (MGI:5774924|PMID:25937343) RGD PMID:25937343 MGI:5774924 NCBI chr 5:166,649,272...166,649,366
Ensembl chr 5:166,649,272...166,649,366 		JBrowse link
G Mir200c microRNA 200c acts_upstream_of_or_within ISO (MGI:5774924|PMID:25937343) RGD PMID:25937343 MGI:5774924 NCBI chr 4:157,523,679...157,523,747 JBrowse link
G Mir9-3 microRNA 9-3 acts_upstream_of_or_within ISO (MGI:5774924|PMID:25937343) RGD PMID:25937343 MGI:5774924 NCBI chr 1:133,440,049...133,440,138 JBrowse link
G Sall1 spalt-like transcription factor 1 involved_in ISO (MGI:4420747|PMID:18024993) RGD PMID:18024993 MGI:4420747 NCBI chr19:18,005,782...18,022,705
Ensembl chr19:18,007,503...18,022,705 		JBrowse link
G Uncx UNC homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1928812 (MGI:4949589|PMID:20692344)		 Ensembl
RGD		 PMID:20692344 GO_REF:0000107 MGI:4949589 NCBI chr12:15,092,779...15,097,300
Ensembl chr12:15,092,784...15,097,300 		JBrowse link
olfactory bulb mitral cell layer development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ogdh oxoglutarate dehydrogenase involved_in ISO (MGI:3662936|PMID:16901643) RGD PMID:16901643 MGI:3662936 NCBI chr14:81,150,021...81,217,479
Ensembl chr14:81,150,091...81,217,479 		JBrowse link
G Pax6 paired box 6 IMP RGD PMID:14736749 RGD:8552333 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Sall1 spalt-like transcription factor 1 involved_in ISO (PMID:18024993) RGD PMID:18024993 NCBI chr19:18,005,782...18,022,705
Ensembl chr19:18,007,503...18,022,705 		JBrowse link
tangential migration from the subventricular zone to the olfactory bulb term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO (PMID:21168496) RGD PMID:21168496 NCBI chr 7:122,826,712...122,987,711
Ensembl chr 7:122,826,696...122,987,703 		JBrowse link
G Ogdh oxoglutarate dehydrogenase involved_in ISO (MGI:3662936|PMID:16901643) RGD PMID:16901643 MGI:3662936 NCBI chr14:81,150,021...81,217,479
Ensembl chr14:81,150,091...81,217,479 		JBrowse link
G Slit1 slit guidance ligand 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2179459 (MGI:3042495|PMID:14960623)		 Ensembl
RGD		 PMID:14960623 GO_REF:0000107 MGI:3042495 NCBI chr 1:240,409,559...240,558,127
Ensembl chr 1:240,409,561...240,558,127 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO MGI:2181426|MGI:2385464 (MGI:3578447|PMID:15837932) RGD PMID:15837932 MGI:3578447 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19738
    developmental process 6867
      anatomical structure development 6387
        olfactory bulb development 52
          olfactory bulb interneuron differentiation + 21
          olfactory bulb mitral cell layer development 3
          olfactory bulb tufted cell development 0
          tangential migration from the subventricular zone to the olfactory bulb + 10
Path 2
Term Annotations click to browse term
  biological_process 19738
    developmental process 6867
      anatomical structure development 6387
        multicellular organism development 5151
          system development 4434
            nervous system development 2716
              central nervous system development 1193
                brain development 892
                  forebrain development 550
                    telencephalon development 381
                      olfactory lobe development 55
                        olfactory bulb development 52
                          olfactory bulb interneuron differentiation + 21
                          olfactory bulb mitral cell layer development 3
                          olfactory bulb tufted cell development 0
                          tangential migration from the subventricular zone to the olfactory bulb + 10
paths to the root