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ONTOLOGY REPORT - ANNOTATIONS

Term:limbic system development
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Accession:GO:0021761 term browser browse the term
Definition:The progression of the limbic system over time from its initial formation until its mature state. The limbic system is a collection of structures in the brain involved in emotion, motivation and emotional aspects of memory.


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limbic system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cntnap2 contactin associated protein 2 involved_in
acts_upstream_of_or_within		 ISO (PMID:18179895)
(MGI:4410430|PMID:18179895)		 RGD PMID:18179895 MGI:4410430 NCBI chr 4:74,109,455...76,366,434
Ensembl chr 4:74,109,472...76,362,027 		JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO MGI:3710254 (MGI:3709665|PMID:17473172) RGD PMID:17473172 MGI:3709665 NCBI chr12:36,879,924...36,894,849
Ensembl chr12:36,881,445...36,893,708 		JBrowse link
ammon gyrus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp8 LDL receptor related protein 8 involved_in ISO (MGI:3821675|PMID:18778775) RGD PMID:18778775 MGI:3821675 NCBI chr 5:122,563,468...122,635,434
Ensembl chr 5:122,563,453...122,631,352 		JBrowse link
amygdala development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1a2 ATPase Na+/K+ transporting subunit alpha 2 acts_upstream_of_or_within ISO (MGI:2664023|PMID:12805306) RGD PMID:12805306 MGI:2664023 NCBI chr13:84,729,597...84,754,544
Ensembl chr13:84,729,601...84,754,544 		JBrowse link
G Esr2 estrogen receptor 2 IEP RGD PMID:22791648 RGD:8694158 NCBI chr 6:94,858,438...94,909,630
Ensembl chr 6:94,809,547...94,908,919 		JBrowse link
G Nf1 neurofibromin 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1339975 (MGI:5620820|PMID:25242307)
GO_REF:0000107		 RGD
Ensembl		 PMID:25242307 GO_REF:0000107 MGI:5620820 NCBI chr10:64,306,027...64,539,112
Ensembl chr10:64,306,301...64,536,658 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within ISO MGI:2151350 (MGI:3527227|PMID:12527005) RGD PMID:12527005 MGI:3527227 NCBI chr20:46,050,134...46,070,569
Ensembl chr20:46,050,414...46,073,949 		JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 acts_upstream_of_or_within ISO MGI:97306 (MGI:5620820|PMID:25242307) RGD PMID:25242307 MGI:5620820 NCBI chr 1:152,111,172...152,226,390
Ensembl chr 1:152,111,188...152,226,383 		JBrowse link
G Tbr1 T-box brain transcription factor 1 acts_upstream_of_or_within ISO MGI:2179766 (MGI:5560839|PMID:24441682) RGD PMID:24441682 MGI:5560839 NCBI chr 3:46,350,237...46,368,397
Ensembl chr 3:46,351,213...46,361,041 		JBrowse link
G Uba6 ubiquitin-like modifier activating enzyme 6 acts_upstream_of_or_within ISO MGI:2176173|MGI:5509054 (MGI:5495570|PMID:23499007) RGD PMID:23499007 MGI:5495570 NCBI chr14:21,884,039...21,947,857
Ensembl chr14:21,884,039...21,947,857 		JBrowse link
dentate gyrus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atat1 alpha tubulin acetyltransferase 1 acts_upstream_of_or_within ISO MGI:4453011 (MGI:5516166|PMID:23720746) RGD PMID:23720746 MGI:5516166 NCBI chr20:2,844,595...2,857,809
Ensembl chr20:2,844,616...2,861,964 		JBrowse link
G Btg2 BTG anti-proliferation factor 2 acts_upstream_of_or_within ISO MGI:3525505 (MGI:4418391|PMID:20020054) RGD PMID:20020054 MGI:4418391 NCBI chr13:45,531,881...45,535,642
Ensembl chr13:45,531,925...45,535,628 		JBrowse link
G Csf1r colony stimulating factor 1 receptor IMP RGD PMID:33450391 RGD:126781687 NCBI chr18:54,546,673...54,590,418
Ensembl chr18:54,546,659...54,590,415 		JBrowse link
G Drd1 dopamine receptor D1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2181426|MGI:3707260 (MGI:3703826|PMID:17360497)		 Ensembl
RGD		 PMID:17360497 GO_REF:0000107 MGI:3703826 NCBI chr17:10,540,440...10,544,971
Ensembl chr17:10,540,558...10,545,002 		JBrowse link
G Emx2 empty spiracles homeobox 2 acts_upstream_of_or_within ISO MGI:2148858 (MGI:2153372|PMID:10729342) RGD PMID:10729342 MGI:2153372 NCBI chr 1:258,626,584...258,633,594
Ensembl chr 1:258,626,584...258,633,594 		JBrowse link
G Fezf2 Fez family zinc finger 2 acts_upstream_of_or_within ISO MGI:3046867 (MGI:3702790|PMID:16971467) RGD PMID:16971467 MGI:3702790 NCBI chr15:12,768,614...12,777,554
Ensembl chr15:12,773,762...12,777,554 		JBrowse link
G Kif3a kinesin family member 3a acts_upstream_of_or_within ISO MGI:2179048|MGI:2386464 (MGI:3794243|PMID:18297065) RGD PMID:18297065 MGI:3794243 NCBI chr10:37,725,930...37,761,183
Ensembl chr10:37,725,970...37,759,191 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO MGI:1933764 (MGI:1351293|PMID:10631168) RGD PMID:10631168 MGI:1351293 NCBI chr 2:219,666,549...219,779,815
Ensembl chr 2:219,666,592...219,779,794 		JBrowse link
G Lmx1a LIM homeobox transcription factor 1 alpha acts_upstream_of_or_within ISO MGI:1888413 (MGI:49987|PMID:1638738) RGD PMID:1638738 MGI:49987 NCBI chr13:79,834,614...79,978,253
Ensembl chr13:79,835,019...79,978,253 		JBrowse link
G Mdk midkine acts_upstream_of_or_within
involved_in		 ISO (PMID:10096022)
(MGI:2178952|PMID:10096022)		 RGD PMID:10096022 MGI:2178952 NCBI chr 3:77,901,156...77,903,997
Ensembl chr 3:77,901,158...77,903,130 		JBrowse link
G Mef2c myocyte enhancer factor 2C IEP RGD PMID:18949272 RGD:5131610 NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880 		JBrowse link
G Neurod1 neuronal differentiation 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:106593 (MGI:1858353|PMID:10804213)
(MGI:1352314|PMID:10639171), (MGI:2159022|PMID:10398678)		 UniProt
RGD		 PMID:10398678 PMID:10639171 PMID:10804213 GO_REF:0000024 MGI:1352314 MGI:1858353 MGI:2159022 NCBI chr 3:64,360,222...64,363,526
Ensembl chr 3:64,359,395...64,363,649 		JBrowse link
G Neurod6 neuronal differentiation 6 acts_upstream_of_or_within ISO MGI:1339708 (MGI:1858353|PMID:10804213) RGD PMID:10804213 MGI:1858353 NCBI chr 4:84,846,659...84,849,905
Ensembl chr 4:84,846,231...84,849,999 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within ISO MGI:2151350|MGI:2181426 (MGI:3527227|PMID:12527005), (MGI:3763461|PMID:17953618) RGD PMID:12527005 PMID:17953618 MGI:3527227 MGI:3763461 NCBI chr20:46,050,134...46,070,569
Ensembl chr20:46,050,414...46,073,949 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (MGI:4849596|PMID:20808958) RGD PMID:20808958 MGI:4849596 NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183 		JBrowse link
G Pten phosphatase and tensin homolog involved_in ISO (MGI:3759727|PMID:17706614) RGD PMID:17706614 MGI:3759727 NCBI chr 1:230,631,303...230,696,754
Ensembl chr 1:230,630,338...230,696,838 		JBrowse link
G Reln reelin IMP RGD PMID:15459104 RGD:2317799 NCBI chr 4:12,736,177...13,162,956
Ensembl chr 4:12,736,130...13,162,211 		JBrowse link
G Sct secretin acts_upstream_of_or_within ISO MGI:3815315 (MGI:4939559|PMID:21159798) RGD PMID:21159798 MGI:4939559 NCBI chr 1:196,382,941...196,383,635
Ensembl chr 1:196,382,856...196,383,658 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2176256|MGI:2179048 (MGI:3794243|PMID:18297065)		 Ensembl
RGD		 PMID:18297065 GO_REF:0000107 MGI:3794243 NCBI chr 4:58,344,101...58,372,828
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Tmem108 transmembrane protein 108 involved_in ISO (MGI:5825380|PMID:28096412) RGD PMID:28096412 MGI:5825380 NCBI chr 8:104,066,081...104,360,172
Ensembl chr 8:104,066,078...104,360,094 		JBrowse link
G Tuba1a tubulin, alpha 1A involved_in ISO MGI:3617352 (MGI:5903588|PMID:21041996) RGD PMID:21041996 MGI:5903588 NCBI chr 7:130,113,214...130,116,880
Ensembl chr 7:130,081,032...130,196,186 		JBrowse link
fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr1 Fibroblast growth factor receptor 1 involved_in ISO (MGI:4452541|PMID:20410112) RGD PMID:20410112 MGI:4452541 NCBI chr16:66,492,445...66,546,731
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 involved_in ISO (MGI:4452541|PMID:20410112) RGD PMID:20410112 MGI:4452541 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
gonadotrophin-releasing hormone neuronal migration to the hypothalamus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ndnf neuron-derived neurotrophic factor involved_in ISO (MGI:6442643|PMID:31883645) RGD PMID:31883645 MGI:6442643 NCBI chr 4:94,944,749...94,987,414
Ensembl chr 4:94,944,360...94,981,873 		JBrowse link
G Nrp1 neuropilin 1 involved_in ISO (MGI:4850173|PMID:21059704) RGD PMID:21059704 MGI:4850173 NCBI chr19:56,359,455...56,514,628
Ensembl chr19:56,359,455...56,513,633 		JBrowse link
G Nrp2 neuropilin 2 involved_in ISO (MGI:4850173|PMID:21059704) RGD PMID:21059704 MGI:4850173 NCBI chr 9:64,122,815...64,238,007
Ensembl chr 9:64,123,132...64,237,958 		JBrowse link
G Plxna1 plexin A1 involved_in ISO UniProtKB:P70208 (MGI:6389759|PMID:31690636) RGD PMID:31690636 MGI:6389759 NCBI chr 4:121,737,934...121,782,901
Ensembl chr 4:121,737,945...122,024,196 		JBrowse link
G Plxna3 plexin A3 involved_in ISO UniProtKB:P70206 (MGI:6389759|PMID:31690636) RGD PMID:31690636 MGI:6389759 NCBI chr  X:152,115,699...152,131,608
Ensembl chr  X:152,115,819...152,131,603 		JBrowse link
G Sema3a semaphorin 3A involved_in ISO (MGI:4850173|PMID:21059704) RGD PMID:21059704 MGI:4850173 NCBI chr 4:21,282,398...21,754,834
Ensembl chr 4:21,287,982...21,494,432 		JBrowse link
G Sema3e semaphorin 3E involved_in ISO (PMID:25985275) RGD PMID:25985275 NCBI chr 4:20,297,534...20,555,287
Ensembl chr 4:20,299,718...20,555,229 		JBrowse link
hippocampus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1c activin A receptor type 1C IEP RGD PMID:8940033 RGD:631880 NCBI chr 3:42,815,490...42,892,423
Ensembl chr 3:42,822,610...42,892,327 		JBrowse link
G Akap5 A-kinase anchoring protein 5 IEP RGD PMID:19535604 RGD:2313144 NCBI chr 6:95,051,527...95,061,075
Ensembl chr 6:95,051,537...95,061,578 		JBrowse link
G Akr1c14 aldo-keto reductase family 1, member C14 IEP RGD PMID:21047951 RGD:4145527 NCBI chr17:66,156,286...66,173,277
Ensembl chr17:66,156,288...66,173,277 		JBrowse link
G Alk ALK receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:5700373 (MGI:5697626|PMID:17487225) RGD PMID:17487225 MGI:5697626 NCBI chr 6:22,879,653...23,599,636
Ensembl chr 6:22,880,625...23,598,034 		JBrowse link
G Anxa3 annexin A3 IEP RGD PMID:18493952 RGD:2302825 NCBI chr14:12,727,708...12,781,717
Ensembl chr14:12,719,795...12,781,617 		JBrowse link
G Atg16l1 autophagy related 16-like 1 acts_upstream_of_or_within ISO MGI:4432181 (MGI:6095492|PMID:29078390) RGD PMID:29078390 MGI:6095492 NCBI chr 9:88,420,737...88,457,530
Ensembl chr 9:88,422,038...88,457,529 		JBrowse link
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 IEP RGD PMID:16200642 RGD:6906893 NCBI chr13:45,156,137...45,255,292
Ensembl chr13:45,156,146...45,255,246 		JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within ISO MGI:3767672 (MGI:3767384|PMID:18032602) RGD PMID:18032602 MGI:3767384 NCBI chr 1:202,184,812...202,204,118
Ensembl chr 1:202,186,125...202,204,086 		JBrowse link
G Bbs2 Bardet-Biedl syndrome 2 acts_upstream_of_or_within ISO MGI:3521669 (MGI:3767384|PMID:18032602) RGD PMID:18032602 MGI:3767384 NCBI chr19:10,909,653...10,944,998
Ensembl chr19:10,909,619...10,944,993 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO MGI:3045473 (MGI:3767384|PMID:18032602), (MGI:5604561|PMID:24695551) RGD PMID:18032602 PMID:24695551 MGI:3767384 MGI:5604561 NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607 		JBrowse link
G Bcan brevican acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:2388924 (MGI:2388543|PMID:12370289)
GO_REF:0000107		 RGD
Ensembl		 PMID:12370289 GO_REF:0000107 MGI:2388543 NCBI chr 2:173,454,479...173,467,717
Ensembl chr 2:173,454,482...173,467,460 		JBrowse link
G Casp3 caspase 3 IEP RGD PMID:18459132 RGD:2293317 NCBI chr16:45,662,910...45,681,171
Ensembl chr16:45,662,910...45,684,648 		JBrowse link
G Cdk5 cyclin-dependent kinase 5 acts_upstream_of_or_within ISO MGI:1861809 (MGI:2149271|PMID:11517264) RGD PMID:11517264 MGI:2149271 NCBI chr 4:10,754,682...10,760,110
Ensembl chr 4:10,754,687...10,760,112 		JBrowse link
G Cdk5r1 cyclin-dependent kinase 5 regulatory subunit 1 acts_upstream_of_or_within ISO MGI:1330828 (MGI:2149271|PMID:11517264) RGD PMID:11517264 MGI:2149271 NCBI chr10:65,484,266...65,485,467
Ensembl chr10:65,483,941...65,488,456 		JBrowse link
G Cdk5r2 cyclin-dependent kinase 5 regulatory subunit 2 acts_upstream_of_or_within ISO MGI:101764 (MGI:2149271|PMID:11517264) RGD PMID:11517264 MGI:2149271 NCBI chr 9:76,416,251...76,417,719
Ensembl chr 9:76,416,062...76,418,344 		JBrowse link
G Cfl1 cofilin 1 IEP RGD PMID:27073215 RGD:11568695 NCBI chr 1:202,796,012...202,801,337
Ensembl chr 1:202,786,627...202,817,587 		JBrowse link
G Chrna2 cholinergic receptor nicotinic alpha 2 subunit part_of IEP RGD PMID:17046198 RGD:152995358 NCBI chr15:40,342,317...40,358,601
Ensembl chr15:40,342,317...40,358,601 		JBrowse link
G Chrna5 cholinergic receptor nicotinic alpha 5 subunit IEP RGD PMID:15558717 RGD:150530459 NCBI chr 8:55,369,794...55,398,526
Ensembl chr 8:55,369,794...55,398,146 		JBrowse link
G Crk CRK proto-oncogene, adaptor protein acts_upstream_of_or_within ISO MGI:104686 (MGI:3822695|PMID:19074029) RGD PMID:19074029 MGI:3822695 NCBI chr10:60,530,469...60,556,703
Ensembl chr10:60,530,464...60,553,406 		JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein acts_upstream_of_or_within ISO MGI:88508 (MGI:3822695|PMID:19074029) RGD PMID:19074029 MGI:3822695 NCBI chr11:83,528,788...83,563,214
Ensembl chr11:83,526,530...83,563,238 		JBrowse link
G Cyp11a1 cytochrome P450, family 11, subfamily a, polypeptide 1 IEP RGD PMID:21047951 RGD:4145527 NCBI chr 8:58,422,807...58,434,342
Ensembl chr 8:58,404,669...58,434,338 		JBrowse link
G Cyp17a1 cytochrome P450, family 17, subfamily a, polypeptide 1 IEP RGD PMID:21047951 RGD:4145527 NCBI chr 1:245,535,462...245,543,148
Ensembl chr 1:245,535,462...245,541,573 		JBrowse link
G Cyp19a1 cytochrome P450, family 19, subfamily a, polypeptide 1 IEP RGD PMID:21047951 RGD:4145527 NCBI chr 8:54,553,165...54,580,758
Ensembl chr 8:54,553,165...54,580,758 		JBrowse link
G Dab1 DAB adaptor protein 1 acts_upstream_of_or_within ISO MGI:3777252 (MGI:3810044|PMID:18477607) RGD PMID:18477607 MGI:3810044 NCBI chr 5:118,392,953...119,513,625
Ensembl chr 5:119,140,533...119,510,552 		JBrowse link
G Dclk2 doublecortin-like kinase 2 acts_upstream_of_or_within ISO MGI:1277171 (MGI:3844387|PMID:19342486) RGD PMID:19342486 MGI:3844387 NCBI chr 2:172,202,733...172,338,411
Ensembl chr 2:172,208,706...172,338,250 		JBrowse link
G Dcx doublecortin involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1918012|MGI:2387757 (MGI:3844387|PMID:19342486)		 Ensembl
RGD		 PMID:19342486 GO_REF:0000107 MGI:3844387 NCBI chr  X:107,430,767...107,573,612
Ensembl chr  X:107,430,767...107,507,476 		JBrowse link
G Dlx1 distal-less homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:94902 (MGI:1928567|PMID:11163262)		 Ensembl
RGD		 PMID:11163262 GO_REF:0000107 MGI:1928567 NCBI chr 3:56,356,190...56,360,780
Ensembl chr 3:56,356,190...56,360,780 		JBrowse link
G Dlx2 distal-less homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:94901 (MGI:1928567|PMID:11163262)		 Ensembl
RGD		 PMID:11163262 GO_REF:0000107 MGI:1928567 NCBI chr 3:56,371,347...56,373,230
Ensembl chr 3:56,370,483...56,373,597 		JBrowse link
G Drd1 dopamine receptor D1 acts_upstream_of_or_within ISO MGI:2181426|MGI:3707260 (MGI:3703826|PMID:17360497) RGD PMID:17360497 MGI:3703826 NCBI chr17:10,540,440...10,544,971
Ensembl chr17:10,540,558...10,545,002 		JBrowse link
G Eif2b2 eukaryotic translation initiation factor 2B subunit beta IEP RGD PMID:12850562 RGD:11041879 NCBI chr 6:104,866,926...104,873,351
Ensembl chr 6:104,866,753...104,873,353 		JBrowse link
G Eif2b3 eukaryotic translation initiation factor 2B subunit gamma IEP RGD PMID:12850562 RGD:11041879 NCBI chr 5:130,492,167...130,558,692
Ensembl chr 5:130,492,220...130,563,332 		JBrowse link
G Eif2b4 eukaryotic translation initiation factor 2B subunit delta IEP RGD PMID:12850562 RGD:11041879 NCBI chr 6:25,183,177...25,188,832
Ensembl chr 6:25,183,186...25,188,829 		JBrowse link
G Eif2b5 eukaryotic translation initiation factor 2B subunit epsilon IEP RGD PMID:12850562 RGD:11041879 NCBI chr11:80,394,433...80,404,468
Ensembl chr11:80,394,433...80,404,419 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 IEP RGD PMID:18565716 RGD:13204724 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715 		JBrowse link
G Epha5 EPH receptor A5 involved_in ISO
ISS		 (MGI:2384261|PMID:12124402)
GO_REF:0000024		 RGD
UniProt		 PMID:12124402 GO_REF:0000024 MGI:2384261 NCBI chr14:23,653,393...24,020,135
Ensembl chr14:23,653,393...24,017,317 		JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit IEP RGD PMID:23932971 RGD:9587811 NCBI chr10:86,126,023...86,162,001
Ensembl chr10:86,126,015...86,161,921 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit IEP RGD PMID:23932971 RGD:9587811 NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362 		JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 IEP RGD PMID:14992819 RGD:13208825 NCBI chr 8:36,544,462...36,589,684
Ensembl chr 8:36,544,535...36,589,683 		JBrowse link
G Fgf13 fibroblast growth factor 13 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5431268|PMID:22726441)		 UniProt
RGD		 PMID:22726441 GO_REF:0000024 MGI:5431268 NCBI chr  X:137,276,498...137,800,056
Ensembl chr  X:137,276,511...137,800,391 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:2684610|MGI:3798847 (MGI:5523775|PMID:22235033) RGD PMID:22235033 MGI:5523775 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A IEP RGD PMID:19535712 RGD:2325978 NCBI chr10:5,630,684...6,043,341
Ensembl chr10:5,631,369...6,044,637 		JBrowse link
G Grin2b glutamate ionotropic receptor NMDA type subunit 2B IEP RGD PMID:19535712 RGD:2325978 NCBI chr 4:168,580,824...169,044,110
Ensembl chr 4:168,599,546...169,042,279 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in ISO
IEA		 (PMID:19581563)
GO_REF:0000107		 RGD
Ensembl		 PMID:19581563 GO_REF:0000107 NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646 		JBrowse link
G Hdac1 histone deacetylase 1 acts_upstream_of_or_within ISO MGI:1097691 (MGI:3844761|PMID:19380719) RGD PMID:19380719 MGI:3844761 NCBI chr 5:141,853,992...141,881,057
Ensembl chr 5:141,853,989...141,881,111 		JBrowse link
G Hdac2 histone deacetylase 2 acts_upstream_of_or_within ISO MGI:108086 (MGI:3844761|PMID:19380719) RGD PMID:19380719 MGI:3844761 NCBI chr20:40,548,250...40,571,609
Ensembl chr20:40,548,250...40,571,609 		JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IEP RGD PMID:22102872 RGD:10002783 NCBI chr17:6,262,936...6,275,001
Ensembl chr17:6,262,998...6,274,997 		JBrowse link
G Hsd17b3 hydroxysteroid (17-beta) dehydrogenase 3 IEP RGD PMID:21047951 RGD:4145527 NCBI chr17:1,027,229...1,058,554
Ensembl chr17:1,027,229...1,058,554 		JBrowse link
G Hsd17b7 hydroxysteroid (17-beta) dehydrogenase 7 IEP RGD PMID:21047951 RGD:4145527 NCBI chr13:82,170,079...82,190,018
Ensembl chr13:82,173,179...82,190,017 		JBrowse link
G Hsd3b1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 involved_in IEP
IBA		 PMID:21873635 RGD
GO_Central		 PMID:21047951 PMID:21873635 RGD:4145527, RGD:13792537 NCBI chr 2:186,169,864...186,175,984
Ensembl chr 2:186,169,863...186,175,999 		JBrowse link
G Hsd3b2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 involved_in IEP
IBA		 PMID:21873635 RGD
GO_Central		 PMID:21047951 PMID:21873635 RGD:4145527, RGD:13792537 NCBI chr 2:186,095,897...186,105,354
Ensembl chr 2:186,095,897...186,101,852 		JBrowse link
G Hsd3b3 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:186,138,044...186,144,024
Ensembl chr 2:186,138,044...186,144,033 		JBrowse link
G Hsd3b5 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:186,008,944...186,028,417
Ensembl chr 2:186,008,943...186,020,393 		JBrowse link
G Htr5a 5-hydroxytryptamine receptor 5A IEP RGD PMID:16572590 RGD:2316993 NCBI chr 4:7,444,968...7,454,651
Ensembl chr 4:7,444,968...7,454,651 		JBrowse link
G Id4 inhibitor of DNA binding 4 acts_upstream_of_or_within ISO MGI:3505549 (MGI:3487176|PMID:15469968) RGD PMID:15469968 MGI:3487176 NCBI chr17:16,389,387...16,391,956
Ensembl chr17:16,389,387...16,392,470 		JBrowse link
G Igf1r insulin-like growth factor 1 receptor IEP RGD PMID:22042446 RGD:10403040 NCBI chr 1:121,549,839...121,838,545
Ensembl chr 1:121,550,743...121,831,777 		JBrowse link
G Insr insulin receptor IEP RGD PMID:22042446 RGD:10403040 NCBI chr12:1,193,193...1,330,976
Ensembl chr12:1,197,100...1,330,883 		JBrowse link
G Kcna1 potassium voltage-gated channel subfamily A member 1 involved_in ISO (MGI:5613474|PMID:17315199) RGD PMID:17315199 MGI:5613474 NCBI chr 4:159,464,223...159,472,905
Ensembl chr 4:159,464,188...159,472,682 		JBrowse link
G Kdm6b lysine demethylase 6B IDA RGD PMID:23932971 RGD:9587811 NCBI chr10:54,120,716...54,142,212
Ensembl chr10:54,121,848...54,130,794 		JBrowse link
G Kif14 kinesin family member 14 involved_in ISO (MGI:5485315|PMID:23308235) RGD PMID:23308235 MGI:5485315 NCBI chr13:47,926,975...47,990,598
Ensembl chr13:47,927,044...47,989,164 		JBrowse link
G Kif5a kinesin family member 5A IEP RGD PMID:9349526 RGD:12792964 NCBI chr 7:63,051,894...63,089,024
Ensembl chr 7:63,049,424...63,092,858 		JBrowse link
G Kif5b kinesin family member 5B IEP RGD PMID:9349526 RGD:12792964 NCBI chr17:51,489,873...51,527,508
Ensembl chr17:51,489,944...51,527,508 		JBrowse link
G Kirrel3 kirre like nephrin family adhesion molecule 3 involved_in ISO (MGI:5705162|PMID:26575286) RGD PMID:26575286 MGI:5705162 NCBI chr 8:32,865,779...33,407,555
Ensembl chr 8:32,862,776...33,405,676 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO MGI:1933764 (MGI:1351293|PMID:10631168) RGD PMID:10631168 MGI:1351293 NCBI chr 2:219,666,549...219,779,815
Ensembl chr 2:219,666,592...219,779,794 		JBrowse link
G Lhx5 LIM homeobox 5 acts_upstream_of_or_within ISO MGI:2152620 (MGI:1337234|PMID:10325223) RGD PMID:10325223 MGI:1337234 NCBI chr12:36,126,186...36,134,625
Ensembl chr12:36,126,186...36,134,625 		JBrowse link
G Lmx1a LIM homeobox transcription factor 1 alpha acts_upstream_of_or_within ISO MGI:1888413 (MGI:49987|PMID:1638738) RGD PMID:1638738 MGI:49987 NCBI chr13:79,834,614...79,978,253
Ensembl chr13:79,835,019...79,978,253 		JBrowse link
G Lrp8 LDL receptor related protein 8 acts_upstream_of_or_within ISO MGI:109520 (MGI:3769085|PMID:17330141) RGD PMID:17330141 MGI:3769085 NCBI chr 5:122,563,468...122,635,434
Ensembl chr 5:122,563,453...122,631,352 		JBrowse link
G Mas1 MAS1 proto-oncogene, G protein-coupled receptor IEP RGD PMID:1521325 RGD:2316795 NCBI chr 1:47,879,956...47,911,500
Ensembl chr 1:47,880,309...47,911,709 		JBrowse link
G Mdk midkine involved_in ISO (MGI:2178952|PMID:10096022) RGD PMID:10096022 MGI:2178952 NCBI chr 3:77,901,156...77,903,997
Ensembl chr 3:77,901,158...77,903,130 		JBrowse link
G Mecp2 methyl CpG binding protein 2 IEP RGD PMID:14751287 RGD:12743658 NCBI chr  X:151,781,177...151,844,687
Ensembl chr  X:151,789,930...151,844,689 		JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid involved_in ISO (MGI:5571501|PMID:24828044) RGD PMID:24828044 MGI:5571501 NCBI chr 5:135,225,801...135,240,744
Ensembl chr 5:135,225,816...135,240,690 		JBrowse link
G Mkks MKKS centrosomal shuttling protein acts_upstream_of_or_within ISO MGI:3526444 (MGI:3767384|PMID:18032602) RGD PMID:18032602 MGI:3767384 NCBI chr 3:124,201,877...124,221,142
Ensembl chr 3:124,201,877...124,220,162 		JBrowse link
G Ncoa1 nuclear receptor coactivator 1 IEP RGD PMID:22085911 RGD:5688137 NCBI chr 6:27,232,609...27,507,992
Ensembl chr 6:27,232,611...27,475,664 		JBrowse link
G Nefh neurofilament heavy chain IEP RGD PMID:14620872 RGD:9743946 NCBI chr14:79,830,362...79,840,347
Ensembl chr14:79,830,362...79,840,351 		JBrowse link
G Nefl neurofilament light chain IEP RGD PMID:14620872 RGD:9743946 NCBI chr15:42,301,920...42,305,793
Ensembl chr15:42,301,916...42,305,793 		JBrowse link
G Nefm neurofilament medium chain IEP RGD PMID:14620872 RGD:9743946 NCBI chr15:42,360,449...42,365,753
Ensembl chr15:42,360,454...42,365,755 		JBrowse link
G Nf2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor acts_upstream_of_or_within ISO (MGI:5502251|PMID:23863479) RGD PMID:23863479 MGI:5502251 NCBI chr14:79,627,399...79,710,709
Ensembl chr14:79,627,399...79,710,667 		JBrowse link
G Nfix nuclear factor I X involved_in ISO MGI:3802571 (MGI:3801392|PMID:18477394), (MGI:5510896|PMID:23964093), (MGI:5526876|PMID:23776487), (MGI:5612951|PMID:23042739) RGD PMID:18477394 PMID:23042739 PMID:23776487 PMID:23964093 MGI:3801392 MGI:5510896 MGI:5526876 MGI:5612951 NCBI chr19:23,355,388...23,450,360
Ensembl chr19:23,355,498...23,448,265 		JBrowse link
G Nkx2-1 NK2 homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857494 (MGI:1928567|PMID:11163262)		 Ensembl
RGD		 PMID:11163262 GO_REF:0000107 MGI:1928567 NCBI chr 6:73,996,601...74,001,483
Ensembl chr 6:73,996,601...73,999,791 		JBrowse link
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 IEP RGD PMID:18493952 RGD:2302825 NCBI chr10:78,907,036...78,929,659
Ensembl chr10:78,906,083...78,916,408 		JBrowse link
G Nog noggin IEP RGD PMID:15171992 RGD:10416525 NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 acts_upstream_of_or_within ISO MGI:3037444 (MGI:3056852|PMID:15456880) RGD PMID:15456880 MGI:3056852 NCBI chr 5:62,361,588...62,401,489
Ensembl chr 5:62,361,822...62,402,733 		JBrowse link
G Ogdh oxoglutarate dehydrogenase acts_upstream_of_or_within
involved_in		 ISO (PMID:16901643)
(MGI:3662936|PMID:16901643)		 RGD PMID:16901643 MGI:3662936 NCBI chr14:81,150,021...81,217,479
Ensembl chr14:81,150,091...81,217,479 		JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 acts_upstream_of_or_within ISO MGI:1340044|MGI:2384054 (MGI:2183347|PMID:10729324), (MGI:3769085|PMID:17330141) RGD PMID:10729324 PMID:17330141 MGI:2183347 MGI:3769085 NCBI chr10:59,533,042...59,591,808
Ensembl chr10:59,534,117...59,591,808 		JBrowse link
G Pebp1 phosphatidylethanolamine binding protein 1 IEP RGD PMID:18493952 RGD:2302825 NCBI chr12:39,302,864...39,307,064
Ensembl chr12:39,302,840...39,307,862 		JBrowse link
G Phlpp1 PH domain and leucine rich repeat protein phosphatase 1 IEP RGD PMID:20819118 RGD:8693633 NCBI chr13:22,308,532...22,530,978
Ensembl chr13:22,308,548...22,530,977 		JBrowse link
G Phlpp2 PH domain and leucine rich repeat protein phosphatase 2 IEP RGD PMID:20819118 RGD:8693633 NCBI chr19:37,835,125...37,901,804
Ensembl chr19:37,835,125...37,905,513 		JBrowse link
G Plxna3 plexin A3 acts_upstream_of_or_within ISO MGI:2386961 (MGI:2152659|PMID:11683995) RGD PMID:11683995 MGI:2152659 NCBI chr  X:152,115,699...152,131,608
Ensembl chr  X:152,115,819...152,131,603 		JBrowse link
G Ppp1r9b protein phosphatase 1, regulatory subunit 9B IEP RGD PMID:21123436 RGD:10043818 NCBI chr10:79,938,055...79,954,085
Ensembl chr10:79,938,066...79,954,083 		JBrowse link
G Ptprs protein tyrosine phosphatase, receptor type, S acts_upstream_of_or_within ISO MGI:2158734 (MGI:3614607|PMID:15842738) RGD PMID:15842738 MGI:3614607 NCBI chr 9:1,245,408...1,307,015
Ensembl chr 9:1,245,410...1,306,947 		JBrowse link
G Ptprz1 protein tyrosine phosphatase, receptor type Z1 IEP RGD PMID:10906718 RGD:9589828 NCBI chr 4:51,397,316...51,595,220
Ensembl chr 4:51,397,601...51,595,218 		JBrowse link
G Ran RAN, member RAS oncogene family IEP RGD PMID:18493952 RGD:2302825 NCBI chr12:27,674,049...27,678,598
Ensembl chr12:27,674,050...27,678,276 		JBrowse link
G Rara retinoic acid receptor, alpha IEP RGD PMID:18619947 RGD:8693612 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142 		JBrowse link
G Reln reelin involved_in IEA
ISO		 GO_REF:0000107
(MGI:3765383|PMID:17229826)		 Ensembl
RGD		 PMID:17229826 GO_REF:0000107 MGI:3765383 NCBI chr 4:12,736,177...13,162,956
Ensembl chr 4:12,736,130...13,162,211 		JBrowse link
G Sct secretin involved_in ISS
ISO		 GO_REF:0000024
(MGI:3814626|PMID:18534766)		 UniProt
RGD		 PMID:18534766 GO_REF:0000024 MGI:3814626 NCBI chr 1:196,382,941...196,383,635
Ensembl chr 1:196,382,856...196,383,658 		JBrowse link
G Sema6b semaphorin 6B involved_in ISS
ISO		 GO_REF:0000024
(MGI:4454564|PMID:20484647)		 UniProt
RGD		 PMID:20484647 GO_REF:0000024 MGI:4454564 NCBI chr 9:950,939...967,905
Ensembl chr 9:950,939...961,521 		JBrowse link
G Slc17a6 solute carrier family 17 member 6 IEP RGD PMID:18502731 RGD:9999204 NCBI chr 1:101,212,489...101,252,543
Ensembl chr 1:101,212,489...101,252,542 		JBrowse link
G Slc32a1 solute carrier family 32 member 1 IEP RGD PMID:18502731 RGD:9999204 NCBI chr 3:147,267,373...147,271,842
Ensembl chr 3:147,267,373...147,271,844 		JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 IEP RGD PMID:8770891 RGD:4892048 NCBI chr 1:33,686,069...33,720,468
Ensembl chr 1:33,686,391...33,720,461 		JBrowse link
G Srd5a2 steroid 5 alpha-reductase 2 IEP RGD PMID:21047951 RGD:4145527 NCBI chr 6:21,426,225...21,465,727
Ensembl chr 6:21,426,215...21,462,112 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO MGI:2181426|MGI:2385464 (MGI:3578447|PMID:15837932) RGD PMID:15837932 MGI:3578447 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
G Tent2 terminal nucleotidyltransferase 2 IEP RGD PMID:24074826 RGD:9684936 NCBI chr 2:24,380,135...24,432,099
Ensembl chr 2:24,380,225...24,432,099 		JBrowse link
G Tp73 tumor protein p73 acts_upstream_of_or_within ISO MGI:1859911 (MGI:1354064|PMID:10716451) RGD PMID:10716451 MGI:1354064 NCBI chr 5:164,621,377...164,703,958
Ensembl chr 5:164,621,377...164,681,128 		JBrowse link
G Tsc1 TSC complex subunit 1 acts_upstream_of_or_within ISO MGI:2176055|MGI:2656240 (MGI:3712408|PMID:17522300) RGD PMID:17522300 MGI:3712408 NCBI chr 3:11,969,547...12,018,591
Ensembl chr 3:11,979,729...12,015,674 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan involved_in IEA
ISO
ISS		 GO_REF:0000107
(MGI:6478862|PMID:31983064)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:31983064 GO_REF:0000024 GO_REF:0000107 MGI:6478862 NCBI chr 1:152,660,259...152,671,682
Ensembl chr 1:152,656,693...152,672,588 		JBrowse link
G Tuba1a tubulin, alpha 1A involved_in ISO MGI:3617352 (MGI:3697948|PMID:17218254) RGD PMID:17218254 MGI:3697948 NCBI chr 7:130,113,214...130,116,880
Ensembl chr 7:130,081,032...130,196,186 		JBrowse link
G Uba6 ubiquitin-like modifier activating enzyme 6 acts_upstream_of_or_within ISO MGI:2176173|MGI:5509054 (MGI:5495570|PMID:23499007) RGD PMID:23499007 MGI:5495570 NCBI chr14:21,884,039...21,947,857
Ensembl chr14:21,884,039...21,947,857 		JBrowse link
G Uqcrq ubiquinol-cytochrome c reductase, complex III subunit VII acts_upstream_of_or_within
involved_in		 ISO (PMID:16901643)
(MGI:3662936|PMID:16901643)		 RGD PMID:16901643 MGI:3662936 NCBI chr10:37,585,864...37,589,328
Ensembl chr10:37,586,888...37,589,169 		JBrowse link
G Usp9x ubiquitin specific peptidase 9, X-linked acts_upstream_of_or_within ISO MGI:5438072 (MGI:5532214|PMID:23861879) RGD PMID:23861879 MGI:5532214 NCBI chr  X:9,588,825...9,726,993
Ensembl chr  X:9,588,825...9,696,711 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO MGI:1857489 (MGI:1351292|PMID:10631167) RGD PMID:10631167 MGI:1351292 NCBI chr10:44,034,174...44,078,463
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
G Xrcc1 X-ray repair cross complementing 1 acts_upstream_of_or_within ISO MGI:3836442 (MGI:4359093|PMID:19633665) RGD PMID:19633665 MGI:4359093 NCBI chr 1:80,140,495...80,168,705
Ensembl chr 1:80,141,207...80,168,701 		JBrowse link
G Xrn2 5'-3' exoribonuclease 2 IEP RGD PMID:23933240 RGD:9684963 NCBI chr 3:134,436,916...134,509,308
Ensembl chr 3:134,437,109...134,509,306 		JBrowse link
G Ywhae tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon acts_upstream_of_or_within ISO MGI:2667341 (MGI:2665158|PMID:12796778) RGD PMID:12796778 MGI:2665158 NCBI chr10:60,584,665...60,622,352
Ensembl chr10:60,584,652...60,671,589 		JBrowse link
G Zbtb18 zinc finger and BTB domain containing 18 acts_upstream_of_or_within ISO MGI:3851929 (MGI:3851676|PMID:19409883) RGD PMID:19409883 MGI:3851676 NCBI chr13:89,439,633...89,447,958
Ensembl chr13:89,439,420...89,448,862 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO MGI:2387499|MGI:2684610 (MGI:3718270|PMID:17644613) RGD PMID:17644613 MGI:3718270 NCBI chr 3:29,219,765...29,342,094
Ensembl chr 3:29,218,301...29,345,157 		JBrowse link
G Zic1 Zic family member 1 involved_in ISO MGI:106676 (MGI:3711407|PMID:17507568) RGD PMID:17507568 MGI:3711407 NCBI chr 8:91,908,548...91,918,020
Ensembl chr 8:91,908,576...91,912,731 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO MGI:106683 (MGI:3711407|PMID:17507568) RGD PMID:17507568 MGI:3711407 NCBI chr  X:136,123,662...136,134,295
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
hypothalamus cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hap1 huntingtin-associated protein 1 involved_in IEA
ISO		 GO_REF:0000107
(MGI:5560429|PMID:24355921)		 Ensembl
RGD		 PMID:24355921 GO_REF:0000107 MGI:5560429 NCBI chr10:85,277,890...85,286,126
Ensembl chr10:85,277,890...85,286,126 		JBrowse link
G Otp orthopedia homeobox acts_upstream_of_or_within ISO MGI:2180541 (MGI:1347696|PMID:10557207) RGD PMID:10557207 MGI:1347696 NCBI chr 2:26,108,158...26,116,359
Ensembl chr 2:26,108,163...26,116,359 		JBrowse link
G Pou3f2 POU class 3 homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857996 (MGI:77941|PMID:8543156)		 Ensembl
RGD		 PMID:8543156 GO_REF:0000107 MGI:77941 NCBI chr 5:36,077,930...36,083,838
Ensembl chr 5:36,077,930...36,083,838 		JBrowse link
G Prdm13 PR/SET domain 13 involved_in ISO (MGI:6836711|PMID:34730112) RGD PMID:34730112 MGI:6836711 NCBI chr 5:35,220,815...35,233,641
Ensembl chr 5:35,225,435...35,232,881 		JBrowse link
G Prop1 PROP paired-like homeobox 1 acts_upstream_of_or_within ISO MGI:1856842 (MGI:85929|PMID:9067988) RGD PMID:9067988 MGI:85929 NCBI chr10:35,271,959...35,274,434
Ensembl chr10:35,271,973...35,274,434 		JBrowse link
hypothalamus cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxb1 forkhead box B1 involved_in ISO (MGI:4887555|PMID:19046377) RGD PMID:19046377 MGI:4887555 NCBI chr 8:70,407,221...70,409,841
Ensembl chr 8:70,408,186...70,409,781 		JBrowse link
G Pitx2 paired-like homeodomain 2 acts_upstream_of_or_within ISO MGI:1857846 (MGI:3790896|PMID:18206388) RGD PMID:18206388 MGI:3790896 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
hypothalamus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO MGI:1857429 (MGI:3054131|PMID:15342910) RGD PMID:15342910 MGI:3054131 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368 		JBrowse link
G Crh corticotropin releasing hormone IEP RGD PMID:20002962 RGD:5130950 NCBI chr 2:102,143,055...102,144,919
Ensembl chr 2:102,143,055...102,144,919 		JBrowse link
G Crhr1 corticotropin releasing hormone receptor 1 IEP RGD PMID:20002962 RGD:5130950 NCBI chr10:89,040,203...89,083,481
Ensembl chr10:89,040,203...89,083,481 		JBrowse link
G Crhr2 corticotropin releasing hormone receptor 2 IEP RGD PMID:20002962 RGD:5130950 NCBI chr 4:84,222,897...84,265,924
Ensembl chr 4:84,224,002...84,265,904 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in ISO
IEA		 MGI:1858008 (MGI:6460489|PMID:32868762)
GO_REF:0000107		 RGD
Ensembl		 PMID:32868762 GO_REF:0000107 MGI:6460489 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Cyp19a1 cytochrome P450, family 19, subfamily a, polypeptide 1 IEP RGD PMID:15804399 RGD:4891928 NCBI chr 8:54,553,165...54,580,758
Ensembl chr 8:54,553,165...54,580,758 		JBrowse link
G Esr2 estrogen receptor 2 IEP RGD PMID:12960049 RGD:1582276 NCBI chr 6:94,858,438...94,909,630
Ensembl chr 6:94,809,547...94,908,919 		JBrowse link
G Ets1 ETS proto-oncogene 1, transcription factor IEP RGD PMID:8946059 RGD:2313681 NCBI chr 8:31,045,909...31,168,010
Ensembl chr 8:31,045,945...31,168,010 		JBrowse link
G Gsx1 GS homeobox 1 acts_upstream_of_or_within ISO MGI:2154448 (MGI:79250|PMID:8631293) RGD PMID:8631293 MGI:79250 NCBI chr12:7,881,460...7,882,753
Ensembl chr12:7,881,460...7,882,753 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor IEP RGD PMID:23291449 RGD:7207858 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630 		JBrowse link
G Ncoa1 nuclear receptor coactivator 1 IEP RGD PMID:12551846 RGD:5688241 NCBI chr 6:27,232,609...27,507,992
Ensembl chr 6:27,232,611...27,475,664 		JBrowse link
G Nkx2-1 NK2 homeobox 1 involved_in ISO
IEA		 MGI:5302534 (MGI:6460489|PMID:32868762)
GO_REF:0000107		 RGD
Ensembl		 PMID:32868762 GO_REF:0000107 MGI:6460489 NCBI chr 6:73,996,601...74,001,483
Ensembl chr 6:73,996,601...73,999,791 		JBrowse link
G Nkx2-6 NK2 homeobox 6 acts_upstream_of_or_within
involved_in		 ISO (PMID:9621431)
(MGI:1267297|PMID:9621431)		 RGD PMID:9621431 MGI:1267297 NCBI chr15:44,443,151...44,447,248
Ensembl chr15:44,443,101...44,447,247 		JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO (PMID:20512159) RGD PMID:20512159 NCBI chr13:39,355,698...39,429,154
Ensembl chr13:39,352,247...39,429,169 		JBrowse link
G Rax retina and anterior neural fold homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1856862 (MGI:54368|PMID:925203)		 Ensembl
RGD		 PMID:925203 GO_REF:0000107 MGI:54368 NCBI chr18:59,463,737...59,467,431
Ensembl chr18:59,463,737...59,467,431 		JBrowse link
G Reln reelin IEP RGD PMID:10436054 RGD:634730 NCBI chr 4:12,736,177...13,162,956
Ensembl chr 4:12,736,130...13,162,211 		JBrowse link
G Sox3 SRY-box transcription factor 3 involved_in ISO (MGI:3033563|PMID:14981518) RGD PMID:14981518 MGI:3033563 NCBI chr  X:139,308,608...139,310,734
Ensembl chr  X:139,309,329...139,310,678 		JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 IEP RGD PMID:15804399 PMID:8770891 RGD:4891928, RGD:4892048 NCBI chr 1:33,686,069...33,720,468
Ensembl chr 1:33,686,391...33,720,461 		JBrowse link
G Srd5a2 steroid 5 alpha-reductase 2 IEP RGD PMID:15804399 RGD:4891928 NCBI chr 6:21,426,225...21,465,727
Ensembl chr 6:21,426,215...21,462,112 		JBrowse link
G Uqcrq ubiquinol-cytochrome c reductase, complex III subunit VII acts_upstream_of_or_within
involved_in		 ISO (PMID:16901643)
(MGI:3662936|PMID:16901643)		 RGD PMID:16901643 MGI:3662936 NCBI chr10:37,585,864...37,589,328
Ensembl chr10:37,586,888...37,589,169 		JBrowse link
hypothalamus gonadotrophin-releasing hormone neuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nhlh2 nescient helix loop helix 2 acts_upstream_of_or_within_positive_effect ISO (MGI:5504302|PMID:23785158) RGD PMID:23785158 MGI:5504302 NCBI chr 2:189,444,287...189,449,625
Ensembl chr 2:189,442,711...189,449,625 		JBrowse link
G Ubb ubiquitin B acts_upstream_of_or_within ISO MGI:3774112 (MGI:3776935|PMID:18299572) RGD PMID:18299572 MGI:3776935 NCBI chr10:47,247,629...47,249,335
Ensembl chr10:47,245,637...47,249,333 		JBrowse link
mammillary axonal complex development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO MGI:2387499|MGI:2668659 (MGI:5629993|PMID:25741725) RGD PMID:25741725 MGI:5629993 NCBI chr 3:29,219,765...29,342,094
Ensembl chr 3:29,218,301...29,345,157 		JBrowse link
mammillary body development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxb1 forkhead box B1 acts_upstream_of_or_within
involved_in		 ISO (PMID:11170346)
(MGI:1931655|PMID:11170346), (MGI:3589689|PMID:15654859)
(MGI:3589689|PMID:15654859)		 RGD PMID:11170346 PMID:15654859 MGI:1931655 MGI:3589689 NCBI chr 8:70,407,221...70,409,841
Ensembl chr 8:70,408,186...70,409,781 		JBrowse link
mammillothalamic axonal tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxb1 forkhead box B1 involved_in ISO (MGI:1352733|PMID:10662642), (MGI:1931655|PMID:11170346) RGD PMID:10662642 PMID:11170346 MGI:1352733 MGI:1931655 NCBI chr 8:70,407,221...70,409,841
Ensembl chr 8:70,408,186...70,409,781 		JBrowse link
nucleus accumbens development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3512079 (MGI:3701419|PMID:17207476)		 Ensembl
RGD		 PMID:17207476 GO_REF:0000107 MGI:3701419 NCBI chr 1:119,982,272...120,017,416
Ensembl chr 1:119,982,277...120,017,436 		JBrowse link
orbitofrontal cortex development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arpc5 actin related protein 2/3 complex, subunit 5 IEP RGD PMID:23459330 RGD:11049475 NCBI chr13:64,904,504...64,913,413
Ensembl chr13:64,887,136...64,913,410 		JBrowse link
G Drd1 dopamine receptor D1 IEP RGD PMID:22015925 RGD:7248608 NCBI chr17:10,540,440...10,544,971
Ensembl chr17:10,540,558...10,545,002 		JBrowse link
G Drd2 dopamine receptor D2 IEP RGD PMID:22015925 RGD:7248608 NCBI chr 8:49,708,903...49,772,888
Ensembl chr 8:49,708,927...49,772,875 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 involved_in ISO (MGI:4452541|PMID:20410112) RGD PMID:20410112 MGI:4452541 NCBI chr16:66,492,445...66,546,731
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 involved_in ISO (MGI:4452541|PMID:20410112) RGD PMID:20410112 MGI:4452541 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Reln reelin IEP RGD PMID:20035841 RGD:2317761 NCBI chr 4:12,736,177...13,162,956
Ensembl chr 4:12,736,130...13,162,211 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19898
    multicellular organismal process 9260
      multicellular organism development 5242
        system development 4503
          limbic system development 169
            amygdala development 7
            cingulate gyrus development 0
            hippocampus development + 130
            hypothalamus development + 36
            mammillary body development + 2
            nucleus accumbens development 1
            orbitofrontal cortex development + 6
            parahippocampal gyrus development 0
Path 2
Term Annotations click to browse term
  biological_process 19898
    developmental process 7021
      anatomical structure development 6456
        multicellular organism development 5242
          system development 4503
            nervous system development 2813
              central nervous system development 1324
                brain development 1021
                  forebrain development 542
                    limbic system development 169
                      amygdala development 7
                      cingulate gyrus development 0
                      hippocampus development + 130
                      hypothalamus development + 36
                      mammillary body development + 2
                      nucleus accumbens development 1
                      orbitofrontal cortex development + 6
                      parahippocampal gyrus development 0
paths to the root