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ONTOLOGY REPORT - ANNOTATIONS

Term:cerebellar cortex formation
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Accession:GO:0021697 term browser browse the term
Definition:The process that gives rise to the cerebellar cortex. This process pertains to the initial formation of a structure from unspecified parts. The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function.


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cerebellar cortex formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK5 cyclin dependent kinase 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10407039) Ensembl
MGI		 PMID:10407039 GO_REF:0000107 NCBI chr16:15,105,177...15,113,085
Ensembl chr16:15,101,230...15,109,269 		JBrowse link
G MAP2K1 mitogen-activated protein kinase kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24431450) Ensembl
MGI		 PMID:24431450 GO_REF:0000107 NCBI chr30:30,683,192...30,760,479
Ensembl chr30:30,683,107...30,760,479 		JBrowse link
G PTPN11 protein tyrosine phosphatase non-receptor type 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24431450) Ensembl
MGI		 PMID:24431450 GO_REF:0000107 NCBI chr26:9,989,218...10,072,245
Ensembl chr26:9,989,425...10,067,481 		JBrowse link
cerebellar granule cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP2B2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (PMID:9668038) MGI PMID:9668038 NCBI chr20:7,665,468...8,037,407
Ensembl chr20:7,749,807...8,034,474 		JBrowse link
G CBLN1 cerebellin 1 precursor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:65,974,989...65,978,464
Ensembl chr 2:65,974,981...65,977,179 		JBrowse link
G GRID2 glutamate ionotropic receptor delta type subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr32:15,322,256...16,787,966
Ensembl chr32:15,322,738...16,753,656 		JBrowse link
G KNDC1 kinase non-catalytic C-lobe domain containing 1 acts_upstream_of_or_within ISO (PMID:17984326) MGI PMID:17984326 NCBI chr28:40,757,950...40,790,603 JBrowse link
G MTPN myotrophin ISO RGD PMID:8144589 RGD:632797 NCBI chr16:12,316,487...12,369,148
Ensembl chr16:12,316,336...12,369,387 		JBrowse link
G NFIX nuclear factor I X acts_upstream_of_or_within
involved_in		 ISO (PMID:21800304)
(PMID:23042739)		 MGI PMID:21800304 PMID:23042739 NCBI chr20:49,117,087...49,187,023
Ensembl chr20:49,117,943...49,214,788 		JBrowse link
G NRXN1 neurexin 1 involved_in ISO (MGI:4839424|PMID:20537373) BHF-UCL PMID:20537373 MGI:4839424 NCBI chr10:51,555,660...52,666,774
Ensembl chr10:51,558,452...52,667,569 		JBrowse link
G OPHN1 oligophrenin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:52,418,390...52,983,155
Ensembl chr  X:52,455,373...52,982,244 		JBrowse link
G PROX1 prospero homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:11,996,282...12,047,693
Ensembl chr 7:11,996,703...12,044,036 		JBrowse link
G TOP2A DNA topoisomerase II alpha ISO RGD PMID:11170002 RGD:8693630 NCBI chr 9:22,207,501...22,237,497
Ensembl chr 9:22,207,638...22,237,496 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 acts_upstream_of_or_within ISO (PMID:10624947) MGI PMID:10624947 NCBI chr26:968,714...982,244
Ensembl chr26:970,138...982,229 		JBrowse link
G WNT7A Wnt family member 7A acts_upstream_of_or_within ISO (PMID:9405095) MGI PMID:9405095 NCBI chr20:4,072,010...4,139,521
Ensembl chr20:4,073,929...4,139,436 		JBrowse link
cerebellar molecular layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DLL1 delta like canonical Notch ligand 1 involved_in ISO (MGI:5504540|PMID:23688253) UniProt PMID:23688253 MGI:5504540 NCBI chr12:72,265,078...72,272,347
Ensembl chr12:72,265,682...72,272,348 		JBrowse link
cerebellar Purkinje cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGTPBP1 ATP/GTP binding carboxypeptidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:73,853,491...74,030,075
Ensembl chr 1:73,887,934...74,107,312 		JBrowse link
G ATP2B2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (PMID:9668038) MGI PMID:9668038 NCBI chr20:7,665,468...8,037,407
Ensembl chr20:7,749,807...8,034,474 		JBrowse link
G ATP7A ATPase copper transporting alpha acts_upstream_of_or_within ISO (PMID:2473662) MGI PMID:2473662 NCBI chr  X:60,203,336...60,356,525
Ensembl chr  X:60,203,270...60,352,869 		JBrowse link
G ATXN2 ataxin 2 acts_upstream_of_or_within ISO (PMID:10973246) MGI PMID:10973246 NCBI chr26:9,073,667...9,188,429
Ensembl chr26:9,073,809...9,188,414 		JBrowse link
G CACNA1A calcium voltage-gated channel subunit alpha1 A acts_upstream_of_or_within ISO (PMID:1306163)
(PMID:10630211)
(PMID:7834360)		 MGI PMID:1306163 PMID:7834360 PMID:10630211 NCBI chr20:48,747,087...49,036,627
Ensembl chr20:48,821,025...49,036,032 		JBrowse link
G CEND1 cell cycle exit and neuronal differentiation 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20153830) Ensembl
MGI
TreeGrafter		 PMID:20153830 GO_REF:0000107 GO_REF:0000118 NCBI chr18:25,782,012...25,783,897 JBrowse link
G FAIM2 Fas apoptotic inhibitory molecule 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:4,802,711...4,831,230
Ensembl chr27:4,798,235...4,827,917 		JBrowse link
G FOXP2 forkhead box P2 involved_in ISO (PMID:22133810) MGI PMID:22133810 NCBI chr14:53,311,214...53,864,056
Ensembl chr14:53,312,045...53,862,655 		JBrowse link
G HERC1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20041218) Ensembl
MGI		 PMID:20041218 GO_REF:0000107 NCBI chr30:28,195,296...28,379,343
Ensembl chr30:28,195,673...28,379,444 		JBrowse link
G LDB1 LIM domain binding 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17664423) Ensembl
MGI		 PMID:17664423 GO_REF:0000107 NCBI chr28:14,646,409...14,658,324
Ensembl chr28:14,646,056...14,658,548 		JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17664423) Ensembl
MGI		 PMID:17664423 GO_REF:0000107 NCBI chr 9:36,760,890...36,768,345
Ensembl chr 9:36,761,826...36,768,164 		JBrowse link
G LHX5 LIM homeobox 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17664423) Ensembl
MGI		 PMID:17664423 GO_REF:0000107 NCBI chr26:10,776,991...10,785,820
Ensembl chr26:10,777,242...10,785,815 		JBrowse link
G PSAP prosaposin acts_upstream_of_or_within ISO (PMID:15345707) MGI PMID:15345707 NCBI chr 4:22,571,095...22,603,880
Ensembl chr 4:22,572,153...22,603,848 		JBrowse link
G RORA RAR related orphan receptor A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8996814) Ensembl
MGI		 PMID:8996814 GO_REF:0000107 NCBI chr30:25,315,974...26,026,708
Ensembl chr30:25,325,275...26,026,623 		JBrowse link
G SKOR2 SKI family transcriptional corepressor 2 acts_upstream_of_or_within ISO (PMID:21937600)
(PMID:24491816)		 MGI PMID:21937600 PMID:24491816 NCBI chr 7:44,250,822...44,289,737 JBrowse link
G SLC25A46 solute carrier family 25 member 46 acts_upstream_of_or_within ISO (PMID:28934388) MGI PMID:28934388 NCBI chr 3:1,700,310...1,715,841
Ensembl chr 3:1,702,905...1,756,025 		JBrowse link
G TOP2A DNA topoisomerase II alpha ISO RGD PMID:11170002 RGD:8693630 NCBI chr 9:22,207,501...22,237,497
Ensembl chr 9:22,207,638...22,237,496 		JBrowse link
G TTC21B tetratricopeptide repeat domain 21B acts_upstream_of_or_within ISO (PMID:29615573) MGI PMID:29615573 NCBI chr36:11,009,362...11,086,586
Ensembl chr36:11,010,296...11,086,674 		JBrowse link
G TTLL1 TTL family tubulin polyglutamylase complex subunit L1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:30420556) Ensembl
MGI		 PMID:30420556 GO_REF:0000107 NCBI chr10:22,456,150...22,492,375
Ensembl chr10:22,456,146...22,488,505 		JBrowse link
cerebellar Purkinje cell layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GBA1 glucosylceramidase beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17954912) Ensembl
MGI		 PMID:17954912 GO_REF:0000107 NCBI chr 7:42,317,704...42,322,285
Ensembl chr 7:42,317,862...42,322,864 		JBrowse link
G WHRN whirlin involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:68,617,383...68,699,824
Ensembl chr11:68,617,377...68,699,977 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17878
    developmental process 6855
      anatomical structure formation involved in morphogenesis 1370
        cerebellar cortex formation 35
          Lugaro cell differentiation 0
          cerebellar Purkinje cell layer formation + 21
          cerebellar granular layer formation + 12
          cerebellar molecular layer formation + 1
          eurydendroid cell differentiation 0
Path 2
Term Annotations click to browse term
  biological_process 17878
    developmental process 6855
      anatomical structure development 6433
        multicellular organism development 5182
          system development 4509
            nervous system development 2787
              central nervous system development 1203
                brain development 900
                  hindbrain development 230
                    metencephalon development 177
                      cerebellum development 163
                        cerebellum morphogenesis 61
                          cerebellar cortex morphogenesis 50
                            cerebellar cortex formation 35
                              Lugaro cell differentiation 0
                              cerebellar Purkinje cell layer formation + 21
                              cerebellar granular layer formation + 12
                              cerebellar molecular layer formation + 1
                              eurydendroid cell differentiation 0
paths to the root