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ONTOLOGY REPORT - ANNOTATIONS

Term:cranial nerve morphogenesis
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Accession:GO:0021602 term browser browse the term
Definition:The process in which the anatomical structure of the cranial nerves are generated and organized. The cranial nerves are composed of twelve pairs of nerves that emanate from the nervous tissue of the hindbrain. These nerves are sensory, motor, or mixed in nature, and provide the motor and general sensory innervation of the head, neck and viscera. They mediate vision, hearing, olfaction and taste and carry the parasympathetic innervation of the autonomic ganglia that control visceral functions.


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cranial nerve morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11694877) Ensembl
MGI		 PMID:11694877 GO_REF:0000107 NCBI chr 1:31,522,911...31,525,342
Ensembl chr 1:31,523,799...31,524,995 		JBrowse link
G PLXNA4 plexin A4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15814794) Ensembl
MGI		 PMID:15814794 GO_REF:0000107 NCBI chr14:4,683,569...5,110,113
Ensembl chr14:4,680,882...5,103,050 		JBrowse link
abducens nerve formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOXA1 homeobox A1 involved_in ISO (PMID:16155570) DFLAT PMID:16155570 NCBI chr14:40,267,033...40,272,212
Ensembl chr14:40,267,528...40,269,681 		JBrowse link
G MAFB MAF bZIP transcription factor B involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:28,769,904...28,772,519
Ensembl chr24:28,770,944...28,774,948 		JBrowse link
facial nerve morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADARB1 adenosine deaminase RNA specific B1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20826656) Ensembl
MGI		 PMID:20826656 GO_REF:0000107 NCBI chr31:38,715,529...38,799,353
Ensembl chr31:38,678,184...38,796,521 		JBrowse link
G PLXNA4 plexin A4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15814794) Ensembl
MGI		 PMID:15814794 GO_REF:0000107 NCBI chr14:4,683,569...5,110,113
Ensembl chr14:4,680,882...5,103,050 		JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12874121) Ensembl
MGI		 PMID:12874121 GO_REF:0000107 NCBI chr 8:35,676,705...35,679,534
Ensembl chr 8:35,676,479...35,679,534 		JBrowse link
facial nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EGR2 early growth response 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9806922) Ensembl
MGI		 PMID:9806922 GO_REF:0000107 NCBI chr 4:14,705,384...14,810,130
Ensembl chr 4:14,706,600...14,709,497 		JBrowse link
G HOXA1 homeobox A1 acts_upstream_of_or_within ISO (PMID:9806922) MGI PMID:9806922 NCBI chr14:40,267,033...40,272,212
Ensembl chr14:40,267,528...40,269,681 		JBrowse link
G HOXB1 homeobox B1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8898234) Ensembl
MGI		 PMID:8898234 GO_REF:0000107 NCBI chr 9:24,791,848...24,795,443
Ensembl chr 9:24,792,889...24,794,302 		JBrowse link
G HOXB2 homeobox B2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9012503) Ensembl
MGI		 PMID:9012503 GO_REF:0000107 NCBI chr 9:24,803,996...24,810,109
Ensembl chr 9:24,804,426...24,806,614 		JBrowse link
G NRP1 neuropilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:3,416,062...3,553,929
Ensembl chr 2:3,413,821...3,552,483 		JBrowse link
G NRP2 neuropilin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr37:14,293,545...14,408,984
Ensembl chr37:14,293,614...14,406,949 		JBrowse link
G PLXNA3 plexin A3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:122,165,460...122,180,727
Ensembl chr  X:122,167,144...122,180,951 		JBrowse link
G PLXNA4 plexin A4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:4,683,569...5,110,113
Ensembl chr14:4,680,882...5,103,050 		JBrowse link
G SEMA3A semaphorin 3A involved_in ISO (MGI:3822054|PMID:18804103) ParkinsonsUK-UCL PMID:18804103 MGI:3822054 NCBI chr18:23,411,607...23,866,631
Ensembl chr18:23,414,576...23,867,098 		JBrowse link
G SEMA3F semaphorin 3F involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:39,135,580...39,165,381
Ensembl chr20:39,136,523...39,161,325 		JBrowse link
glossopharyngeal nerve morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOXA3 homeobox A3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9441667) Ensembl
MGI		 PMID:9441667 GO_REF:0000107 NCBI chr14:40,280,866...40,326,559
Ensembl chr14:40,280,861...40,296,147 		JBrowse link
G HOXB3 homeobox B3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9441667) Ensembl
MGI		 PMID:9441667 GO_REF:0000107 NCBI chr 9:24,810,299...24,837,434
Ensembl chr 9:24,809,739...24,836,058 		JBrowse link
G HOXD3 homeobox D3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9441667) Ensembl
MGI		 PMID:9441667 GO_REF:0000107 NCBI chr36:19,961,393...19,981,672
Ensembl chr36:19,960,761...19,980,525 		JBrowse link
G PLXNA4 plexin A4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15814794) Ensembl
MGI		 PMID:15814794 GO_REF:0000107 NCBI chr14:4,683,569...5,110,113
Ensembl chr14:4,680,882...5,103,050 		JBrowse link
hypoglossal nerve morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADARB1 adenosine deaminase RNA specific B1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20826656) Ensembl
MGI		 PMID:20826656 GO_REF:0000107 NCBI chr31:38,715,529...38,799,353
Ensembl chr31:38,678,184...38,796,521 		JBrowse link
oculomotor nerve formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHOX2A paired like homeobox 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:25,895,628...25,900,338
Ensembl chr21:25,892,321...25,900,351 		JBrowse link
G TFAP2A transcription factor AP-2 alpha involved_in ISO (MGI:80519|PMID:8622766) UniProt PMID:8622766 MGI:80519 NCBI chr35:10,157,043...10,180,484
Ensembl chr35:10,157,882...10,180,270 		JBrowse link
olfactory nerve formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLXNA1 plexin A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:1,143,072...1,186,623
Ensembl chr20:870,870...1,184,321 		JBrowse link
G PLXNA3 plexin A3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:122,165,460...122,180,727
Ensembl chr  X:122,167,144...122,180,951 		JBrowse link
olfactory nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DMD dystrophin acts_upstream_of_or_within ISO (PMID:18586242) MGI PMID:18586242 NCBI chr  X:26,290,903...28,444,635
Ensembl chr  X:26,290,910...28,333,576 		JBrowse link
optic nerve morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRNB2 cholinergic receptor nicotinic beta 2 subunit acts_upstream_of_or_within ISO (PMID:12097474)
(PMID:11344259)		 MGI PMID:11344259 PMID:12097474 NCBI chr 7:42,786,505...42,797,976
Ensembl chr 7:42,789,600...42,795,722 		JBrowse link
G EPHB1 EPH receptor B1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12971893) Ensembl
MGI		 PMID:12971893 GO_REF:0000107 NCBI chr23:31,485,701...31,918,754
Ensembl chr23:31,485,534...31,917,393 		JBrowse link
G EPHB2 EPH receptor B2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12971893) Ensembl
MGI		 PMID:12971893 GO_REF:0000107 NCBI chr 2:76,427,112...76,551,494
Ensembl chr 2:76,428,203...76,612,786 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16342201) Ensembl
MGI		 PMID:16342201 GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132 		JBrowse link
G PAX2 paired box 2 involved_in ISO (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chr28:13,442,894...13,519,853
Ensembl chr28:13,442,893...13,532,094 		JBrowse link
optic nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KCNA2 potassium voltage-gated channel subfamily A member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15102918) Ensembl
MGI		 PMID:15102918 GO_REF:0000107 NCBI chr 6:41,405,453...41,415,727
Ensembl chr 6:41,407,070...41,408,823 		JBrowse link
G PAX2 paired box 2 involved_in ISO (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chr28:13,442,894...13,519,853
Ensembl chr28:13,442,893...13,532,094 		JBrowse link
positive regulation of optic nerve formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAX2 paired box 2 involved_in ISO (MGI:5009386|PMID:18083586) UniProt PMID:18083586 MGI:5009386 NCBI chr28:13,442,894...13,519,853
Ensembl chr28:13,442,893...13,532,094 		JBrowse link
trigeminal nerve morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NRP1 neuropilin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15814794) Ensembl
MGI		 PMID:15814794 GO_REF:0000107 NCBI chr 2:3,416,062...3,553,929
Ensembl chr 2:3,413,821...3,552,483 		JBrowse link
G PLXNA4 plexin A4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15814794) Ensembl
MGI		 PMID:15814794 GO_REF:0000107 NCBI chr14:4,683,569...5,110,113
Ensembl chr14:4,680,882...5,103,050 		JBrowse link
trigeminal nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NRP1 neuropilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:3,416,062...3,553,929
Ensembl chr 2:3,413,821...3,552,483 		JBrowse link
G PLXNA3 plexin A3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:122,165,460...122,180,727
Ensembl chr  X:122,167,144...122,180,951 		JBrowse link
G PLXNA4 plexin A4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:4,683,569...5,110,113
Ensembl chr14:4,680,882...5,103,050 		JBrowse link
G SEMA3A semaphorin 3A involved_in ISO (MGI:3822054|PMID:18804103) ParkinsonsUK-UCL PMID:18804103 MGI:3822054 NCBI chr18:23,411,607...23,866,631
Ensembl chr18:23,414,576...23,867,098 		JBrowse link
G SEMA3F semaphorin 3F involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:39,135,580...39,165,381
Ensembl chr20:39,136,523...39,161,325 		JBrowse link
trochlear nerve formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHOX2A paired like homeobox 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:25,895,628...25,900,338
Ensembl chr21:25,892,321...25,900,351 		JBrowse link
vagus nerve morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLXNA4 plexin A4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15814794) Ensembl
MGI		 PMID:15814794 GO_REF:0000107 NCBI chr14:4,683,569...5,110,113
Ensembl chr14:4,680,882...5,103,050 		JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:20939858) MGI PMID:20939858 NCBI chr26:29,529,071...29,533,240
Ensembl chr26:29,528,878...29,532,784 		JBrowse link
vestibulocochlear nerve formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP8B1 ATPase phospholipid transporting 8B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:18,156,664...18,279,131
Ensembl chr 1:18,156,410...18,277,904 		JBrowse link
G NEUROG1 neurogenin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:23,563,128...23,564,819
Ensembl chr11:23,563,803...23,564,543 		JBrowse link
G PAX2 paired box 2 involved_in ISO (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chr28:13,442,894...13,519,853
Ensembl chr28:13,442,893...13,532,094 		JBrowse link
G TIFAB TIFA inhibitor involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:23,492,317...23,495,825
Ensembl chr11:23,492,867...23,493,352 		JBrowse link
vestibulocochlear nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NRP1 neuropilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:3,416,062...3,553,929
Ensembl chr 2:3,413,821...3,552,483 		JBrowse link
G NRP2 neuropilin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr37:14,293,545...14,408,984
Ensembl chr37:14,293,614...14,406,949 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17878
    developmental process 6855
      anatomical structure morphogenesis 3012
        cranial nerve morphogenesis 31
          abducens nerve morphogenesis + 2
          accessory nerve morphogenesis + 0
          cranial ganglion morphogenesis + 0
          cranial nerve formation + 10
          cranial nerve structural organization + 13
          facial nerve morphogenesis + 12
          glossopharyngeal nerve morphogenesis + 4
          hypoglossal nerve morphogenesis + 1
          oculomotor nerve morphogenesis + 2
          olfactory nerve morphogenesis + 3
          optic nerve morphogenesis + 6
          trigeminal nerve morphogenesis + 5
          trochlear nerve morphogenesis + 1
          vagus nerve morphogenesis + 2
          vestibulocochlear nerve morphogenesis + 6
Path 2
Term Annotations click to browse term
  biological_process 17878
    developmental process 6855
      anatomical structure development 6433
        multicellular organism development 5182
          system development 4509
            nervous system development 2787
              nerve development 122
                cranial nerve development 76
                  cranial nerve morphogenesis 31
                    abducens nerve morphogenesis + 2
                    accessory nerve morphogenesis + 0
                    cranial ganglion morphogenesis + 0
                    cranial nerve formation + 10
                    cranial nerve structural organization + 13
                    facial nerve morphogenesis + 12
                    glossopharyngeal nerve morphogenesis + 4
                    hypoglossal nerve morphogenesis + 1
                    oculomotor nerve morphogenesis + 2
                    olfactory nerve morphogenesis + 3
                    optic nerve morphogenesis + 6
                    trigeminal nerve morphogenesis + 5
                    trochlear nerve morphogenesis + 1
                    vagus nerve morphogenesis + 2
                    vestibulocochlear nerve morphogenesis + 6
paths to the root