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ONTOLOGY REPORT - ANNOTATIONS


Term:cranial nerve morphogenesis
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Accession:GO:0021602 term browser browse the term
Definition:The process in which the anatomical structure of the cranial nerves are generated and organized. The cranial nerves are composed of twelve pairs of nerves that emanate from the nervous tissue of the hindbrain. These nerves are sensory, motor, or mixed in nature, and provide the motor and general sensory innervation of the head, neck and viscera. They mediate vision, hearing, olfaction and taste and carry the parasympathetic innervation of the autonomic ganglia that control visceral functions.


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cranial nerve morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (MGI:2179743|PMID:11694877) MGI PMID:11694877 MGI:2179743 NCBI chrNW_004955436:20,370,950...20,372,677
Ensembl chrNW_004955436:20,370,950...20,372,677
JBrowse link
G Plxna4 plexin A4 acts_upstream_of_or_within ISO (MGI:3578029|PMID:15814794) MGI PMID:15814794 MGI:3578029 NCBI chrNW_004955410:35,281,042...35,714,094
Ensembl chrNW_004955410:35,281,648...35,713,453
JBrowse link
abducens nerve formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) DFLAT PMID:16155570 NCBI chrNW_004955410:28,788,245...28,790,971
Ensembl chrNW_004955410:28,787,817...28,790,962
JBrowse link
G Mafb MAF bZIP transcription factor B involved_in ISO (MGI:5816405|PMID:27181683) UniProt PMID:27181683 MGI:5816405 NCBI chrNW_004955445:16,219,675...16,222,913 JBrowse link
facial nerve morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adarb1 adenosine deaminase RNA specific B1 acts_upstream_of_or_within ISO (MGI:4831065|PMID:20826656) MGI PMID:20826656 MGI:4831065 NCBI chrNW_004955407:41,886,286...41,962,846
Ensembl chrNW_004955407:41,886,286...41,962,897
JBrowse link
G Plxna4 plexin A4 acts_upstream_of_or_within ISO (MGI:3578029|PMID:15814794) MGI PMID:15814794 MGI:3578029 NCBI chrNW_004955410:35,281,042...35,714,094
Ensembl chrNW_004955410:35,281,648...35,713,453
JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO (MGI:2671031|PMID:12874121) MGI PMID:12874121 MGI:2671031 NCBI chrNW_004955466:8,961,597...8,966,069
Ensembl chrNW_004955466:8,961,597...8,966,069
JBrowse link
facial nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 acts_upstream_of_or_within
involved_in
ISO (MGI:1306866|PMID:9806922)
(MGI:1331140|PMID:10068633), (MGI:69122|PMID:7935840)
MGI
UniProt
PMID:7935840 PMID:9806922 PMID:10068633 MGI:1306866 MGI:1331140 MGI:69122 NCBI chrNW_004955425:16,055,748...16,068,429
Ensembl chrNW_004955425:16,055,748...16,060,048
JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO (MGI:1306866|PMID:9806922) MGI PMID:9806922 MGI:1306866 NCBI chrNW_004955410:28,788,245...28,790,971
Ensembl chrNW_004955410:28,787,817...28,790,962
JBrowse link
G Hoxb1 homeobox B1 acts_upstream_of_or_within ISO (MGI:83677|PMID:8898234) MGI PMID:8898234 MGI:83677 NCBI chrNW_004955451:12,707,560...12,708,950
Ensembl chrNW_004955451:12,707,462...12,709,899
JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within ISO (MGI:85074|PMID:9012503) MGI PMID:9012503 MGI:85074 NCBI chrNW_004955451:12,693,764...12,697,825
Ensembl chrNW_004955451:12,694,868...12,697,846
JBrowse link
G Nrp1 neuropilin 1 involved_in ISO (MGI:3788968|PMID:18356247), (MGI:3822054|PMID:18804103) ParkinsonsUK-UCL PMID:18356247 PMID:18804103 MGI:3788968 MGI:3822054 NCBI chrNW_004955462:4,101,997...4,241,012
Ensembl chrNW_004955462:4,101,999...4,241,012
JBrowse link
G Nrp2 neuropilin 2 involved_in ISO (MGI:3788968|PMID:18356247) ParkinsonsUK-UCL PMID:18356247 MGI:3788968 NCBI chrNW_004955457:9,197,621...9,316,789
Ensembl chrNW_004955457:9,197,405...9,316,787
JBrowse link
G Plxna3 plexin A3 involved_in ISO (MGI:3822054|PMID:18804103) ParkinsonsUK-UCL PMID:18804103 MGI:3822054 NCBI chrNW_004955580:958,033...972,123
Ensembl chrNW_004955580:957,860...972,772
JBrowse link
G Plxna4 plexin A4 involved_in ISO (MGI:3822054|PMID:18804103) ParkinsonsUK-UCL PMID:18804103 MGI:3822054 NCBI chrNW_004955410:35,281,042...35,714,094
Ensembl chrNW_004955410:35,281,648...35,713,453
JBrowse link
G Sema3a semaphorin 3A involved_in ISO (MGI:3822054|PMID:18804103) ParkinsonsUK-UCL PMID:18804103 MGI:3822054 NCBI chrNW_004955410:2,146,088...2,344,342
Ensembl chrNW_004955410:2,144,388...2,338,973
JBrowse link
G Sema3f semaphorin 3F involved_in ISO (MGI:3822054|PMID:18804103) ParkinsonsUK-UCL PMID:18804103 MGI:3822054 NCBI chrNW_004955532:1,992,417...2,015,879
Ensembl chrNW_004955532:1,988,486...2,017,170
JBrowse link
glossopharyngeal nerve morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa3 homeobox A3 acts_upstream_of_or_within ISO (MGI:1195045|PMID:9441667) MGI PMID:9441667 MGI:1195045 NCBI chrNW_004955410:28,801,918...28,846,605
Ensembl chrNW_004955410:28,800,139...28,834,429
JBrowse link
G Hoxb3 homeobox B3 acts_upstream_of_or_within ISO (MGI:1195045|PMID:9441667) MGI PMID:9441667 MGI:1195045 NCBI chrNW_004955451:12,651,229...12,690,941
Ensembl chrNW_004955451:12,687,364...12,689,511
JBrowse link
G Hoxd3 homeobox D3 acts_upstream_of_or_within ISO (MGI:1195045|PMID:9441667) MGI PMID:9441667 MGI:1195045 NCBI chrNW_004955403:20,489,663...20,496,021 JBrowse link
G Plxna4 plexin A4 acts_upstream_of_or_within ISO (MGI:3578029|PMID:15814794) MGI PMID:15814794 MGI:3578029 NCBI chrNW_004955410:35,281,042...35,714,094
Ensembl chrNW_004955410:35,281,648...35,713,453
JBrowse link
hypoglossal nerve morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adarb1 adenosine deaminase RNA specific B1 acts_upstream_of_or_within ISO (MGI:4831065|PMID:20826656) MGI PMID:20826656 MGI:4831065 NCBI chrNW_004955407:41,886,286...41,962,846
Ensembl chrNW_004955407:41,886,286...41,962,897
JBrowse link
oculomotor nerve formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phox2a paired like homeobox 2A involved_in ISO (MGI:1098916|PMID:9374403) BHF-UCL PMID:9374403 MGI:1098916 NCBI chrNW_004955414:19,141,589...19,145,486
Ensembl chrNW_004955414:19,141,589...19,145,486
JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISO (MGI:80519|PMID:8622766) UniProt PMID:8622766 MGI:80519 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929
JBrowse link
olfactory nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmd dystrophin acts_upstream_of_or_within ISO (MGI:3805594|PMID:18586242) MGI PMID:18586242 MGI:3805594 NCBI chrNW_004955535:1,283,084...3,297,015
Ensembl chrNW_004955535:1,283,523...3,299,542
JBrowse link
optic nerve morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrnb2 cholinergic receptor nicotinic beta 2 subunit acts_upstream_of_or_within ISO (MGI:2181503|PMID:11344259)
(MGI:3721829|PMID:12097474)
MGI PMID:11344259 PMID:12097474 MGI:2181503 MGI:3721829 NCBI chrNW_004955545:1,065,457...1,077,056
Ensembl chrNW_004955545:1,065,457...1,077,526
JBrowse link
G Ephb1 EPH receptor B1 acts_upstream_of_or_within ISO (MGI:2675767|PMID:12971893) MGI PMID:12971893 MGI:2675767 NCBI chrNW_004955501:3,424,112...3,821,727
Ensembl chrNW_004955501:3,423,977...3,821,890
JBrowse link
G Ephb2 EPH receptor B2 acts_upstream_of_or_within ISO (MGI:2675767|PMID:12971893) MGI PMID:12971893 MGI:2675767 NCBI chrNW_004955452:2,844,713...2,986,790
Ensembl chrNW_004955452:2,844,713...2,980,445
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (MGI:3617688|PMID:16342201) MGI PMID:16342201 MGI:3617688 NCBI chrNW_004955460:1,528,457...1,805,584
Ensembl chrNW_004955460:1,528,412...1,805,918
JBrowse link
G Pax2 paired box 2 involved_in ISO (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chrNW_004955485:9,351,913...9,430,607
Ensembl chrNW_004955485:9,350,087...9,430,607
JBrowse link
optic nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kcna2 potassium voltage-gated channel subfamily A member 2 acts_upstream_of_or_within ISO (MGI:3042560|PMID:15102918) MGI PMID:15102918 MGI:3042560 NCBI chrNW_004955435:14,074,346...14,080,026
Ensembl chrNW_004955435:14,074,346...14,078,806
JBrowse link
G Pax2 paired box 2 involved_in ISO (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chrNW_004955485:9,351,913...9,430,607
Ensembl chrNW_004955485:9,350,087...9,430,607
JBrowse link
positive regulation of optic nerve formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISO (MGI:5009386|PMID:18083586) UniProt PMID:18083586 MGI:5009386 NCBI chrNW_004955485:9,351,913...9,430,607
Ensembl chrNW_004955485:9,350,087...9,430,607
JBrowse link
trigeminal nerve morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 acts_upstream_of_or_within ISO (MGI:3578029|PMID:15814794) MGI PMID:15814794 MGI:3578029 NCBI chrNW_004955462:4,101,997...4,241,012
Ensembl chrNW_004955462:4,101,999...4,241,012
JBrowse link
G Plxna4 plexin A4 acts_upstream_of_or_within ISO (MGI:3578029|PMID:15814794) MGI PMID:15814794 MGI:3578029 NCBI chrNW_004955410:35,281,042...35,714,094
Ensembl chrNW_004955410:35,281,648...35,713,453
JBrowse link
trigeminal nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 involved_in ISO (MGI:3822054|PMID:18804103) ParkinsonsUK-UCL PMID:18804103 MGI:3822054 NCBI chrNW_004955462:4,101,997...4,241,012
Ensembl chrNW_004955462:4,101,999...4,241,012
JBrowse link
G Plxna3 plexin A3 involved_in ISO (MGI:3822054|PMID:18804103) ParkinsonsUK-UCL PMID:18804103 MGI:3822054 NCBI chrNW_004955580:958,033...972,123
Ensembl chrNW_004955580:957,860...972,772
JBrowse link
G Plxna4 plexin A4 involved_in ISO (MGI:3822054|PMID:18804103) ParkinsonsUK-UCL PMID:18804103 MGI:3822054 NCBI chrNW_004955410:35,281,042...35,714,094
Ensembl chrNW_004955410:35,281,648...35,713,453
JBrowse link
G Sema3a semaphorin 3A involved_in ISO (MGI:3822054|PMID:18804103) ParkinsonsUK-UCL PMID:18804103 MGI:3822054 NCBI chrNW_004955410:2,146,088...2,344,342
Ensembl chrNW_004955410:2,144,388...2,338,973
JBrowse link
G Sema3f semaphorin 3F involved_in ISO (MGI:3822054|PMID:18804103) ParkinsonsUK-UCL PMID:18804103 MGI:3822054 NCBI chrNW_004955532:1,992,417...2,015,879
Ensembl chrNW_004955532:1,988,486...2,017,170
JBrowse link
trochlear nerve formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phox2a paired like homeobox 2A involved_in ISO (MGI:1098916|PMID:9374403) BHF-UCL PMID:9374403 MGI:1098916 NCBI chrNW_004955414:19,141,589...19,145,486
Ensembl chrNW_004955414:19,141,589...19,145,486
JBrowse link
vagus nerve morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plxna4 plexin A4 acts_upstream_of_or_within ISO (MGI:3578029|PMID:15814794) MGI PMID:15814794 MGI:3578029 NCBI chrNW_004955410:35,281,042...35,714,094
Ensembl chrNW_004955410:35,281,648...35,713,453
JBrowse link
G Tbx1 T-box transcription factor 1 acts_upstream_of_or_within ISO (MGI:4948210|PMID:20939858) MGI PMID:20939858 MGI:4948210 NCBI chrNW_004955442:18,320,674...18,327,062
Ensembl chrNW_004955442:18,319,762...18,325,337
JBrowse link
vestibulocochlear nerve formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp8b1 ATPase phospholipid transporting 8B1 involved_in ISO (MGI:3849653|PMID:19478059) UniProt PMID:19478059 MGI:3849653 NCBI chrNW_004955402:41,994,993...42,113,380
Ensembl chrNW_004955402:41,996,001...42,113,895
JBrowse link
G Neurog1 neurogenin 1 involved_in ISO (PMID:23419067) CAFA PMID:23419067 NCBI chrNW_004955408:30,693,893...30,695,453
Ensembl chrNW_004955408:30,694,496...30,695,221
JBrowse link
G Pax2 paired box 2 involved_in ISO (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chrNW_004955485:9,351,913...9,430,607
Ensembl chrNW_004955485:9,350,087...9,430,607
JBrowse link
vestibulocochlear nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 involved_in ISO (MGI:3788968|PMID:18356247) ParkinsonsUK-UCL PMID:18356247 MGI:3788968 NCBI chrNW_004955462:4,101,997...4,241,012
Ensembl chrNW_004955462:4,101,999...4,241,012
JBrowse link
G Nrp2 neuropilin 2 involved_in ISO (MGI:3788968|PMID:18356247) ParkinsonsUK-UCL PMID:18356247 MGI:3788968 NCBI chrNW_004955457:9,197,621...9,316,789
Ensembl chrNW_004955457:9,197,405...9,316,787
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11981
    developmental process 5685
      anatomical structure morphogenesis 2532
        cranial nerve morphogenesis 29
          abducens nerve morphogenesis + 2
          accessory nerve morphogenesis + 0
          cranial ganglion morphogenesis + 0
          cranial nerve formation + 7
          cranial nerve structural organization + 13
          facial nerve morphogenesis + 12
          glossopharyngeal nerve morphogenesis + 4
          hypoglossal nerve morphogenesis + 1
          oculomotor nerve morphogenesis + 2
          olfactory nerve morphogenesis + 1
          optic nerve morphogenesis + 6
          trigeminal nerve morphogenesis + 5
          trochlear nerve morphogenesis + 1
          vagus nerve morphogenesis + 2
          vestibulocochlear nerve morphogenesis + 5
Path 2
Term Annotations click to browse term
  biological_process 11981
    developmental process 5685
      anatomical structure development 5314
        multicellular organism development 4870
          system development 4587
            nervous system development 2381
              nerve development 90
                cranial nerve development 58
                  cranial nerve morphogenesis 29
                    abducens nerve morphogenesis + 2
                    accessory nerve morphogenesis + 0
                    cranial ganglion morphogenesis + 0
                    cranial nerve formation + 7
                    cranial nerve structural organization + 13
                    facial nerve morphogenesis + 12
                    glossopharyngeal nerve morphogenesis + 4
                    hypoglossal nerve morphogenesis + 1
                    oculomotor nerve morphogenesis + 2
                    olfactory nerve morphogenesis + 1
                    optic nerve morphogenesis + 6
                    trigeminal nerve morphogenesis + 5
                    trochlear nerve morphogenesis + 1
                    vagus nerve morphogenesis + 2
                    vestibulocochlear nerve morphogenesis + 5
paths to the root