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ONTOLOGY REPORT - ANNOTATIONS

Term:ventricular system development
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Accession:GO:0021591 term browser browse the term
Definition:The process whose specific outcome is the progression of the brain ventricular system over time, from its formation to the mature structure. The brain ventricular system consists of four communicating cavities within the brain that are continuous with the central canal of the spinal cord. These cavities include two lateral ventricles, the third ventricle and the fourth ventricle. Cerebrospinal fluid fills the ventricles and is produced by the choroid plexus.


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ventricular system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak8 adenylate kinase 8 acts_upstream_of_or_within ISO MGI:5429197 (MGI:5429171|PMID:21746835) RGD PMID:21746835 MGI:5429171 NCBI chr 3:12,028,895...12,144,468
Ensembl chr 3:12,028,954...12,144,465 		JBrowse link
G Anp32b acidic nuclear phosphoprotein 32 family member B acts_upstream_of_or_within ISO MGI:5003050 (MGI:5003056|PMID:21636789) RGD PMID:21636789 MGI:5003056 NCBI chr 5:60,743,077...60,765,726
Ensembl chr 5:60,743,443...60,765,717 		JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within ISO MGI:3767672|MGI:4837746|MGI:5474481 (MGI:5470340|PMID:23160237) RGD PMID:23160237 MGI:5470340 NCBI chr 1:202,184,812...202,204,118
Ensembl chr 1:202,186,125...202,204,086 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO MGI:3045473 (MGI:5604561|PMID:24695551) RGD PMID:24695551 MGI:5604561 NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607 		JBrowse link
G Ccdc134 coiled-coil domain containing 134 acts_upstream_of_or_within ISO MGI:6117856 (MGI:6112839|PMID:29115376) RGD PMID:29115376 MGI:6112839 NCBI chr 7:113,644,557...113,659,050
Ensembl chr 7:113,644,639...113,659,050 		JBrowse link
G Celsr2 cadherin, EGF LAG seven-pass G-type receptor 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:5429210 (MGI:5429171|PMID:21746835)
GO_REF:0000107		 RGD
Ensembl		 PMID:21746835 GO_REF:0000107 MGI:5429171 NCBI chr 2:196,029,206...196,053,848
Ensembl chr 2:196,029,434...196,053,845 		JBrowse link
G Cenpf centromere protein F involved_in ISO (PMID:25564561) RGD PMID:25564561 NCBI chr13:101,184,127...101,229,714
Ensembl chr13:101,184,127...101,229,669 		JBrowse link
G Dpcd deleted in primary ciliary dyskinesia acts_upstream_of_or_within ISO MGI:4262238 (MGI:5429171|PMID:21746835) RGD PMID:21746835 MGI:5429171 NCBI chr 1:244,408,710...244,426,891
Ensembl chr 1:244,408,785...244,426,888 		JBrowse link
G Hydin Hydin, axonemal central pair apparatus protein acts_upstream_of_or_within ISO MGI:1856913 (MGI:3793384|PMID:18250199), (MGI:53855|PMID:4732188) RGD PMID:4732188 PMID:18250199 MGI:3793384 MGI:53855 MGI:61244 MGI:61312 MGI:71926 NCBI chr19:38,236,996...38,583,271
Ensembl chr19:38,236,464...38,583,264 		JBrowse link
G Kif27 kinesin family member 27 acts_upstream_of_or_within ISO MGI:4318693 (MGI:5429171|PMID:21746835) RGD PMID:21746835 MGI:5429171 NCBI chr17:6,299,544...6,375,106
Ensembl chr17:6,299,569...6,369,768 		JBrowse link
G Mboat7 membrane bound O-acyltransferase domain containing 7 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:5429211 (MGI:5429171|PMID:21746835)
GO_REF:0000107		 RGD
Ensembl		 PMID:21746835 GO_REF:0000107 MGI:5429171 NCBI chr 1:65,525,206...65,539,538
Ensembl chr 1:65,525,213...65,539,538 		JBrowse link
G Mecp2 methyl CpG binding protein 2 acts_upstream_of_or_within ISO MGI:2158354 (MGI:3807442|PMID:18571096) RGD PMID:18571096 MGI:3807442 NCBI chr  X:151,781,177...151,844,687
Ensembl chr  X:151,789,930...151,844,689 		JBrowse link
G Mnat1 MNAT1 component of CDK activating kinase acts_upstream_of_or_within ISO MGI:3707001 (MGI:3770112|PMID:17276355) RGD PMID:17276355 MGI:3770112 NCBI chr 6:91,814,703...91,971,945
Ensembl chr 6:91,814,749...91,970,744 		JBrowse link
G Nme5 NME/NM23 family member 5 acts_upstream_of_or_within ISO MGI:5429195 (MGI:5429171|PMID:21746835) RGD PMID:21746835 MGI:5429171 NCBI chr18:26,163,558...26,180,742
Ensembl chr18:26,163,555...26,180,794 		JBrowse link
G Odad2 outer dynein arm docking complex subunit 2 acts_upstream_of_or_within ISO MGI:5311373 (MGI:5551687|PMID:23849778) RGD PMID:23849778 MGI:5551687 NCBI chr17:55,216,877...55,409,872
Ensembl chr17:55,218,991...55,409,399 		JBrowse link
G Rapgef2 Rap guanine nucleotide exchange factor 2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3757825|PMID:17826737)		 UniProt
RGD		 PMID:17826737 GO_REF:0000024 MGI:3757825 NCBI chr 2:164,207,513...164,322,157
Ensembl chr 2:164,207,513...164,244,247 		JBrowse link
G Sema6d semaphorin 6D acts_upstream_of_or_within ISO (MGI:3037225|PMID:14977921) RGD PMID:14977921 MGI:3037225 NCBI chr 3:111,883,415...111,941,100
Ensembl chr 3:111,883,872...111,941,094 		JBrowse link
G Slc7a11 solute carrier family 7 member 11 acts_upstream_of_or_within ISO MGI:1857061 (MGI:3664848|PMID:17035536) RGD PMID:17035536 MGI:3664848 NCBI chr 2:134,382,002...134,517,622
Ensembl chr 2:133,963,107...134,517,536 		JBrowse link
G Spag6l sperm associated antigen 6-like acts_upstream_of
involved_in		 ISO
IEA		 MGI:2662475 (MGI:2384449|PMID:12167721)
GO_REF:0000107		 RGD
Ensembl		 PMID:12167721 GO_REF:0000107 MGI:2384449 NCBI chr11:84,173,628...84,269,374
Ensembl chr11:84,173,526...84,269,364 		JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B acts_upstream_of_or_within ISO MGI:2152544 (MGI:4367927|PMID:19732765) RGD PMID:19732765 MGI:4367927 NCBI chr 3:50,861,367...50,935,782
Ensembl chr 3:50,861,367...50,935,903 		JBrowse link
G Ttn titin acts_upstream_of_or_within ISO MGI:3763610 (MGI:3760201|PMID:17360664) RGD PMID:17360664 MGI:3760201 NCBI chr 3:61,652,432...61,924,912
Ensembl chr 3:61,652,439...61,924,741 		JBrowse link
G Ulk4 unc-51 like kinase 4 acts_upstream_of_or_within ISO MGI:5429194 (MGI:5429171|PMID:21746835) RGD PMID:21746835 MGI:5429171 NCBI chr 8:120,670,879...120,966,026
Ensembl chr 8:120,670,866...120,966,924 		JBrowse link
fourth ventricle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm2b lysine demethylase 2B involved_in ISO (MGI:4949568|PMID:21220025) RGD PMID:21220025 MGI:4949568 NCBI chr12:33,566,530...33,701,366
Ensembl chr12:33,574,657...33,701,355 		JBrowse link
G Myh10 myosin heavy chain 10 acts_upstream_of_or_within ISO MGI:2386445|MGI:3664764 (MGI:1933038|PMID:11283949), (MGI:3656460|PMID:16481398) RGD PMID:11283949 PMID:16481398 MGI:1933038 MGI:3656460 NCBI chr10:53,393,901...53,525,174
Ensembl chr10:53,394,389...53,525,165 		JBrowse link
lateral ventricle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp1 aquaporin 1 involved_in
acts_upstream_of_or_within		 ISO
IEP		 (PMID:16133142) RGD PMID:16133142 PMID:16133142 RGD:8553876 NCBI chr 4:84,482,512...84,494,690
Ensembl chr 4:84,482,512...84,494,690 		JBrowse link
G Atp1b2 ATPase Na+/K+ transporting subunit beta 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:69165|PMID:7525597)		 Ensembl
RGD		 PMID:7525597 GO_REF:0000107 MGI:69165 NCBI chr10:54,318,698...54,324,933
Ensembl chr10:54,318,701...54,324,933 		JBrowse link
G Dbi diazepam binding inhibitor acts_upstream_of_or_within ISO (MGI:3717553|PMID:17150371) RGD PMID:17150371 MGI:3717553 NCBI chr13:31,241,466...31,249,853
Ensembl chr13:31,206,988...31,268,693 		JBrowse link
G Dnah5 dynein, axonemal, heavy chain 5 acts_upstream_of_or_within ISO MGI:2180081 (MGI:2178772|PMID:11912187) RGD PMID:11912187 MGI:2178772 NCBI chr 2:78,937,788...79,255,551
Ensembl chr 2:78,937,800...79,254,890 		JBrowse link
G Dpcd deleted in primary ciliary dyskinesia acts_upstream_of_or_within ISO (MGI:4948830|PMID:20080492) RGD PMID:20080492 MGI:4948830 NCBI chr 1:244,408,710...244,426,891
Ensembl chr 1:244,408,785...244,426,888 		JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (MGI:4949568|PMID:21220025) RGD PMID:21220025 MGI:4949568 NCBI chr12:33,566,530...33,701,366
Ensembl chr12:33,574,657...33,701,355 		JBrowse link
G Myh10 myosin heavy chain 10 acts_upstream_of_or_within ISO MGI:2386439|MGI:2386445 (MGI:1099556|PMID:9356462), (MGI:1354135|PMID:10712438), (MGI:1933038|PMID:11283949) RGD PMID:9356462 PMID:10712438 PMID:11283949 MGI:1099556 MGI:1354135 MGI:1933038 NCBI chr10:53,393,901...53,525,174
Ensembl chr10:53,394,389...53,525,165 		JBrowse link
G Numb NUMB, endocytic adaptor protein involved_in ISO (MGI:3763347|PMID:17174898) RGD PMID:17174898 MGI:3763347 NCBI chr 6:103,431,400...103,553,422
Ensembl chr 6:103,431,400...103,553,354 		JBrowse link
G Numbl NUMB-like, endocytic adaptor protein involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:3763347|PMID:17174898)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:17174898 GO_REF:0000024 GO_REF:0000107 MGI:3763347 NCBI chr 1:82,549,814...82,573,788
Ensembl chr 1:82,550,054...82,573,776 		JBrowse link
G Pax5 paired box 5 acts_upstream_of_or_within ISO MGI:2386577 (MGI:5476374|PMID:23349049) RGD PMID:23349049 MGI:5476374 NCBI chr 5:58,763,334...58,945,719
Ensembl chr 5:58,765,036...58,944,326 		JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within ISO MGI:3716208 (MGI:3716248|PMID:17558409) RGD PMID:17558409 MGI:3716248 NCBI chr19:15,692,189...15,785,083
Ensembl chr19:15,692,150...15,785,083 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:4867728 (MGI:4848234|PMID:21055390)		 Ensembl
RGD		 PMID:21055390 GO_REF:0000107 MGI:4848234 NCBI chr 1:152,660,259...152,671,682
Ensembl chr 1:152,656,693...152,672,588 		JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 involved_in ISO (MGI:4849324|PMID:21048919) RGD PMID:21048919 MGI:4849324 NCBI chr13:55,520,722...55,556,503
Ensembl chr13:55,520,729...55,556,502 		JBrowse link
third ventricle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1b2 ATPase Na+/K+ transporting subunit beta 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:69165|PMID:7525597)		 Ensembl
RGD		 PMID:7525597 GO_REF:0000107 MGI:69165 NCBI chr10:54,318,698...54,324,933
Ensembl chr10:54,318,701...54,324,933 		JBrowse link
G Dpcd deleted in primary ciliary dyskinesia acts_upstream_of_or_within ISO (MGI:4948830|PMID:20080492) RGD PMID:20080492 MGI:4948830 NCBI chr 1:244,408,710...244,426,891
Ensembl chr 1:244,408,785...244,426,888 		JBrowse link
G Grcc10 gene rich cluster, C10 gene involved_in ISO (PMID:23453666) RGD PMID:23453666 NCBI chr 4:157,551,276...157,552,924 JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (MGI:4949568|PMID:21220025) RGD PMID:21220025 MGI:4949568 NCBI chr12:33,566,530...33,701,366
Ensembl chr12:33,574,657...33,701,355 		JBrowse link
G Myh10 myosin heavy chain 10 acts_upstream_of_or_within ISO MGI:2386445 (MGI:1933038|PMID:11283949) RGD PMID:11283949 MGI:1933038 NCBI chr10:53,393,901...53,525,174
Ensembl chr10:53,394,389...53,525,165 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18734
    developmental process 6893
      anatomical structure development 6368
        system development 4939
          ventricular system development 35
            fourth ventricle development 2
            lateral ventricle development 13
            third ventricle development 5
Path 2
Term Annotations click to browse term
  biological_process 18734
    developmental process 6893
      anatomical structure development 6368
        multicellular organism development 5437
          system development 4939
            nervous system development 2767
              central nervous system development 1292
                brain development 990
                  ventricular system development 35
                    fourth ventricle development 2
                    lateral ventricle development 13
                    third ventricle development 5
paths to the root