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ONTOLOGY REPORT - ANNOTATIONS

Term:ventricular system development
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Accession:GO:0021591 term browser browse the term
Definition:The process whose specific outcome is the progression of the brain ventricular system over time, from its formation to the mature structure. The brain ventricular system consists of four communicating cavities within the brain that are continuous with the central canal of the spinal cord. These cavities include two lateral ventricles, the third ventricle and the fourth ventricle. Cerebrospinal fluid fills the ventricles and is produced by the choroid plexus.

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ventricular system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak8 adenylate kinase 8 acts_upstream_of_or_within ISO MGI:5429197 (MGI:5429171|PMID:21746835) RGD PMID:21746835 MGI:5429171 NCBI chr 3:7,279,429...7,394,509
Ensembl chr 3:7,279,340...7,394,513 		JBrowse link
G Anp32b acidic nuclear phosphoprotein 32 family member B involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:5003050 (MGI:5003056|PMID:21636789)		 Ensembl
RGD		 PMID:21636789 GO_REF:0000107 MGI:5003056 NCBI chr 5:62,070,709...62,094,633
Ensembl chr 5:62,071,346...62,094,633 		JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within ISO MGI:3767672|MGI:4837746|MGI:5474481 (MGI:5470340|PMID:23160237) RGD PMID:23160237 MGI:5470340 NCBI chr 1:220,146,084...220,165,545
Ensembl chr 1:220,147,327...220,165,678 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO MGI:3045473 (MGI:5604561|PMID:24695551) RGD PMID:24695551 MGI:5604561 NCBI chr 8:64,115,005...64,154,432
Ensembl chr 8:64,121,392...64,154,396 		JBrowse link
G Ccdc134 coiled-coil domain containing 134 acts_upstream_of_or_within ISO MGI:6117856 (MGI:6112839|PMID:29115376) RGD PMID:29115376 MGI:6112839 NCBI chr 7:123,362,471...123,376,930
Ensembl chr 7:123,364,312...123,376,221 		JBrowse link
G Celsr2 cadherin, EGF LAG seven-pass G-type receptor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:5429210 (MGI:5429171|PMID:21746835)		 Ensembl
RGD		 PMID:21746835 GO_REF:0000107 MGI:5429171 NCBI chr 2:211,183,410...211,207,458
Ensembl chr 2:211,183,311...211,207,465 		JBrowse link
G Cenpf centromere protein F involved_in ISO (PMID:25564561) RGD PMID:25564561 NCBI chr13:108,132,499...108,178,609
Ensembl chr13:108,132,499...108,178,609 		JBrowse link
G Dpcd deleted in primary ciliary dyskinesia acts_upstream_of_or_within ISO MGI:4262238 (MGI:5429171|PMID:21746835) RGD PMID:21746835 MGI:5429171 NCBI chr 1:265,298,872...265,318,521
Ensembl chr 1:265,298,868...265,317,860 		JBrowse link
G Hydin Hydin, axonemal central pair apparatus protein acts_upstream_of_or_within ISO MGI:1856913 (MGI:3793384|PMID:18250199), (MGI:53855|PMID:4732188) RGD PMID:4732188 PMID:18250199 MGI:3793384 MGI:53855 MGI:61244 MGI:61312 MGI:71926 NCBI chr19:41,036,507...41,379,634
Ensembl chr19:41,036,510...41,379,588 		JBrowse link
G Kif27 kinesin family member 27 acts_upstream_of_or_within ISO MGI:4318693 (MGI:5429171|PMID:21746835) RGD PMID:21746835 MGI:5429171 NCBI chr17:6,701,287...6,776,599
Ensembl chr17:6,701,315...6,772,349 		JBrowse link
G Mboat7 membrane bound O-acyltransferase domain containing 7 acts_upstream_of_or_within ISO MGI:5429211 (MGI:5429171|PMID:21746835) RGD PMID:21746835 MGI:5429171 NCBI chr 1:64,100,159...64,114,437
Ensembl chr 1:64,101,018...64,113,792 		JBrowse link
G Mecp2 methyl CpG binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2158354 (MGI:3807442|PMID:18571096)		 Ensembl
RGD		 PMID:18571096 GO_REF:0000107 MGI:3807442 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233 		JBrowse link
G Mnat1 MNAT1 component of CDK activating kinase acts_upstream_of_or_within ISO MGI:3707001 (MGI:3770112|PMID:17276355) RGD PMID:17276355 MGI:3770112 NCBI chr 6:95,995,341...96,153,331
Ensembl chr 6:96,007,805...96,153,330 		JBrowse link
G Nme5 NME/NM23 family member 5 acts_upstream_of_or_within ISO MGI:5429195 (MGI:5429171|PMID:21746835) RGD PMID:21746835 MGI:5429171 NCBI chr18:27,357,460...27,374,641
Ensembl chr18:27,357,413...27,374,603 		JBrowse link
G Odad2 outer dynein arm docking complex subunit 2 acts_upstream_of_or_within ISO MGI:5311373 (MGI:5551687|PMID:23849778) RGD PMID:23849778 MGI:5551687 NCBI chr17:60,283,926...60,474,289
Ensembl chr17:60,287,203...60,474,031 		JBrowse link
G Rapgef2 Rap guanine nucleotide exchange factor 2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3757825|PMID:17826737)		 UniProt
RGD		 PMID:17826737 GO_REF:0000024 MGI:3757825 NCBI chr 2:177,836,191...178,057,378
Ensembl chr 2:177,836,202...178,057,157 		JBrowse link
G Sema6d semaphorin 6D acts_upstream_of_or_within ISO (MGI:3037225|PMID:14977921) RGD PMID:14977921 MGI:3037225 NCBI chr 3:116,899,906...116,958,059
Ensembl chr 3:116,899,878...116,958,050 		JBrowse link
G Slc7a11 solute carrier family 7 member 11 acts_upstream_of_or_within ISO MGI:1857061 (MGI:3664848|PMID:17035536) RGD PMID:17035536 MGI:3664848 NCBI chr 2:139,453,774...139,528,479
Ensembl chr 2:139,453,774...139,528,162 		JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B acts_upstream_of_or_within ISO MGI:2152544 (MGI:4367927|PMID:19732765) RGD PMID:19732765 MGI:4367927 NCBI chr 3:52,286,794...52,361,060
Ensembl chr 3:52,286,794...52,361,060 		JBrowse link
G Ttn titin acts_upstream_of_or_within ISO MGI:3763610 (MGI:3760201|PMID:17360664) RGD PMID:17360664 MGI:3760201 NCBI chr 3:63,565,160...63,837,815 JBrowse link
G Ulk4 unc-51 like kinase 4 acts_upstream_of_or_within ISO MGI:5429194 (MGI:5429171|PMID:21746835) RGD PMID:21746835 MGI:5429171 NCBI chr 8:129,631,003...129,919,080
Ensembl chr 8:129,632,149...129,919,120 		JBrowse link
fourth ventricle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm2b lysine demethylase 2B involved_in ISO (MGI:4949568|PMID:21220025) RGD PMID:21220025 MGI:4949568 NCBI chr12:39,021,924...39,161,954
Ensembl chr12:39,078,119...39,161,956 		JBrowse link
G Myh10 myosin heavy chain 10 acts_upstream_of_or_within ISO MGI:2386445|MGI:3664764 (MGI:1933038|PMID:11283949), (MGI:3656460|PMID:16481398) RGD PMID:11283949 PMID:16481398 MGI:1933038 MGI:3656460 NCBI chr10:55,274,910...55,406,738
Ensembl chr10:55,275,411...55,406,732 		JBrowse link
lateral ventricle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp1 aquaporin 1 involved_in
acts_upstream_of_or_within		 ISO
IEP		 (PMID:16133142) RGD PMID:16133142, PMID:16133142 RGD:8553876 NCBI chr 4:85,551,503...85,563,683
Ensembl chr 4:85,551,502...85,569,360 		JBrowse link
G Atp1b2 ATPase Na+/K+ transporting subunit beta 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:69165|PMID:7525597)		 Ensembl
RGD		 PMID:7525597 GO_REF:0000107 MGI:69165 NCBI chr10:56,205,622...56,211,879
Ensembl chr10:56,205,625...56,211,891 		JBrowse link
G Dbi diazepam binding inhibitor, acyl-CoA binding protein acts_upstream_of_or_within ISO (MGI:3717553|PMID:17150371) RGD PMID:17150371 MGI:3717553 NCBI chr13:36,147,667...36,156,076
Ensembl chr13:36,117,119...36,174,908 		JBrowse link
G Dnah5 dynein, axonemal, heavy chain 5 acts_upstream_of_or_within ISO MGI:2180081 (MGI:2178772|PMID:11912187) RGD PMID:11912187 MGI:2178772 NCBI chr 2:80,947,730...81,143,997
NCBI chr 2:81,159,060...81,337,560
Ensembl chr 2:80,948,658...81,143,447 		JBrowse link
G Dpcd deleted in primary ciliary dyskinesia acts_upstream_of_or_within ISO (MGI:4948830|PMID:20080492) RGD PMID:20080492 MGI:4948830 NCBI chr 1:265,298,872...265,318,521
Ensembl chr 1:265,298,868...265,317,860 		JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (MGI:4949568|PMID:21220025) RGD PMID:21220025 MGI:4949568 NCBI chr12:39,021,924...39,161,954
Ensembl chr12:39,078,119...39,161,956 		JBrowse link
G Myh10 myosin heavy chain 10 acts_upstream_of_or_within ISO MGI:2386439|MGI:2386445 (MGI:1099556|PMID:9356462), (MGI:1354135|PMID:10712438), (MGI:1933038|PMID:11283949) RGD PMID:9356462 PMID:10712438 PMID:11283949 MGI:1099556 MGI:1354135 MGI:1933038 NCBI chr10:55,274,910...55,406,738
Ensembl chr10:55,275,411...55,406,732 		JBrowse link
G Numb NUMB, endocytic adaptor protein involved_in IEA
ISO		 GO_REF:0000107
(MGI:3763347|PMID:17174898)		 Ensembl
RGD		 PMID:17174898 GO_REF:0000107 MGI:3763347 NCBI chr 6:107,279,917...107,325,345
Ensembl chr 6:107,279,920...107,325,345 		JBrowse link
G Numbl NUMB-like, endocytic adaptor protein involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:3763347|PMID:17174898)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:17174898 GO_REF:0000024 GO_REF:0000107 MGI:3763347 NCBI chr 1:84,067,841...84,091,659
Ensembl chr 1:84,067,938...84,091,671 		JBrowse link
G Pax5 paired box 5 acts_upstream_of_or_within ISO MGI:2386577 (MGI:5476374|PMID:23349049) RGD PMID:23349049 MGI:5476374 NCBI chr 5:60,007,587...60,191,973
Ensembl chr 5:60,007,587...60,191,941 		JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within ISO MGI:3716208 (MGI:3716248|PMID:17558409) RGD PMID:17558409 MGI:3716248 NCBI chr19:17,115,266...17,208,055
Ensembl chr19:17,115,412...17,208,055 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:4867728 (MGI:4848234|PMID:21055390)		 Ensembl
RGD		 PMID:21055390 GO_REF:0000107 MGI:4848234 NCBI chr 1:163,317,281...163,328,697
Ensembl chr 1:163,317,282...163,328,591 		JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 involved_in ISO (MGI:4849324|PMID:21048919) RGD PMID:21048919 MGI:4849324 NCBI chr13:60,568,102...60,603,812
Ensembl chr13:60,545,635...60,603,811 		JBrowse link
third ventricle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1b2 ATPase Na+/K+ transporting subunit beta 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:69165|PMID:7525597)		 Ensembl
RGD		 PMID:7525597 GO_REF:0000107 MGI:69165 NCBI chr10:56,205,622...56,211,879
Ensembl chr10:56,205,625...56,211,891 		JBrowse link
G Dpcd deleted in primary ciliary dyskinesia acts_upstream_of_or_within ISO (MGI:4948830|PMID:20080492) RGD PMID:20080492 MGI:4948830 NCBI chr 1:265,298,872...265,318,521
Ensembl chr 1:265,298,868...265,317,860 		JBrowse link
G Grcc10 gene rich cluster, C10 gene involved_in ISO (PMID:23453666) RGD PMID:23453666 NCBI chr 4:157,264,383...157,266,042
Ensembl chr 4:157,264,383...157,266,018
Ensembl chr 9:157,264,383...157,266,018 		JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (MGI:4949568|PMID:21220025) RGD PMID:21220025 MGI:4949568 NCBI chr12:39,021,924...39,161,954
Ensembl chr12:39,078,119...39,161,956 		JBrowse link
G Myh10 myosin heavy chain 10 acts_upstream_of_or_within ISO MGI:2386445 (MGI:1933038|PMID:11283949) RGD PMID:11283949 MGI:1933038 NCBI chr10:55,274,910...55,406,738
Ensembl chr10:55,275,411...55,406,732 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19633
    developmental process 6782
      anatomical structure development 6259
        system development 5283
          ventricular system development 34
            fourth ventricle development 2
            lateral ventricle development 13
            third ventricle development 5
Path 2
Term Annotations click to browse term
  biological_process 19633
    developmental process 6782
      anatomical structure development 6259
        multicellular organism development 5740
          system development 5283
            nervous system development 2717
              central nervous system development 1267
                brain development 971
                  ventricular system development 34
                    fourth ventricle development 2
                    lateral ventricle development 13
                    third ventricle development 5
paths to the root