Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:cerebellum morphogenesis
go back to main search page
Accession:GO:0021587 term browser browse the term
Definition:The process in which the anatomical structure of the cerebellum is generated and organized. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. The cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills.

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
cerebellum morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20980600) Ensembl
MGI		 PMID:20980600 GO_REF:0000107 NCBI chrNW_004936487:17,690,206...17,819,619
Ensembl chrNW_004936487:17,690,968...17,819,669 		JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (PMID:20980600) MGI PMID:20980600 NCBI chrNW_004936481:9,823,790...9,847,291
Ensembl chrNW_004936481:9,824,392...9,847,104 		JBrowse link
G Cbs cystathionine beta-synthase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16160063) Ensembl
MGI		 PMID:16160063 GO_REF:0000107 NCBI chrNW_004936500:976,043...1,003,559
Ensembl chrNW_004936500:987,128...1,003,388 		JBrowse link
G Gnpat glyceronephosphate O-acyltransferase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19270340) Ensembl
MGI		 PMID:19270340 GO_REF:0000107 NCBI chrNW_004936484:19,414,094...19,434,929
Ensembl chrNW_004936484:19,410,956...19,434,929 		JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO (PMID:17166916) MGI PMID:17166916 NCBI chrNW_004936487:14,513,303...14,587,771
Ensembl chrNW_004936487:14,513,290...14,587,902 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:11029008) MGI PMID:11029008 NCBI chrNW_004936587:5,065,200...5,143,029
Ensembl chrNW_004936587:4,978,043...5,140,191 		JBrowse link
G Skor2 SKI family transcriptional corepressor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21937600) Ensembl
MGI		 PMID:21937600 GO_REF:0000107 NCBI chrNW_004936983:156,466...197,281
Ensembl chrNW_004936983:161,836...197,276 		JBrowse link
G Xrcc1 X-ray repair cross complementing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:752,571...783,746
Ensembl chrNW_004936706:751,108...783,777 		JBrowse link
cerebellar cortex formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5 cyclin dependent kinase 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10407039) Ensembl
MGI		 PMID:10407039 GO_REF:0000107 NCBI chrNW_004936527:6,478,934...6,483,848
Ensembl chrNW_004936527:6,478,982...6,483,866 		JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24431450) Ensembl
MGI		 PMID:24431450 GO_REF:0000107 NCBI chrNW_004936471:26,589,251...26,628,302
Ensembl chrNW_004936471:26,589,161...26,628,302 		JBrowse link
G Ptpn11 protein tyrosine phosphatase non-receptor type 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24431450) Ensembl
MGI		 PMID:24431450 GO_REF:0000107 NCBI chrNW_004936668:2,602,261...2,687,903
Ensembl chrNW_004936668:2,628,706...2,682,448 		JBrowse link
cerebellar cortex morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Comt catechol-O-methyltransferase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28556830) Ensembl
MGI		 PMID:28556830 GO_REF:0000107 NCBI chrNW_004936619:3,847,059...3,883,866
Ensembl chrNW_004936619:3,876,299...3,882,747 		JBrowse link
G Gli1 GLI family zinc finger 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16571625) Ensembl
MGI		 PMID:16571625 GO_REF:0000107 NCBI chrNW_004936646:1,622,308...1,629,787
Ensembl chrNW_004936646:1,622,308...1,629,779 		JBrowse link
G Gli2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16571625) Ensembl
MGI		 PMID:16571625 GO_REF:0000107 NCBI chrNW_004936469:49,616,552...49,788,760
Ensembl chrNW_004936469:49,617,095...49,673,213 		JBrowse link
G LOC101972766 tubulin alpha-1A chain involved_in ISO (PMID:17218254) MGI PMID:17218254 NCBI chrNW_004936512:6,959,656...6,964,299
Ensembl chrNW_004936512:6,958,985...6,964,299 		JBrowse link
G Nfix nuclear factor I X acts_upstream_of_or_within ISO (PMID:30503862) MGI PMID:30503862 NCBI chrNW_004936659:2,065,410...2,136,898
Ensembl chrNW_004936659:2,065,458...2,136,889 		JBrowse link
G Pcnt pericentrin acts_upstream_of_or_within ISO (PMID:20096683) MGI PMID:20096683 NCBI chrNW_004936778:149,844...248,905
Ensembl chrNW_004936778:149,177...247,357 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16571625) Ensembl
MGI		 PMID:16571625 GO_REF:0000107 NCBI chrNW_004936579:5,893,064...5,917,021
Ensembl chrNW_004936579:5,892,542...5,917,281 		JBrowse link
cerebellar cortex structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Usp9x ubiquitin specific peptidase 9 X-linked acts_upstream_of_or_within ISO (PMID:23861879) MGI PMID:23861879 NCBI chrNW_004936502:7,649,808...7,732,731
Ensembl chrNW_004936502:7,649,842...7,735,382 		JBrowse link
cerebellar granular layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Serpine2 serpin family E member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17409116) Ensembl
MGI		 PMID:17409116 GO_REF:0000107 NCBI chrNW_004936569:5,642,328...5,668,278
Ensembl chrNW_004936569:5,642,264...5,668,323 		JBrowse link
cerebellar granular layer structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif14 kinesin family member 14 involved_in ISO (MGI:5485315|PMID:23308235) UniProt PMID:23308235 MGI:5485315 NCBI chrNW_004936567:3,704,672...3,764,111 JBrowse link
cerebellar granule cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (PMID:9668038) MGI PMID:9668038 NCBI chrNW_004936602:2,744,757...3,011,051
Ensembl chrNW_004936602:2,744,759...3,007,940 		JBrowse link
G Cbln1 cerebellin 1 precursor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:2,493,280...2,496,738
Ensembl chrNW_004936475:2,494,156...2,496,743 		JBrowse link
G Grid2 glutamate ionotropic receptor delta type subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936687:20,126...1,421,075
Ensembl chrNW_004936687:549,947...1,421,133 		JBrowse link
G Kndc1 kinase non-catalytic C-lobe domain containing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17984326) Ensembl
MGI		 PMID:17984326 GO_REF:0000107 NCBI chrNW_004936486:19,287,468...19,341,127
Ensembl chrNW_004936486:19,287,462...19,341,145 		JBrowse link
G Mtpn myotrophin ISO RGD PMID:8144589 RGD:632797 NCBI chrNW_004936592:644,618...679,615
Ensembl chrNW_004936592:644,430...679,800 		JBrowse link
G Nfix nuclear factor I X acts_upstream_of_or_within
involved_in		 ISO (PMID:21800304)
(PMID:23042739)		 MGI PMID:21800304 PMID:23042739 NCBI chrNW_004936659:2,065,410...2,136,898
Ensembl chrNW_004936659:2,065,458...2,136,889 		JBrowse link
G Nrxn1 neurexin 1 involved_in ISO (MGI:4839424|PMID:20537373) BHF-UCL PMID:20537373 MGI:4839424 NCBI chrNW_004936508:1,889,640...2,954,039 JBrowse link
G Ophn1 oligophrenin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936635:6,966...243,209
Ensembl chrNW_004936635:6,923...244,408 		JBrowse link
G Prox1 prospero homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936628:4,185,712...4,240,680
Ensembl chrNW_004936628:4,185,706...4,238,451 		JBrowse link
G Top2a DNA topoisomerase II alpha ISO RGD PMID:11170002 RGD:8693630 NCBI chrNW_004936490:15,441,463...15,465,692
Ensembl chrNW_004936490:15,441,575...15,466,978 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 acts_upstream_of_or_within ISO (PMID:10624947) MGI PMID:10624947 NCBI chrNW_004936660:2,160,394...2,188,848
Ensembl chrNW_004936660:2,163,844...2,187,080 		JBrowse link
G Wnt7a Wnt family member 7A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9405095) Ensembl
MGI		 PMID:9405095 GO_REF:0000107 NCBI chrNW_004936898:45,903...70,313
Ensembl chrNW_004936898:45,115...70,326 		JBrowse link
cerebellar molecular layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937098:212,704...220,589
Ensembl chrNW_004937098:213,227...220,427 		JBrowse link
cerebellar molecular layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Znf365 zinc finger protein 365 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936614:833,665...853,547
Ensembl chrNW_004936614:835,866...853,547 		JBrowse link
cerebellar Purkinje cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agtpbp1 ATP/GTP binding carboxypeptidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936680:1,065,375...1,240,909
Ensembl chrNW_004936680:1,065,937...1,240,875 		JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (PMID:9668038) MGI PMID:9668038 NCBI chrNW_004936602:2,744,757...3,011,051
Ensembl chrNW_004936602:2,744,759...3,007,940 		JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO (PMID:2473662) MGI PMID:2473662 NCBI chrNW_004936683:2,874,022...2,936,214
Ensembl chrNW_004936683:2,874,042...2,935,040 		JBrowse link
G Atxn2 ataxin 2 acts_upstream_of_or_within ISO (PMID:10973246) MGI PMID:10973246 NCBI chrNW_004936558:4,127,477...4,188,307
Ensembl chrNW_004936558:4,127,477...4,232,393 		JBrowse link
G Cend1 cell cycle exit and neuronal differentiation 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20153830) Ensembl
MGI
TreeGrafter		 PMID:20153830 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936888:554,859...557,759
Ensembl chrNW_004936888:554,822...557,713 		JBrowse link
G Faim2 Fas apoptotic inhibitory molecule 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:7,544,047...7,575,922
Ensembl chrNW_004936512:7,544,003...7,576,315 		JBrowse link
G Foxp2 forkhead box P2 involved_in ISO (PMID:22133810) MGI PMID:22133810 NCBI chrNW_004936589:4,120,162...4,661,258
Ensembl chrNW_004936589:4,123,182...4,382,005 		JBrowse link
G Herc1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20041218) Ensembl
MGI		 PMID:20041218 GO_REF:0000107 NCBI chrNW_004936471:24,142,227...24,330,966
Ensembl chrNW_004936471:24,141,928...24,330,967 		JBrowse link
G Ldb1 LIM domain binding 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17664423) Ensembl
MGI		 PMID:17664423 GO_REF:0000107 NCBI chrNW_004936600:3,714,630...3,728,813
Ensembl chrNW_004936600:3,714,095...3,728,815 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17664423) Ensembl
MGI		 PMID:17664423 GO_REF:0000107 NCBI chrNW_004936490:1,324,378...1,332,177
Ensembl chrNW_004936490:1,324,370...1,331,505 		JBrowse link
G Lhx5 LIM homeobox 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17664423) Ensembl
MGI		 PMID:17664423 GO_REF:0000107 NCBI chrNW_004936668:3,246,456...3,255,353
Ensembl chrNW_004936668:3,246,456...3,255,353 		JBrowse link
G LOC101960999 voltage-dependent P/Q-type calcium channel subunit alpha-1A acts_upstream_of_or_within ISO (PMID:10630211)
(PMID:7834360)
(PMID:1306163)		 MGI PMID:1306163 PMID:7834360 PMID:10630211 NCBI chrNW_004936659:2,201,606...2,269,625
Ensembl chrNW_004936659:2,192,610...2,392,638 		JBrowse link
G Psap prosaposin acts_upstream_of_or_within ISO (PMID:15345707) MGI PMID:15345707 NCBI chrNW_004936521:6,975,844...7,009,460
Ensembl chrNW_004936521:6,975,770...7,009,136 		JBrowse link
G Rora RAR related orphan receptor A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8996814) Ensembl
MGI		 PMID:8996814 GO_REF:0000107 NCBI chrNW_004936471:21,402,056...21,567,908
Ensembl chrNW_004936471:21,400,589...22,069,643 		JBrowse link
G Skor2 SKI family transcriptional corepressor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21937600)
(PMID:24491816)		 Ensembl
MGI		 PMID:21937600 PMID:24491816 GO_REF:0000107 NCBI chrNW_004936983:156,466...197,281
Ensembl chrNW_004936983:161,836...197,276 		JBrowse link
G Slc25a46 solute carrier family 25 member 46 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28934388) Ensembl
MGI		 PMID:28934388 GO_REF:0000107 NCBI chrNW_004936531:5,177,750...5,201,362
Ensembl chrNW_004936531:5,177,739...5,203,955 		JBrowse link
G Top2a DNA topoisomerase II alpha ISO RGD PMID:11170002 RGD:8693630 NCBI chrNW_004936490:15,441,463...15,465,692
Ensembl chrNW_004936490:15,441,575...15,466,978 		JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29615573) Ensembl
MGI		 PMID:29615573 GO_REF:0000107 NCBI chrNW_004936469:13,365,168...13,454,340
Ensembl chrNW_004936469:13,365,087...13,454,340 		JBrowse link
G Ttll1 TTL family tubulin polyglutamylase complex subunit L1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:30420556) Ensembl
MGI		 PMID:30420556 GO_REF:0000107 NCBI chrNW_004936718:869,901...884,708
Ensembl chrNW_004936718:869,876...884,684 		JBrowse link
cerebellar Purkinje cell layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gba1 glucosylceramidase beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17954912) Ensembl
MGI		 PMID:17954912 GO_REF:0000107 NCBI chrNW_004936580:4,715,869...4,720,752
Ensembl chrNW_004936580:4,715,408...4,720,798 		JBrowse link
G Whrn whirlin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:3,668,465...3,748,234
Ensembl chrNW_004936487:3,669,104...3,748,238 		JBrowse link
cerebellar Purkinje cell layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (PMID:17409239) MGI PMID:17409239 NCBI chrNW_004936602:2,744,757...3,011,051
Ensembl chrNW_004936602:2,744,759...3,007,940 		JBrowse link
G Cntnap2 contactin associated protein 2 involved_in ISO (PMID:32675284) MGI PMID:32675284 NCBI chrNW_004936527:2,859,442...4,748,885
Ensembl chrNW_004936527:2,859,930...4,746,995 		JBrowse link
G Coq8b coenzyme Q8B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:2,989,164...3,008,955
Ensembl chrNW_004936661:2,989,162...3,006,289 		JBrowse link
G Sptbn2 spectrin beta, non-erythrocytic 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20231455) Ensembl
MGI		 PMID:20231455 GO_REF:0000107 NCBI chrNW_004936599:2,890,404...2,928,502
Ensembl chrNW_004936599:2,890,817...2,928,499 		JBrowse link
cerebellar Purkinje cell layer structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937098:212,704...220,589
Ensembl chrNW_004937098:213,227...220,427 		JBrowse link
G Kif14 kinesin family member 14 involved_in ISO (MGI:5485315|PMID:23308235) UniProt PMID:23308235 MGI:5485315 NCBI chrNW_004936567:3,704,672...3,764,111 JBrowse link
cerebellum formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt1 Wnt family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:6,781,001...6,785,358
Ensembl chrNW_004936512:6,780,882...6,785,358 		JBrowse link
cerebellum structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dab1 DAB adaptor protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9338785) Ensembl
MGI		 PMID:9338785 GO_REF:0000107 NCBI chrNW_004936522:3,498,395...4,612,560
Ensembl chrNW_004936522:4,333,647...4,616,044 		JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:13,348,465...13,352,717
Ensembl chrNW_004936487:13,348,465...13,352,717 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15871
    developmental process 6321
      anatomical structure morphogenesis 2769
        cerebellum morphogenesis 58
          cerebellar cortex morphogenesis + 48
          cerebellum formation 1
          cerebellum structural organization 2
Path 2
Term Annotations click to browse term
  biological_process 15871
    developmental process 6321
      anatomical structure development 5953
        multicellular organism development 4829
          system development 4203
            nervous system development 2641
              central nervous system development 1133
                brain development 856
                  hindbrain development 219
                    metencephalon development 166
                      cerebellum development 152
                        cerebellum morphogenesis 58
                          cerebellar cortex morphogenesis + 48
                          cerebellum formation 1
                          cerebellum structural organization 2
paths to the root