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ONTOLOGY REPORT - ANNOTATIONS


Term:hindbrain morphogenesis
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Accession:GO:0021575 term browser browse the term
Definition:The process in which the anatomical structure of the hindbrain is generated and organized. The hindbrain is the region consisting of the medulla, pons and cerebellum. Areas of the hindbrain control motor and autonomic functions.
Synonyms:related_synonym: rhombencephalon morphogenesis


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hindbrain morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlc1 DLC1 Rho GTPase activating protein acts_upstream_of_or_within ISO (MGI:3529660|PMID:15710412) MGI PMID:15710412 MGI:3529660 NCBI chrNW_004936573:2,493,051...2,658,396 JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO (MGI:1099899|PMID:9398437) MGI PMID:9398437 MGI:1099899 NCBI chrNW_004936482:16,703,936...16,706,224 JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO (MGI:2149154|PMID:11500373) MGI PMID:11500373 MGI:2149154 NCBI chrNW_004936711:640,002...642,580 JBrowse link
G Hes3 hes family bHLH transcription factor 3 acts_upstream_of_or_within ISO (MGI:2149154|PMID:11500373) MGI PMID:11500373 MGI:2149154 NCBI chrNW_004936623:1,096,519...1,098,175 JBrowse link
cerebellar cortex formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5 cyclin dependent kinase 5 acts_upstream_of_or_within ISO (MGI:1340775|PMID:10407039) MGI PMID:10407039 MGI:1340775 NCBI chrNW_004936527:6,478,934...6,483,848 JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 acts_upstream_of_or_within ISO (MGI:5545830|PMID:24431450) MGI PMID:24431450 MGI:5545830 NCBI chrNW_004936471:26,589,251...26,628,302 JBrowse link
G Ptpn11 protein tyrosine phosphatase non-receptor type 11 acts_upstream_of_or_within ISO (MGI:5545830|PMID:24431450) MGI PMID:24431450 MGI:5545830 NCBI chrNW_004936668:2,602,261...2,687,903 JBrowse link
cerebellar cortex morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli1 GLI family zinc finger 1 acts_upstream_of_or_within ISO (MGI:3624180|PMID:16571625) MGI PMID:16571625 MGI:3624180 NCBI chrNW_004936646:1,622,308...1,629,787 JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (MGI:3624180|PMID:16571625) MGI PMID:16571625 MGI:3624180 NCBI chrNW_004936469:49,616,552...49,788,760 JBrowse link
G Pcnt pericentrin acts_upstream_of_or_within ISO (MGI:4438783|PMID:20096683) MGI PMID:20096683 MGI:4438783 NCBI chrNW_004936778:149,844...248,905 JBrowse link
G Rfx4 regulatory factor X4 acts_upstream_of_or_within ISO (MGI:2669568|PMID:12925582) MGI PMID:12925582 MGI:2669568 NCBI chrNW_004936492:8,201,951...8,345,788 JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO (MGI:3624180|PMID:16571625) MGI PMID:16571625 MGI:3624180 NCBI chrNW_004936579:5,893,064...5,917,021 JBrowse link
cerebellar cortex structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Usp9x ubiquitin specific peptidase 9 X-linked acts_upstream_of_or_within ISO (MGI:5532214|PMID:23861879) MGI PMID:23861879 MGI:5532214 NCBI chrNW_004936502:7,649,808...7,732,731 JBrowse link
cerebellar granular layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Serpine2 serpin family E member 2 acts_upstream_of_or_within ISO (MGI:3709698|PMID:17409116) MGI PMID:17409116 MGI:3709698 NCBI chrNW_004936569:5,642,328...5,668,278 JBrowse link
cerebellar granular layer structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif14 kinesin family member 14 involved_in ISO (MGI:5485315|PMID:23308235) UniProt PMID:23308235 MGI:5485315 NCBI chrNW_004936567:3,704,672...3,764,111 JBrowse link
cerebellar granule cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (MGI:1275896|PMID:9668038) MGI PMID:9668038 MGI:1275896 NCBI chrNW_004936602:2,744,757...3,011,051 JBrowse link
G Cbln1 cerebellin 1 precursor involved_in ISO (MGI:4839424|PMID:20537373) BHF-UCL PMID:20537373 MGI:4839424 NCBI chrNW_004936475:2,493,280...2,496,738 JBrowse link
G Grid2 glutamate ionotropic receptor delta type subunit 2 involved_in ISO (MGI:4839424|PMID:20537373) BHF-UCL PMID:20537373 MGI:4839424 NCBI chrNW_004936687:20,126...1,421,075 JBrowse link
G Kndc1 kinase non-catalytic C-lobe domain containing 1 acts_upstream_of_or_within ISO (MGI:3769586|PMID:17984326) MGI PMID:17984326 MGI:3769586 NCBI chrNW_004936486:19,287,468...19,341,127 JBrowse link
G Mtpn myotrophin ISO RGD PMID:8144589 RGD:632797 NCBI chrNW_004936592:644,618...679,615 JBrowse link
G Nfix nuclear factor I X acts_upstream_of_or_within ISO (MGI:5436217|PMID:21800304) MGI PMID:21800304 MGI:5436217 NCBI chrNW_004936659:2,065,410...2,136,898 JBrowse link
G Nrxn1 neurexin 1 involved_in ISO (MGI:4839424|PMID:20537373) BHF-UCL PMID:20537373 MGI:4839424 NCBI chrNW_004936508:1,889,640...2,954,039 JBrowse link
G Ophn1 oligophrenin 1 involved_in ISO (PMID:27160703) ARUK-UCL PMID:27160703 NCBI chrNW_004936635:6,966...243,209 JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (MGI:4849596|PMID:20808958) BHF-UCL PMID:20808958 MGI:4849596 NCBI chrNW_004936628:4,185,712...4,240,680 JBrowse link
G Top2a DNA topoisomerase II alpha ISO RGD PMID:11170002 RGD:8693630 NCBI chrNW_004936490:15,441,463...15,465,692 JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 acts_upstream_of_or_within ISO (MGI:1351063|PMID:10624947) MGI PMID:10624947 MGI:1351063 NCBI chrNW_004936660:2,160,394...2,188,848 JBrowse link
G Wnt7a Wnt family member 7A acts_upstream_of_or_within ISO (MGI:1195230|PMID:9405095) MGI PMID:9405095 MGI:1195230 NCBI chrNW_004936898:45,903...70,313 JBrowse link
cerebellar molecular layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 involved_in ISO (MGI:5504540|PMID:23688253) UniProt PMID:23688253 MGI:5504540 NCBI chrNW_004937098:212,704...220,589 JBrowse link
cerebellar molecular layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Znf365 zinc finger protein 365 involved_in ISO (MGI:5559035|PMID:23912123) UniProt PMID:23912123 MGI:5559035 NCBI chrNW_004936614:833,665...853,547 JBrowse link
cerebellar Purkinje cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (MGI:1275896|PMID:9668038) MGI PMID:9668038 MGI:1275896 NCBI chrNW_004936602:2,744,757...3,011,051 JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO (MGI:71790|PMID:2473662) MGI PMID:2473662 MGI:71790 NCBI chrNW_004936683:2,874,022...2,936,214 JBrowse link
G Atxn2 ataxin 2 acts_upstream_of_or_within ISO (MGI:3510013|PMID:10973246) MGI PMID:10973246 MGI:3510013 NCBI chrNW_004936558:4,127,477...4,188,307 JBrowse link
G Cend1 cell cycle exit and neuronal differentiation 1 acts_upstream_of_or_within ISO (MGI:4830814|PMID:20153830) MGI PMID:20153830 MGI:4830814 NCBI chrNW_004936888:554,859...557,759 JBrowse link
G Faim2 Fas apoptotic inhibitory molecule 2 involved_in ISO (MGI:5295128|PMID:21957071) UniProt PMID:21957071 MGI:5295128 NCBI chrNW_004936512:7,544,047...7,575,922 JBrowse link
G Foxp2 forkhead box P2 involved_in ISO (MGI:5306536|PMID:22133810) MGI PMID:22133810 MGI:5306536 NCBI chrNW_004936589:4,120,162...4,661,258 JBrowse link
G Herc1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 acts_upstream_of_or_within ISO (MGI:4461108|PMID:20041218) MGI PMID:20041218 MGI:4461108 NCBI chrNW_004936471:24,142,227...24,330,966 JBrowse link
G Ldb1 LIM domain binding 1 acts_upstream_of_or_within ISO (MGI:3718715|PMID:17664423) MGI PMID:17664423 MGI:3718715 NCBI chrNW_004936600:3,714,630...3,728,813 JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (MGI:3718715|PMID:17664423) MGI PMID:17664423 MGI:3718715 NCBI chrNW_004936490:1,324,378...1,332,177 JBrowse link
G Lhx5 LIM homeobox 5 acts_upstream_of_or_within ISO (MGI:3718715|PMID:17664423) MGI PMID:17664423 MGI:3718715 NCBI chrNW_004936668:3,246,456...3,255,353 JBrowse link
G LOC101960999 voltage-dependent P/Q-type calcium channel subunit alpha-1A acts_upstream_of_or_within ISO (MGI:62667|PMID:1306163)
(MGI:1347769|PMID:10630211)
(MGI:68980|PMID:7834360)
MGI PMID:1306163 PMID:7834360 PMID:10630211 MGI:1347769 MGI:62667 MGI:68980 NCBI chrNW_004936659:2,201,606...2,269,625 JBrowse link
G LOC101976627 prosaposin acts_upstream_of_or_within ISO (MGI:3512714|PMID:15345707) MGI PMID:15345707 MGI:3512714 NCBI chrNW_004936521:6,975,844...7,009,460 JBrowse link
G Rora RAR related orphan receptor A acts_upstream_of_or_within ISO (MGI:86446|PMID:8996814) MGI PMID:8996814 MGI:86446 NCBI chrNW_004936471:21,402,056...21,567,908 JBrowse link
G Skor2 SKI family transcriptional corepressor 2 acts_upstream_of_or_within ISO (MGI:5565016|PMID:24491816)
(MGI:5300220|PMID:21937600)
MGI PMID:21937600 PMID:24491816 MGI:5300220 MGI:5565016 NCBI chrNW_004936983:156,466...197,281 JBrowse link
G Slc25a46 solute carrier family 25 member 46 acts_upstream_of_or_within ISO (MGI:5921109|PMID:28934388) MGI PMID:28934388 MGI:5921109 NCBI chrNW_004936531:5,177,750...5,201,362 JBrowse link
G Top2a DNA topoisomerase II alpha ISO RGD PMID:11170002 RGD:8693630 NCBI chrNW_004936490:15,441,463...15,465,692 JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B acts_upstream_of_or_within ISO (MGI:6152587|PMID:29615573) MGI PMID:29615573 MGI:6152587 NCBI chrNW_004936469:13,365,168...13,454,340 JBrowse link
G Ttll1 tubulin tyrosine ligase like 1 acts_upstream_of_or_within ISO (MGI:6269036|PMID:30420556) MGI PMID:30420556 MGI:6269036 NCBI chrNW_004936718:869,901...884,708 JBrowse link
cerebellar Purkinje cell layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gba glucosylceramidase beta acts_upstream_of_or_within ISO (MGI:3762988|PMID:17954912) MGI PMID:17954912 MGI:3762988 NCBI chrNW_004936580:4,715,869...4,720,752 JBrowse link
G Whrn whirlin involved_in ISO (MGI:5516521|PMID:24011083) CACAO PMID:24011083 MGI:5516521 NCBI chrNW_004936487:3,668,465...3,748,234 JBrowse link
cerebellar Purkinje cell layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (MGI:3709537|PMID:17409239) MGI PMID:17409239 MGI:3709537 NCBI chrNW_004936602:2,744,757...3,011,051 JBrowse link
G Cntnap2 contactin associated protein 2 involved_in ISO (MGI:6477849|PMID:32675284) MGI PMID:32675284 MGI:6477849 NCBI chrNW_004936527:2,859,442...4,748,885 JBrowse link
G Coq8b coenzyme Q8B involved_in ISO (PMID:27499294) UniProt PMID:27499294 NCBI chrNW_004936661:2,989,164...3,008,955 JBrowse link
G Sptbn2 spectrin beta, non-erythrocytic 2 acts_upstream_of_or_within ISO (MGI:4438955|PMID:20231455) MGI PMID:20231455 MGI:4438955 NCBI chrNW_004936599:2,890,404...2,928,502 JBrowse link
cerebellar Purkinje cell layer structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 involved_in ISO (MGI:5504540|PMID:23688253) UniProt PMID:23688253 MGI:5504540 NCBI chrNW_004937098:212,704...220,589 JBrowse link
G Kif14 kinesin family member 14 involved_in ISO (MGI:5485315|PMID:23308235) UniProt PMID:23308235 MGI:5485315 NCBI chrNW_004936567:3,704,672...3,764,111 JBrowse link
cerebellum formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt1 Wnt family member 1 involved_in ISO (MGI:1931348|PMID:2202907) BHF-UCL PMID:2202907 MGI:1931348 NCBI chrNW_004936512:6,781,001...6,785,358 JBrowse link
cerebellum morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (MGI:4840122|PMID:20980600) MGI PMID:20980600 MGI:4840122 NCBI chrNW_004936487:17,690,206...17,819,619 JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (MGI:4840122|PMID:20980600) MGI PMID:20980600 MGI:4840122 NCBI chrNW_004936481:9,823,790...9,847,291 JBrowse link
G Cbs cystathionine beta-synthase acts_upstream_of_or_within ISO (MGI:3607901|PMID:16160063) MGI PMID:16160063 MGI:3607901 NCBI chrNW_004936500:976,043...1,003,559 JBrowse link
G Gnpat glyceronephosphate O-acyltransferase acts_upstream_of_or_within ISO (MGI:3843561|PMID:19270340) MGI PMID:19270340 MGI:3843561 NCBI chrNW_004936484:19,414,094...19,434,929 JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO (MGI:3695500|PMID:17166916) MGI PMID:17166916 MGI:3695500 NCBI chrNW_004936487:14,513,303...14,587,771 JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:1891551|PMID:11029008) MGI PMID:11029008 MGI:1891551 NCBI chrNW_004936587:5,065,200...5,143,029 JBrowse link
G Skor2 SKI family transcriptional corepressor 2 acts_upstream_of_or_within ISO (MGI:5300220|PMID:21937600) MGI PMID:21937600 MGI:5300220 NCBI chrNW_004936983:156,466...197,281 JBrowse link
G Xrcc1 X-ray repair cross complementing 1 involved_in ISO (MGI:5902647|PMID:28002403) UniProt PMID:28002403 MGI:5902647 NCBI chrNW_004936706:752,571...783,746 JBrowse link
cerebellum structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dab1 DAB adaptor protein 1 acts_upstream_of_or_within ISO (MGI:1098179|PMID:9338785) MGI PMID:9338785 MGI:1098179 NCBI chrNW_004936522:3,498,395...4,612,560 JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 involved_in ISO (MGI:4437543|PMID:19816510) BHF-UCL PMID:19816510 MGI:4437543 NCBI chrNW_004936487:13,348,465...13,352,717 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12295
    developmental process 5793
      anatomical structure morphogenesis 2568
        hindbrain morphogenesis 60
          cerebellum morphogenesis + 56
          hindbrain formation + 1
          hindbrain structural organization + 2
          medulla oblongata morphogenesis + 0
          pons morphogenesis + 0
Path 2
Term Annotations click to browse term
  biological_process 12295
    developmental process 5793
      anatomical structure development 5417
        multicellular organism development 4956
          system development 4647
            nervous system development 2406
              central nervous system development 1153
                brain development 912
                  hindbrain development 211
                    hindbrain morphogenesis 60
                      cerebellum morphogenesis + 56
                      hindbrain formation + 1
                      hindbrain structural organization + 2
                      medulla oblongata morphogenesis + 0
                      pons morphogenesis + 0
paths to the root