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ONTOLOGY REPORT - ANNOTATIONS

Term:hindbrain morphogenesis
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Accession:GO:0021575 term browser browse the term
Definition:The process in which the anatomical structure of the hindbrain is generated and organized. The hindbrain is the region consisting of the medulla, pons and cerebellum. Areas of the hindbrain control motor and autonomic functions.
Synonyms:related_synonym: rhombencephalon morphogenesis


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hindbrain morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlc1 deleted in liver cancer 1 acts_upstream_of_or_within IMP (PMID:15710412) MGI PMID:15710412 NCBI chr 8:37,034,893...37,420,343
Ensembl chr 8:37,034,905...37,420,297 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within IMP (PMID:9398437) MGI PMID:9398437 NCBI chr 5:75,236,262...75,238,554
Ensembl chr 5:75,236,262...75,238,554 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within IGI (PMID:11500373) MGI PMID:11500373 NCBI chr16:29,883,259...29,886,614
Ensembl chr16:29,883,202...29,886,614 		JBrowse link
G Hes3 hes family bHLH transcription factor 3 acts_upstream_of_or_within IGI (PMID:11500373) MGI PMID:11500373 NCBI chr 4:152,369,707...152,376,133
Ensembl chr 4:152,370,429...152,376,119 		JBrowse link
cerebellar cortex formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5 cyclin dependent kinase 5 acts_upstream_of_or_within IMP (PMID:10407039) MGI PMID:10407039 NCBI chr 5:24,612,595...24,628,737
Ensembl chr 5:24,623,239...24,628,528 		JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 acts_upstream_of_or_within IGI (PMID:24431450) MGI PMID:24431450 NCBI chr 9:64,093,066...64,160,887
Ensembl chr 9:64,093,052...64,160,913 		JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 acts_upstream_of_or_within IMP
IGI		 (PMID:24431450) MGI PMID:24431450 NCBI chr 5:121,268,596...121,329,460
Ensembl chr 5:121,268,596...121,329,460 		JBrowse link
cerebellar cortex morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Comt catechol-O-methyltransferase acts_upstream_of_or_within IMP (PMID:28556830) MGI PMID:28556830 NCBI chr16:18,225,632...18,247,006
Ensembl chr16:18,225,636...18,245,602 		JBrowse link
G Gli1 GLI-Kruppel family member GLI1 acts_upstream_of_or_within IGI (PMID:16571625) MGI PMID:16571625 NCBI chr10:127,165,751...127,177,448
Ensembl chr10:127,165,751...127,177,843 		JBrowse link
G Gli2 GLI-Kruppel family member GLI2 acts_upstream_of_or_within IMP
IGI		 (PMID:16571625) MGI PMID:16571625 NCBI chr 1:118,761,791...118,987,578
Ensembl chr 1:118,761,862...118,981,349 		JBrowse link
G Nfix nuclear factor I/X acts_upstream_of_or_within IMP (PMID:30503862) MGI PMID:30503862 NCBI chr 8:85,431,341...85,527,086
Ensembl chr 8:85,426,505...85,526,973 		JBrowse link
G Pcnt pericentrin (kendrin) acts_upstream_of_or_within IMP (PMID:20096683) MGI PMID:20096683 NCBI chr10:76,187,098...76,279,988
Ensembl chr10:76,187,097...76,278,620 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within IMP (PMID:16571625) MGI PMID:16571625 NCBI chr 6:29,735,480...29,761,359
Ensembl chr 6:29,735,502...29,761,364 		JBrowse link
G Trnp1 TMF1-regulated nuclear protein 1 involved_in IMP (MGI:5490679|PMID:23622239) UniProt PMID:23622239 MGI:5490679 NCBI chr 4:133,218,408...133,226,446
Ensembl chr 4:133,218,411...133,225,861 		JBrowse link
G Tuba1a tubulin, alpha 1A involved_in IMP (PMID:17218254) MGI PMID:17218254 NCBI chr15:98,847,728...98,851,382
Ensembl chr15:98,847,718...98,851,584 		JBrowse link
cerebellar cortex structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pantr2 POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2 acts_upstream_of_or_within IMP (PMID:24381249) MGI PMID:24381249 NCBI chr 1:42,746,221...42,752,614
Ensembl chr 1:42,746,206...42,752,940 		JBrowse link
G Usp9x ubiquitin specific peptidase 9, X chromosome acts_upstream_of_or_within IMP (PMID:23861879) MGI PMID:23861879 NCBI chr  X:12,937,221...13,039,567
Ensembl chr  X:12,937,737...13,039,567 		JBrowse link
cerebellar granular layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Serpine2 serine (or cysteine) peptidase inhibitor, clade E, member 2 acts_upstream_of_or_within IMP (PMID:17409116) MGI PMID:17409116 NCBI chr 1:79,772,038...79,836,382
Ensembl chr 1:79,771,914...79,838,897 		JBrowse link
cerebellar granular layer structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif14 kinesin family member 14 involved_in IMP (MGI:5485315|PMID:23308235) UniProt PMID:23308235 MGI:5485315 NCBI chr 1:136,394,044...136,483,676
Ensembl chr 1:136,394,081...136,459,249 		JBrowse link
cerebellar granule cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase, Ca++ transporting, plasma membrane 2 acts_upstream_of_or_within IMP (PMID:9668038) MGI PMID:9668038 NCBI chr 6:113,720,803...114,019,574
Ensembl chr 6:113,720,792...114,019,574 		JBrowse link
G Cbln1 cerebellin 1 precursor protein involved_in IGI (MGI:4839424|PMID:20537373) BHF-UCL PMID:20537373 MGI:4839424 NCBI chr 8:88,195,481...88,199,220
Ensembl chr 8:88,195,033...88,199,237 		JBrowse link
G Grid2 glutamate receptor, ionotropic, delta 2 involved_in IGI (MGI:4839424|PMID:20537373) BHF-UCL PMID:20537373 MGI:4839424 NCBI chr 6:63,230,118...64,681,305
Ensembl chr 6:63,232,860...64,681,307 		JBrowse link
G Kndc1 kinase non-catalytic C-lobe domain (KIND) containing 1 acts_upstream_of_or_within IMP (PMID:17984326) MGI PMID:17984326 NCBI chr 7:139,474,612...139,521,453
Ensembl chr 7:139,474,612...139,521,450 		JBrowse link
G Mtpn myotrophin ISO RGD PMID:8144589 RGD:632797 NCBI chr 6:35,485,759...35,516,823
Ensembl chr 6:35,485,841...35,516,823 		JBrowse link
G Nfix nuclear factor I/X involved_in
acts_upstream_of_or_within		 IMP (PMID:23042739)
(PMID:21800304)		 MGI PMID:21800304 PMID:23042739 NCBI chr 8:85,431,341...85,527,086
Ensembl chr 8:85,426,505...85,526,973 		JBrowse link
G Nrxn1 neurexin I involved_in IGI (MGI:4839424|PMID:20537373) BHF-UCL PMID:20537373 MGI:4839424 NCBI chr17:90,341,072...91,400,587
Ensembl chr17:90,341,059...91,400,499 		JBrowse link
G Ophn1 oligophrenin 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr  X:97,597,886...97,934,691
Ensembl chr  X:97,597,883...97,934,631 		JBrowse link
G Prox1 prospero homeobox 1 involved_in IMP (MGI:4849596|PMID:20808958) BHF-UCL PMID:20808958 MGI:4849596 NCBI chr 1:189,850,232...189,903,024
Ensembl chr 1:189,850,232...189,902,911 		JBrowse link
G Top2a topoisomerase (DNA) II alpha ISO RGD PMID:11170002 RGD:8693630 NCBI chr11:98,883,773...98,915,037
Ensembl chr11:98,883,769...98,915,015 		JBrowse link
G Ulk1 unc-51 like kinase 1 acts_upstream_of_or_within IMP (PMID:10624947) MGI PMID:10624947 NCBI chr 5:110,932,355...110,957,991
Ensembl chr 5:110,932,354...110,957,963 		JBrowse link
G Wnt7a wingless-type MMTV integration site family, member 7A acts_upstream_of_or_within IDA (PMID:9405095) MGI PMID:9405095 NCBI chr 6:91,340,963...91,388,335
Ensembl chr 6:91,340,963...91,388,345 		JBrowse link
cerebellar molecular layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 involved_in IMP (MGI:5504540|PMID:23688253) UniProt PMID:23688253 MGI:5504540 NCBI chr17:15,587,616...15,597,275
Ensembl chr17:15,587,616...15,597,134 		JBrowse link
cerebellar molecular layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zfp365 zinc finger protein 365 involved_in IMP (MGI:5559035|PMID:23912123) UniProt PMID:23912123 MGI:5559035 NCBI chr10:67,721,935...67,748,492
Ensembl chr10:67,721,933...67,748,492 		JBrowse link
cerebellar Purkinje cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agtpbp1 ATP/GTP binding protein 1 involved_in
acts_upstream_of_or_within		 IMP
IGI		 (MGI:2159417|PMID:11884758), (MGI:3614720|PMID:16465590), (MGI:4849873|PMID:21074048)
(PMID:10630211)
(PMID:30420556)		 UniProt
MGI		 PMID:10630211 PMID:11884758 PMID:16465590 PMID:21074048 PMID:30420556 MGI:2159417 MGI:3614720 MGI:4849873 NCBI chr13:59,597,348...59,705,184
Ensembl chr13:59,593,556...59,733,041 		JBrowse link
G Atp2b2 ATPase, Ca++ transporting, plasma membrane 2 acts_upstream_of_or_within IMP (PMID:9668038) MGI PMID:9668038 NCBI chr 6:113,720,803...114,019,574
Ensembl chr 6:113,720,792...114,019,574 		JBrowse link
G Atp7a ATPase, Cu++ transporting, alpha polypeptide acts_upstream_of_or_within IMP (PMID:2473662) MGI PMID:2473662 NCBI chr  X:105,070,830...105,171,766
Ensembl chr  X:105,070,882...105,168,532 		JBrowse link
G Atxn2 ataxin 2 acts_upstream_of_or_within IMP (PMID:10973246) MGI PMID:10973246 NCBI chr 5:121,849,794...121,954,372
Ensembl chr 5:121,849,400...121,954,556 		JBrowse link
G Cacna1a calcium channel, voltage-dependent, P/Q type, alpha 1A subunit acts_upstream_of_or_within IMP (PMID:7834360)
(PMID:1306163)
(PMID:10630211)		 MGI PMID:1306163 PMID:7834360 PMID:10630211 NCBI chr 8:85,065,257...85,366,880
Ensembl chr 8:85,065,268...85,366,875 		JBrowse link
G Cend1 cell cycle exit and neuronal differentiation 1 acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:20153830) MGI
GO_Central		 PMID:20153830 GO_REF:0000033 NCBI chr 7:141,006,359...141,009,475
Ensembl chr 7:141,006,359...141,009,404 		JBrowse link
G Faim2 Fas apoptotic inhibitory molecule 2 involved_in IMP (MGI:5295128|PMID:21957071) UniProt PMID:21957071 MGI:5295128 NCBI chr15:99,394,886...99,432,757
Ensembl chr15:99,394,893...99,426,046 		JBrowse link
G Foxp2 forkhead box P2 involved_in IMP (PMID:22133810) MGI PMID:22133810 NCBI chr 6:14,901,348...15,441,976
Ensembl chr 6:14,901,348...15,441,976 		JBrowse link
G Herc1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 acts_upstream_of_or_within IMP (PMID:20041218) MGI PMID:20041218 NCBI chr 9:66,257,694...66,416,057
Ensembl chr 9:66,257,732...66,416,057 		JBrowse link
G Ldb1 LIM domain binding 1 acts_upstream_of_or_within IMP (PMID:17664423) MGI PMID:17664423 NCBI chr19:46,019,963...46,036,584
Ensembl chr19:46,020,009...46,033,653 		JBrowse link
G Lhx1 LIM homeobox protein 1 acts_upstream_of_or_within IGI (PMID:17664423) MGI PMID:17664423 NCBI chr11:84,408,801...84,416,360
Ensembl chr11:84,409,110...84,416,361 		JBrowse link
G Lhx5 LIM homeobox protein 5 acts_upstream_of_or_within IGI (PMID:17664423) MGI PMID:17664423 NCBI chr 5:120,569,951...120,579,522
Ensembl chr 5:120,569,764...120,579,288 		JBrowse link
G Psap prosaposin acts_upstream_of_or_within IMP (PMID:15345707) MGI PMID:15345707 NCBI chr10:60,113,436...60,138,379
Ensembl chr10:60,113,449...60,138,376 		JBrowse link
G Rora RAR-related orphan receptor alpha acts_upstream_of_or_within IMP (PMID:8996814) MGI PMID:8996814 NCBI chr 9:68,560,627...69,295,528
Ensembl chr 9:68,561,068...69,295,528 		JBrowse link
G Skor2 SKI family transcriptional corepressor 2 acts_upstream_of_or_within IMP (PMID:21937600)
(PMID:24491816)		 MGI PMID:21937600 PMID:24491816 NCBI chr18:76,934,428...76,988,759
Ensembl chr18:76,944,100...76,988,037 		JBrowse link
G Slc25a46 solute carrier family 25, member 46 acts_upstream_of_or_within IMP (PMID:28934388) MGI PMID:28934388 NCBI chr18:31,713,217...31,743,585
Ensembl chr18:31,689,164...31,742,964 		JBrowse link
G Top2a topoisomerase (DNA) II alpha ISO RGD PMID:11170002 RGD:8693630 NCBI chr11:98,883,773...98,915,037
Ensembl chr11:98,883,769...98,915,015 		JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B acts_upstream_of_or_within IMP (PMID:29615573) MGI PMID:29615573 NCBI chr 2:66,014,131...66,087,144
Ensembl chr 2:66,014,671...66,086,961 		JBrowse link
G Ttll1 tubulin tyrosine ligase-like 1 acts_upstream_of_or_within IGI (PMID:30420556) MGI PMID:30420556 NCBI chr15:83,367,258...83,402,675
Ensembl chr15:83,367,970...83,395,094 		JBrowse link
cerebellar Purkinje cell layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within IMP (PMID:17954912) MGI PMID:17954912 NCBI chr 3:89,110,235...89,119,944
Ensembl chr 3:89,110,235...89,116,273 		JBrowse link
G Whrn whirlin involved_in IMP (MGI:5516521|PMID:24011083) CACAO PMID:24011083 MGI:5516521 NCBI chr 4:63,333,145...63,414,320
Ensembl chr 4:63,333,147...63,414,228 		JBrowse link
cerebellar Purkinje cell layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase, Ca++ transporting, plasma membrane 2 acts_upstream_of_or_within IMP (PMID:17409239) MGI PMID:17409239 NCBI chr 6:113,720,803...114,019,574
Ensembl chr 6:113,720,792...114,019,574 		JBrowse link
G Cntnap2 contactin associated protein-like 2 involved_in IMP (PMID:32675284) MGI PMID:32675284 NCBI chr 6:45,036,995...47,278,330
Ensembl chr 6:45,036,291...47,281,147 		JBrowse link
G Coq8b coenzyme Q8B involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 7:26,928,112...26,957,374
Ensembl chr 7:26,932,448...26,957,375 		JBrowse link
G Sptbn2 spectrin beta, non-erythrocytic 2 acts_upstream_of_or_within IMP (PMID:20231455) MGI PMID:20231455 NCBI chr19:4,761,236...4,804,006
Ensembl chr19:4,761,195...4,802,388 		JBrowse link
cerebellar Purkinje cell layer structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 involved_in IMP (MGI:5504540|PMID:23688253) UniProt PMID:23688253 MGI:5504540 NCBI chr17:15,587,616...15,597,275
Ensembl chr17:15,587,616...15,597,134 		JBrowse link
G Kif14 kinesin family member 14 involved_in IMP (MGI:5485315|PMID:23308235) UniProt PMID:23308235 MGI:5485315 NCBI chr 1:136,394,044...136,483,676
Ensembl chr 1:136,394,081...136,459,249 		JBrowse link
cerebellum formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt1 wingless-type MMTV integration site family, member 1 involved_in IMP (MGI:1931348|PMID:2202907) BHF-UCL PMID:2202907 MGI:1931348 NCBI chr15:98,687,738...98,691,711
Ensembl chr15:98,687,738...98,691,718 		JBrowse link
cerebellum morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 c-abl oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within IGI (PMID:20980600) MGI PMID:20980600 NCBI chr 2:31,578,256...31,697,105
Ensembl chr 2:31,578,388...31,694,239 		JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within IGI (PMID:20980600) MGI PMID:20980600 NCBI chr 1:156,386,160...156,477,189
Ensembl chr 1:156,386,356...156,477,138 		JBrowse link
G Cbs cystathionine beta-synthase acts_upstream_of_or_within IMP (PMID:16160063) MGI PMID:16160063 NCBI chr17:31,831,602...31,856,170
Ensembl chr17:31,827,868...31,856,212 		JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within IMP (PMID:11456442) MGI PMID:11456442 NCBI chr13:60,322,219...60,325,179
Ensembl chr13:60,322,219...60,325,179 		JBrowse link
G Gnpat glyceronephosphate O-acyltransferase acts_upstream_of_or_within IMP (PMID:19270340) MGI PMID:19270340 NCBI chr 8:125,589,772...125,616,796
Ensembl chr 8:125,589,772...125,616,796 		JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within IMP (PMID:17166916) MGI PMID:17166916 NCBI chr 2:33,450,977...33,531,219
Ensembl chr 2:33,450,977...33,530,620 		JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IMP (PMID:11029008) MGI PMID:11029008 NCBI chr 6:134,423,439...134,543,876
Ensembl chr 6:134,423,439...134,543,928 		JBrowse link
G Skor2 SKI family transcriptional corepressor 2 acts_upstream_of_or_within IMP (PMID:21937600) MGI PMID:21937600 NCBI chr18:76,934,428...76,988,759
Ensembl chr18:76,944,100...76,988,037 		JBrowse link
G Xrcc1 X-ray repair complementing defective repair in Chinese hamster cells 1 involved_in IMP (MGI:5902647|PMID:28002403) UniProt PMID:28002403 MGI:5902647 NCBI chr 7:24,246,124...24,272,863
Ensembl chr 7:24,245,714...24,272,865 		JBrowse link
cerebellum structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dab1 disabled 1 acts_upstream_of_or_within IMP (PMID:9338785) MGI PMID:9338785 NCBI chr 4:103,476,425...104,602,041
Ensembl chr 4:103,476,556...104,602,041 		JBrowse link
G Hspa5 heat shock protein 5 involved_in IMP (MGI:4437543|PMID:19816510) BHF-UCL PMID:19816510 MGI:4437543 NCBI chr 2:34,662,102...34,666,541
Ensembl chr 2:34,661,982...34,667,559 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28573
    developmental process 7363
      anatomical structure morphogenesis 3037
        hindbrain morphogenesis 65
          cerebellum morphogenesis + 61
          hindbrain formation + 1
          hindbrain structural organization + 2
          medulla oblongata morphogenesis + 0
          pons morphogenesis + 0
Path 2
Term Annotations click to browse term
  biological_process 28573
    developmental process 7363
      anatomical structure development 6834
        multicellular organism development 5426
          system development 4651
            nervous system development 2845
              central nervous system development 1218
                brain development 909
                  hindbrain development 231
                    hindbrain morphogenesis 65
                      cerebellum morphogenesis + 61
                      hindbrain formation + 1
                      hindbrain structural organization + 2
                      medulla oblongata morphogenesis + 0
                      pons morphogenesis + 0
paths to the root