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ONTOLOGY REPORT - ANNOTATIONS


Term:hindbrain morphogenesis
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Accession:GO:0021575 term browser browse the term
Definition:The process in which the anatomical structure of the hindbrain is generated and organized. The hindbrain is the region consisting of the medulla, pons and cerebellum. Areas of the hindbrain control motor and autonomic functions.
Synonyms:related_synonym: rhombencephalon morphogenesis



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hindbrain morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlc1 deleted in liver cancer 1 acts_upstream_of_or_within IMP (MGI:3529660|PMID:15710412) MGI PMID:15710412 MGI:3529660 NCBI chr 8:36,567,739...36,953,184
Ensembl chr 8:36,567,751...36,953,143
JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within IMP (MGI:1099899|PMID:9398437) MGI PMID:9398437 MGI:1099899 NCBI chr 5:75,075,601...75,077,893
Ensembl chr 5:75,075,601...75,077,893
JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within IGI (MGI:2149154|PMID:11500373) MGI PMID:11500373 MGI:2149154 NCBI chr16:30,065,357...30,067,796
Ensembl chr16:30,064,384...30,067,796
JBrowse link
G Hes3 hes family bHLH transcription factor 3 acts_upstream_of_or_within IGI (MGI:2149154|PMID:11500373) MGI PMID:11500373 MGI:2149154 NCBI chr 4:152,285,250...152,291,911
Ensembl chr 4:152,285,972...152,291,662
JBrowse link
cerebellar cortex formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5 cyclin-dependent kinase 5 acts_upstream_of_or_within IMP (MGI:1340775|PMID:10407039) MGI PMID:10407039 MGI:1340775 NCBI chr 5:24,407,597...24,423,587
Ensembl chr 5:24,418,241...24,423,530
JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 acts_upstream_of_or_within IGI (MGI:5545830|PMID:24431450) MGI PMID:24431450 MGI:5545830 NCBI chr 9:64,185,769...64,253,605
Ensembl chr 9:64,185,770...64,253,631
JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 acts_upstream_of_or_within IMP
IGI
(MGI:5545830|PMID:24431450) MGI PMID:24431450 MGI:5545830 NCBI chr 5:121,130,533...121,191,397
Ensembl chr 5:121,130,533...121,191,397
JBrowse link
cerebellar cortex morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli1 GLI-Kruppel family member GLI1 acts_upstream_of_or_within IGI (MGI:3624180|PMID:16571625) MGI PMID:16571625 MGI:3624180 NCBI chr10:127,329,882...127,341,579
Ensembl chr10:127,329,882...127,341,974
JBrowse link
G Gli2 GLI-Kruppel family member GLI2 acts_upstream_of_or_within IGI
IMP
(MGI:3624180|PMID:16571625) MGI PMID:16571625 MGI:3624180 NCBI chr 1:118,834,061...119,054,405
Ensembl chr 1:118,834,132...119,053,619
JBrowse link
G Pcnt pericentrin (kendrin) acts_upstream_of_or_within IMP (MGI:4438783|PMID:20096683) MGI PMID:20096683 MGI:4438783 NCBI chr10:76,351,254...76,442,912
Ensembl chr10:76,351,263...76,442,786
JBrowse link
G Rfx4 regulatory factor X, 4 (influences HLA class II expression) acts_upstream_of_or_within IMP (MGI:2669568|PMID:12925582) MGI PMID:12925582 MGI:2669568 NCBI chr10:84,756,036...84,906,538
Ensembl chr10:84,756,062...84,906,538
JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within IMP (MGI:3624180|PMID:16571625) MGI PMID:16571625 MGI:3624180 NCBI chr 6:29,735,497...29,761,366
Ensembl chr 6:29,735,503...29,761,365
JBrowse link
G Trnp1 TMF1-regulated nuclear protein 1 involved_in IMP (MGI:5490679|PMID:23622239) UniProt PMID:23622239 MGI:5490679 NCBI chr 4:133,491,097...133,499,645
Ensembl chr 4:133,491,100...133,498,550
JBrowse link
cerebellar cortex structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pantr2 POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2 acts_upstream_of_or_within IMP (MGI:5532193|PMID:24381249) MGI PMID:24381249 MGI:5532193 NCBI chr 1:42,707,061...42,713,454
Ensembl chr 1:42,707,061...42,713,454
JBrowse link
G Usp9x ubiquitin specific peptidase 9, X chromosome acts_upstream_of_or_within IMP (MGI:5532214|PMID:23861879) MGI PMID:23861879 MGI:5532214 NCBI chr  X:13,070,982...13,173,328
Ensembl chr  X:13,071,498...13,173,328
JBrowse link
cerebellar granular layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Serpine2 serine (or cysteine) peptidase inhibitor, clade E, member 2 acts_upstream_of_or_within IMP (MGI:3709698|PMID:17409116) MGI PMID:17409116 MGI:3709698 NCBI chr 1:79,794,317...79,858,665
Ensembl chr 1:79,794,197...79,861,180
JBrowse link
cerebellar granular layer structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif14 kinesin family member 14 involved_in IMP (MGI:5485315|PMID:23308235) UniProt PMID:23308235 MGI:5485315 NCBI chr 1:136,466,301...136,555,938
Ensembl chr 1:136,466,343...136,531,511
JBrowse link
cerebellar granule cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase, Ca++ transporting, plasma membrane 2 acts_upstream_of_or_within IMP (MGI:1275896|PMID:9668038) MGI PMID:9668038 MGI:1275896 NCBI chr 6:113,743,831...114,042,613
Ensembl chr 6:113,743,831...114,042,613
JBrowse link
G Cbln1 cerebellin 1 precursor protein involved_in IGI (MGI:4839424|PMID:20537373) BHF-UCL PMID:20537373 MGI:4839424 NCBI chr 8:87,468,853...87,472,592
Ensembl chr 8:87,468,405...87,472,609
JBrowse link
G Grid2 glutamate receptor, ionotropic, delta 2 involved_in IGI (MGI:4839424|PMID:20537373) BHF-UCL PMID:20537373 MGI:4839424 NCBI chr 6:63,256,006...64,704,321
Ensembl chr 6:63,255,876...64,704,323
JBrowse link
G Kndc1 kinase non-catalytic C-lobe domain (KIND) containing 1 acts_upstream_of_or_within IMP (MGI:3769586|PMID:17984326) MGI PMID:17984326 MGI:3769586 NCBI chr 7:139,894,696...139,941,540
Ensembl chr 7:139,894,696...139,941,537
JBrowse link
G Mtpn myotrophin ISO RGD PMID:8144589 RGD:632797 NCBI chr 6:35,508,824...35,539,888
Ensembl chr 6:35,508,906...35,539,888
JBrowse link
G Nfix nuclear factor I/X acts_upstream_of_or_within IMP (MGI:5436217|PMID:21800304) MGI PMID:21800304 MGI:5436217 NCBI chr 8:84,704,712...84,801,238
Ensembl chr 8:84,699,876...84,800,344
JBrowse link
G Nrxn1 neurexin I involved_in IGI (MGI:4839424|PMID:20537373) BHF-UCL PMID:20537373 MGI:4839424 NCBI chr17:90,033,644...91,093,159
Ensembl chr17:90,033,631...91,093,071
JBrowse link
G Ophn1 oligophrenin 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr  X:98,554,280...98,891,082
Ensembl chr  X:98,554,277...98,891,025
JBrowse link
G Prox1 prospero homeobox 1 involved_in IMP (MGI:4849596|PMID:20808958) BHF-UCL PMID:20808958 MGI:4849596 NCBI chr 1:190,118,035...190,170,827
Ensembl chr 1:190,118,035...190,170,714
JBrowse link
G Top2a topoisomerase (DNA) II alpha ISO RGD PMID:11170002 RGD:8693630 NCBI chr11:98,992,947...99,024,199
Ensembl chr11:98,992,943...99,024,189
JBrowse link
G Ulk1 unc-51 like kinase 1 acts_upstream_of_or_within IMP (MGI:1351063|PMID:10624947) MGI PMID:10624947 MGI:1351063 NCBI chr 5:110,784,489...110,810,120
Ensembl chr 5:110,784,488...110,810,097
JBrowse link
G Wnt7a wingless-type MMTV integration site family, member 7A acts_upstream_of_or_within IDA (MGI:1195230|PMID:9405095) MGI PMID:9405095 MGI:1195230 NCBI chr 6:91,363,981...91,411,353
Ensembl chr 6:91,363,981...91,411,363
JBrowse link
cerebellar molecular layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 involved_in IMP (MGI:5504540|PMID:23688253) UniProt PMID:23688253 MGI:5504540 NCBI chr17:15,367,354...15,376,932
Ensembl chr17:15,367,354...15,376,872
JBrowse link
cerebellar molecular layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zfp365 zinc finger protein 365 involved_in IMP (MGI:5559035|PMID:23912123) UniProt PMID:23912123 MGI:5559035 NCBI chr10:67,886,105...67,912,662
Ensembl chr10:67,886,103...67,912,662
JBrowse link
cerebellar Purkinje cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agtpbp1 ATP/GTP binding protein 1 involved_in
acts_upstream_of_or_within
IMP
IGI
(MGI:2159417|PMID:11884758), (MGI:3614720|PMID:16465590), (MGI:4849873|PMID:21074048)
(MGI:6269036|PMID:30420556)
(MGI:1347769|PMID:10630211)
UniProt
MGI
PMID:10630211 PMID:11884758 PMID:16465590 PMID:21074048 PMID:30420556 MGI:1347769 MGI:2159417 MGI:3614720 MGI:4849873 MGI:6269036 NCBI chr13:59,449,534...59,557,370
Ensembl chr13:59,445,742...59,585,227
JBrowse link
G Atp2b2 ATPase, Ca++ transporting, plasma membrane 2 acts_upstream_of_or_within IMP (MGI:1275896|PMID:9668038) MGI PMID:9668038 MGI:1275896 NCBI chr 6:113,743,831...114,042,613
Ensembl chr 6:113,743,831...114,042,613
JBrowse link
G Atp7a ATPase, Cu++ transporting, alpha polypeptide acts_upstream_of_or_within IMP (MGI:71790|PMID:2473662) MGI PMID:2473662 MGI:71790 NCBI chr  X:106,027,224...106,128,161
Ensembl chr  X:106,027,276...106,124,926
JBrowse link
G Atxn2 ataxin 2 acts_upstream_of_or_within IMP (MGI:3510013|PMID:10973246) MGI PMID:10973246 MGI:3510013 NCBI chr 5:121,711,609...121,814,950
Ensembl chr 5:121,711,337...121,816,493
JBrowse link
G Cacna1a calcium channel, voltage-dependent, P/Q type, alpha 1A subunit acts_upstream_of_or_within IMP (MGI:68980|PMID:7834360)
(MGI:62667|PMID:1306163)
(MGI:1347769|PMID:10630211)
MGI PMID:1306163 PMID:7834360 PMID:10630211 MGI:1347769 MGI:62667 MGI:68980 NCBI chr 8:84,338,631...84,640,251
Ensembl chr 8:84,338,639...84,640,246
JBrowse link
G Cend1 cell cycle exit and neuronal differentiation 1 involved_in
acts_upstream_of_or_within
IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:4830814|PMID:20153830)
GO_Central
MGI
PMID:20153830 PMID:21873635 MGI:4830814 MGI:6201960 NCBI chr 7:141,426,446...141,429,562
Ensembl chr 7:141,426,446...141,429,491
JBrowse link
G Faim2 Fas apoptotic inhibitory molecule 2 involved_in IMP (MGI:5295128|PMID:21957071) UniProt PMID:21957071 MGI:5295128 NCBI chr15:99,497,005...99,534,880
Ensembl chr15:99,497,012...99,528,165
JBrowse link
G Foxp2 forkhead box P2 involved_in IMP (MGI:5306536|PMID:22133810) MGI PMID:22133810 MGI:5306536 NCBI chr 6:14,901,349...15,441,977
Ensembl chr 6:14,901,349...15,441,977
JBrowse link
G Herc1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 acts_upstream_of_or_within IMP (MGI:4461108|PMID:20041218) MGI PMID:20041218 MGI:4461108 NCBI chr 9:66,350,412...66,508,775
Ensembl chr 9:66,350,450...66,508,775
JBrowse link
G Ldb1 LIM domain binding 1 acts_upstream_of_or_within IMP (MGI:3718715|PMID:17664423) MGI PMID:17664423 MGI:3718715 NCBI chr19:46,031,525...46,048,145
Ensembl chr19:46,031,570...46,045,214
JBrowse link
G Lhx1 LIM homeobox protein 1 acts_upstream_of_or_within IGI (MGI:3718715|PMID:17664423) MGI PMID:17664423 MGI:3718715 NCBI chr11:84,517,975...84,525,534
Ensembl chr11:84,518,284...84,525,535
JBrowse link
G Lhx5 LIM homeobox protein 5 acts_upstream_of_or_within IGI (MGI:3718715|PMID:17664423) MGI PMID:17664423 MGI:3718715 NCBI chr 5:120,431,886...120,441,457
Ensembl chr 5:120,431,699...120,441,223
JBrowse link
G Psap prosaposin acts_upstream_of_or_within IMP (MGI:3512714|PMID:15345707) MGI PMID:15345707 MGI:3512714 NCBI chr10:60,277,628...60,302,600
Ensembl chr10:60,277,627...60,302,597
JBrowse link
G Rora RAR-related orphan receptor alpha acts_upstream_of_or_within IMP (MGI:86446|PMID:8996814) MGI PMID:8996814 MGI:86446 NCBI chr 9:68,653,404...69,388,246
Ensembl chr 9:68,653,786...69,388,246
JBrowse link
G Skor2 SKI family transcriptional corepressor 2 acts_upstream_of_or_within IMP (MGI:5300220|PMID:21937600)
(MGI:5565016|PMID:24491816)
MGI PMID:21937600 PMID:24491816 MGI:5300220 MGI:5565016 NCBI chr18:76,846,733...76,901,064
Ensembl chr18:76,856,405...76,900,342
JBrowse link
G Slc25a46 solute carrier family 25, member 46 acts_upstream_of_or_within IMP (MGI:5921109|PMID:28934388) MGI PMID:28934388 MGI:5921109 NCBI chr18:31,580,164...31,610,532
Ensembl chr18:31,556,111...31,609,911
JBrowse link
G Top2a topoisomerase (DNA) II alpha ISO RGD PMID:11170002 RGD:8693630 NCBI chr11:98,992,947...99,024,199
Ensembl chr11:98,992,943...99,024,189
JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B acts_upstream_of_or_within IMP (MGI:6152587|PMID:29615573) MGI PMID:29615573 MGI:6152587 NCBI chr 2:66,183,787...66,256,674
Ensembl chr 2:66,184,327...66,256,617
JBrowse link
G Ttll1 tubulin tyrosine ligase-like 1 acts_upstream_of_or_within IGI (MGI:6269036|PMID:30420556) MGI PMID:30420556 MGI:6269036 NCBI chr15:83,483,057...83,518,474
Ensembl chr15:83,483,769...83,510,893
JBrowse link
cerebellar Purkinje cell layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gba glucosidase, beta, acid acts_upstream_of_or_within IMP (MGI:3762988|PMID:17954912) MGI PMID:17954912 MGI:3762988 NCBI chr 3:89,202,905...89,208,873
Ensembl chr 3:89,202,928...89,208,966
JBrowse link
G Whrn whirlin involved_in IMP (MGI:5516521|PMID:24011083) CACAO PMID:24011083 MGI:5516521 NCBI chr 4:63,414,908...63,496,083
Ensembl chr 4:63,414,910...63,495,991
JBrowse link
cerebellar Purkinje cell layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase, Ca++ transporting, plasma membrane 2 acts_upstream_of_or_within IMP (MGI:3709537|PMID:17409239) MGI PMID:17409239 MGI:3709537 NCBI chr 6:113,743,831...114,042,613
Ensembl chr 6:113,743,831...114,042,613
JBrowse link
G Cntnap2 contactin associated protein-like 2 involved_in IMP (MGI:6477849|PMID:32675284) MGI PMID:32675284 MGI:6477849 NCBI chr 6:45,060,061...47,301,393
Ensembl chr 6:45,059,357...47,304,213
JBrowse link
G Coq8b coenzyme Q8B involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:27,228,676...27,257,949
Ensembl chr 7:27,233,023...27,257,950
JBrowse link
G Sptbn2 spectrin beta, non-erythrocytic 2 acts_upstream_of_or_within IMP (MGI:4438955|PMID:20231455) MGI PMID:20231455 MGI:4438955 NCBI chr19:4,711,208...4,753,978
Ensembl chr19:4,711,167...4,752,360
JBrowse link
cerebellar Purkinje cell layer structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 involved_in IMP (MGI:5504540|PMID:23688253) UniProt PMID:23688253 MGI:5504540 NCBI chr17:15,367,354...15,376,932
Ensembl chr17:15,367,354...15,376,872
JBrowse link
G Kif14 kinesin family member 14 involved_in IMP (MGI:5485315|PMID:23308235) UniProt PMID:23308235 MGI:5485315 NCBI chr 1:136,466,301...136,555,938
Ensembl chr 1:136,466,343...136,531,511
JBrowse link
cerebellum formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt1 wingless-type MMTV integration site family, member 1 involved_in IMP (MGI:1931348|PMID:2202907) BHF-UCL PMID:2202907 MGI:1931348 NCBI chr15:98,789,857...98,793,830
Ensembl chr15:98,789,857...98,793,837
JBrowse link
cerebellum morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 c-abl oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within IGI (MGI:4840122|PMID:20980600) MGI PMID:20980600 MGI:4840122 NCBI chr 2:31,688,244...31,807,093
Ensembl chr 2:31,688,376...31,804,227
JBrowse link
G Abl2 v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) acts_upstream_of_or_within IGI (MGI:4840122|PMID:20980600) MGI PMID:20980600 MGI:4840122 NCBI chr 1:156,558,590...156,649,619
Ensembl chr 1:156,558,786...156,649,568
JBrowse link
G Cbs cystathionine beta-synthase acts_upstream_of_or_within IMP (MGI:3607901|PMID:16160063) MGI PMID:16160063 MGI:3607901 NCBI chr17:31,612,623...31,637,233
Ensembl chr17:31,608,894...31,637,238
JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within IMP (MGI:2138056|PMID:11456442) MGI PMID:11456442 MGI:2138056 NCBI chr13:60,174,405...60,177,535
Ensembl chr13:60,174,405...60,177,365
JBrowse link
G Gnpat glyceronephosphate O-acyltransferase acts_upstream_of_or_within IMP (MGI:3843561|PMID:19270340) MGI PMID:19270340 MGI:3843561 NCBI chr 8:124,863,033...124,890,057
Ensembl chr 8:124,863,033...124,890,057
JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within IMP (MGI:3695500|PMID:17166916) MGI PMID:17166916 MGI:3695500 NCBI chr 2:33,560,965...33,641,208
Ensembl chr 2:33,560,965...33,640,511
Ensembl chr 2:33,560,965...33,640,511
JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IMP (MGI:1891551|PMID:11029008) MGI PMID:11029008 MGI:1891551 NCBI chr 6:134,446,476...134,566,913
Ensembl chr 6:134,446,476...134,566,965
JBrowse link
G Skor2 SKI family transcriptional corepressor 2 acts_upstream_of_or_within IMP (MGI:5300220|PMID:21937600) MGI PMID:21937600 MGI:5300220 NCBI chr18:76,846,733...76,901,064
Ensembl chr18:76,856,405...76,900,342
JBrowse link
G Xrcc1 X-ray repair complementing defective repair in Chinese hamster cells 1 involved_in IMP (MGI:5902647|PMID:28002403) UniProt PMID:28002403 MGI:5902647 NCBI chr 7:24,546,699...24,573,438
Ensembl chr 7:24,546,289...24,573,440
JBrowse link
cerebellum structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dab1 disabled 1 acts_upstream_of_or_within IMP (MGI:1098179|PMID:9338785) MGI PMID:9338785 MGI:1098179 NCBI chr 4:103,619,500...104,744,844
Ensembl chr 4:103,619,359...104,744,844
JBrowse link
G Hspa5 heat shock protein 5 involved_in IMP (MGI:4437543|PMID:19816510) BHF-UCL PMID:19816510 MGI:4437543 NCBI chr 2:34,772,090...34,776,529
Ensembl chr 2:34,771,970...34,777,547
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28627
    developmental process 7102
      anatomical structure morphogenesis 2947
        hindbrain morphogenesis 64
          cerebellum morphogenesis + 60
          hindbrain formation + 1
          hindbrain structural organization + 2
          medulla oblongata morphogenesis + 0
          pons morphogenesis + 0
Path 2
Term Annotations click to browse term
  biological_process 28627
    developmental process 7102
      anatomical structure development 6486
        multicellular organism development 5853
          system development 5484
            nervous system development 2767
              central nervous system development 1275
                brain development 983
                  hindbrain development 224
                    hindbrain morphogenesis 64
                      cerebellum morphogenesis + 60
                      hindbrain formation + 1
                      hindbrain structural organization + 2
                      medulla oblongata morphogenesis + 0
                      pons morphogenesis + 0
paths to the root