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ONTOLOGY REPORT - ANNOTATIONS


Term:hindbrain morphogenesis
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Accession:GO:0021575 term browser browse the term
Definition:The process in which the anatomical structure of the hindbrain is generated and organized. The hindbrain is the region consisting of the medulla, pons and cerebellum. Areas of the hindbrain control motor and autonomic functions.
Synonyms:related_synonym: rhombencephalon morphogenesis


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hindbrain morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlc1 DLC1 Rho GTPase activating protein acts_upstream_of_or_within ISO (MGI:3529660|PMID:15710412) MGI PMID:15710412 MGI:3529660 NCBI chrNW_004955463:3,599,415...3,981,187
Ensembl chrNW_004955463:3,598,985...3,990,849
JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO (MGI:1099899|PMID:9398437) MGI PMID:9398437 MGI:1099899 NCBI chrNW_004955447:16,714,870...16,715,757 JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO (MGI:2149154|PMID:11500373) MGI PMID:11500373 MGI:2149154 NCBI chrNW_004955420:14,565,921...14,568,447
Ensembl chrNW_004955420:14,564,283...14,568,447
JBrowse link
G Hes3 hes family bHLH transcription factor 3 acts_upstream_of_or_within ISO (MGI:2149154|PMID:11500373) MGI PMID:11500373 MGI:2149154 NCBI chrNW_004955486:6,272,757...6,273,721
Ensembl chrNW_004955486:6,272,757...6,273,721
JBrowse link
cerebellar cortex formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5 cyclin dependent kinase 5 acts_upstream_of_or_within ISO (MGI:1340775|PMID:10407039) MGI PMID:10407039 MGI:1340775 NCBI chrNW_004955491:5,491,744...5,497,280
Ensembl chrNW_004955491:5,491,744...5,497,280
JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 acts_upstream_of_or_within ISO (MGI:5545830|PMID:24431450) MGI PMID:24431450 MGI:5545830 NCBI chrNW_004955450:9,181,851...9,205,277
Ensembl chrNW_004955450:9,181,851...9,239,648
JBrowse link
G Ptpn11 protein tyrosine phosphatase non-receptor type 11 acts_upstream_of_or_within ISO (MGI:5545830|PMID:24431450) MGI PMID:24431450 MGI:5545830 NCBI chrNW_004955482:8,934,734...9,031,230
Ensembl chrNW_004955482:8,934,306...9,035,203
JBrowse link
cerebellar cortex morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli1 GLI family zinc finger 1 acts_upstream_of_or_within ISO (MGI:3624180|PMID:16571625) MGI PMID:16571625 MGI:3624180 NCBI chrNW_004955458:5,181,761...5,193,500
Ensembl chrNW_004955458:5,185,225...5,193,196
JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (MGI:3624180|PMID:16571625) MGI PMID:16571625 MGI:3624180 NCBI chrNW_004955459:8,892,917...9,124,672
Ensembl chrNW_004955459:8,892,869...9,118,499
JBrowse link
G Pcnt pericentrin acts_upstream_of_or_within ISO (MGI:4438783|PMID:20096683) MGI PMID:20096683 MGI:4438783 NCBI chrNW_004955407:42,735,078...42,835,851
Ensembl chrNW_004955407:42,735,188...42,835,465
JBrowse link
G Rfx4 regulatory factor X4 acts_upstream_of_or_within ISO (MGI:2669568|PMID:12925582) MGI PMID:12925582 MGI:2669568 NCBI chrNW_004955405:40,483,391...40,648,992
Ensembl chrNW_004955405:40,482,958...40,649,100
JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO (MGI:3624180|PMID:16571625) MGI PMID:16571625 MGI:3624180 NCBI chrNW_004955479:9,963,377...9,991,670
Ensembl chrNW_004955479:9,964,170...9,993,165
JBrowse link
G Trnp1 TMF1 regulated nuclear protein 1 involved_in ISO (MGI:5490679|PMID:23622239) UniProt PMID:23622239 MGI:5490679 NCBI chrNW_004955452:6,335,463...6,341,657 JBrowse link
cerebellar cortex structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Usp9x ubiquitin specific peptidase 9 X-linked acts_upstream_of_or_within ISO (MGI:5532214|PMID:23861879) MGI PMID:23861879 MGI:5532214 NCBI chrNW_004955565:1,479,040...1,602,070
Ensembl chrNW_004955565:1,479,040...1,602,070
JBrowse link
cerebellar granular layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Serpine2 serpin family E member 2 acts_upstream_of_or_within ISO (MGI:3709698|PMID:17409116) MGI PMID:17409116 MGI:3709698 NCBI chrNW_004955453:10,049,822...10,076,155
Ensembl chrNW_004955453:10,027,104...10,076,645
JBrowse link
cerebellar granular layer structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif14 kinesin family member 14 involved_in ISO (MGI:5485315|PMID:23308235) UniProt PMID:23308235 MGI:5485315 NCBI chrNW_004955406:36,732,135...36,791,756
Ensembl chrNW_004955406:36,737,484...36,791,756
JBrowse link
cerebellar granule cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (MGI:1275896|PMID:9668038) MGI PMID:9668038 MGI:1275896 NCBI chrNW_004955561:1,727,935...1,851,907
Ensembl chrNW_004955561:1,727,935...1,851,907
JBrowse link
G Cbln1 cerebellin 1 precursor involved_in ISO (MGI:4839424|PMID:20537373) BHF-UCL PMID:20537373 MGI:4839424 NCBI chrNW_004955433:7,516,487...7,519,929
Ensembl chrNW_004955433:7,516,487...7,519,929
JBrowse link
G Grid2 glutamate ionotropic receptor delta type subunit 2 involved_in ISO (MGI:4839424|PMID:20537373) BHF-UCL PMID:20537373 MGI:4839424 NCBI chrNW_004955405:3,291,793...4,411,249
Ensembl chrNW_004955405:3,344,763...4,443,836
JBrowse link
G Kndc1 kinase non-catalytic C-lobe domain containing 1 acts_upstream_of_or_within ISO (MGI:3769586|PMID:17984326) MGI PMID:17984326 MGI:3769586 NCBI chrNW_004955477:10,792,066...10,850,457
Ensembl chrNW_004955477:10,792,394...10,850,186
JBrowse link
G Mtpn myotrophin ISO RGD PMID:8144589 RGD:632797 NCBI chrNW_004955494:6,805,518...6,844,454
Ensembl chrNW_004955494:6,805,262...6,845,394
JBrowse link
G Nfix nuclear factor I X acts_upstream_of_or_within ISO (MGI:5436217|PMID:21800304) MGI PMID:21800304 MGI:5436217 NCBI chrNW_004955415:32,055,926...32,121,611
Ensembl chrNW_004955415:32,055,375...32,117,833
JBrowse link
G Nrxn1 neurexin 1 involved_in ISO (MGI:4839424|PMID:20537373) BHF-UCL PMID:20537373 MGI:4839424 NCBI chrNW_004955441:16,230,977...17,178,003
Ensembl chrNW_004955441:16,234,070...17,178,005
JBrowse link
G Ophn1 oligophrenin 1 involved_in ISO (PMID:27160703) ARUK-UCL PMID:27160703 NCBI chrNW_004955475:7,576,629...8,019,132
Ensembl chrNW_004955475:7,581,675...8,018,139
JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (MGI:4849596|PMID:20808958) BHF-UCL PMID:20808958 MGI:4849596 NCBI chrNW_004955406:3,715,140...3,770,019
Ensembl chrNW_004955406:3,719,972...3,770,555
JBrowse link
G Top2a DNA topoisomerase II alpha ISO RGD PMID:11170002 RGD:8693630 NCBI chrNW_004955451:14,928,273...14,964,855
Ensembl chrNW_004955451:14,929,136...14,964,723
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 acts_upstream_of_or_within ISO (MGI:1351063|PMID:10624947) MGI PMID:10624947 MGI:1351063 NCBI chrNW_004955482:760,200...777,133
Ensembl chrNW_004955482:761,811...777,133
JBrowse link
G Wnt7a Wnt family member 7A acts_upstream_of_or_within ISO (MGI:1195230|PMID:9405095) MGI PMID:9405095 MGI:1195230 NCBI chrNW_004955429:12,647,993...12,693,998
Ensembl chrNW_004955429:12,647,993...12,694,895
JBrowse link
cerebellar molecular layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 involved_in ISO (MGI:5504540|PMID:23688253) UniProt PMID:23688253 MGI:5504540 NCBI chrNW_004955411:3,478,943...3,486,541
Ensembl chrNW_004955411:3,478,033...3,486,604
JBrowse link
cerebellar molecular layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Znf365 zinc finger protein 365 involved_in ISO (MGI:5559035|PMID:23912123) UniProt PMID:23912123 MGI:5559035 NCBI chrNW_004955425:15,652,373...15,675,255
Ensembl chrNW_004955425:15,652,373...15,675,336
JBrowse link
cerebellar Purkinje cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (MGI:1275896|PMID:9668038) MGI PMID:9668038 MGI:1275896 NCBI chrNW_004955561:1,727,935...1,851,907
Ensembl chrNW_004955561:1,727,935...1,851,907
JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO (MGI:71790|PMID:2473662) MGI PMID:2473662 MGI:71790 NCBI chrNW_004955557:1,355,471...1,515,725
Ensembl chrNW_004955557:1,355,397...1,515,393
JBrowse link
G Atxn2 ataxin 2 acts_upstream_of_or_within ISO (MGI:3510013|PMID:10973246) MGI PMID:10973246 MGI:3510013 NCBI chrNW_004955482:8,101,410...8,187,815
Ensembl chrNW_004955482:8,101,917...8,216,219
JBrowse link
G Cacna1a calcium voltage-gated channel subunit alpha1 A acts_upstream_of_or_within ISO (MGI:1347769|PMID:10630211)
(MGI:62667|PMID:1306163)
(MGI:68980|PMID:7834360)
MGI PMID:1306163 PMID:7834360 PMID:10630211 MGI:1347769 MGI:62667 MGI:68980 NCBI chrNW_004955415:32,182,536...32,457,511
Ensembl chrNW_004955415:32,183,442...32,400,595
JBrowse link
G Cend1 cell cycle exit and neuronal differentiation 1 acts_upstream_of_or_within ISO (MGI:4830814|PMID:20153830) MGI PMID:20153830 MGI:4830814 NCBI chrNW_004955476:11,339,586...11,341,996
Ensembl chrNW_004955476:11,339,586...11,341,996
JBrowse link
G Faim2 Fas apoptotic inhibitory molecule 2 involved_in ISO (MGI:5295128|PMID:21957071) UniProt PMID:21957071 MGI:5295128 NCBI chrNW_004955547:467,331...501,172
Ensembl chrNW_004955547:466,777...501,490
JBrowse link
G Foxp2 forkhead box P2 involved_in ISO (MGI:5306536|PMID:22133810) MGI PMID:22133810 MGI:5306536 NCBI chrNW_004955432:20,205,369...20,589,608
Ensembl chrNW_004955432:20,334,237...20,589,352
JBrowse link
G Herc1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 acts_upstream_of_or_within ISO (MGI:4461108|PMID:20041218) MGI PMID:20041218 MGI:4461108 NCBI chrNW_004955450:11,525,245...11,719,992
Ensembl chrNW_004955450:11,525,246...11,719,992
JBrowse link
G Ldb1 LIM domain binding 1 acts_upstream_of_or_within ISO (MGI:3718715|PMID:17664423) MGI PMID:17664423 MGI:3718715 NCBI chrNW_004955485:8,229,517...8,242,003
Ensembl chrNW_004955485:8,229,517...8,241,142
JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (MGI:3718715|PMID:17664423) MGI PMID:17664423 MGI:3718715 NCBI chrNW_004955451:1,037,936...1,048,501
Ensembl chrNW_004955451:1,037,825...1,048,501
JBrowse link
G Lhx5 LIM homeobox 5 acts_upstream_of_or_within ISO (MGI:3718715|PMID:17664423) MGI PMID:17664423 MGI:3718715 NCBI chrNW_004955482:9,682,671...9,691,155
Ensembl chrNW_004955482:9,682,526...9,691,530
JBrowse link
G Psap prosaposin acts_upstream_of_or_within ISO (MGI:3512714|PMID:15345707) MGI PMID:15345707 MGI:3512714 NCBI chrNW_004955437:19,667,252...19,683,669 JBrowse link
G Rora RAR related orphan receptor A acts_upstream_of_or_within ISO (MGI:86446|PMID:8996814) MGI PMID:8996814 MGI:86446 NCBI chrNW_004955450:14,262,199...14,434,611
Ensembl chrNW_004955450:14,262,190...14,425,233
JBrowse link
G Skor2 SKI family transcriptional corepressor 2 acts_upstream_of_or_within ISO (MGI:5300220|PMID:21937600)
(MGI:5565016|PMID:24491816)
MGI PMID:21937600 PMID:24491816 MGI:5300220 MGI:5565016 NCBI chrNW_004955402:32,577,189...32,618,611
Ensembl chrNW_004955402:32,582,575...32,618,436
JBrowse link
G Slc25a46 solute carrier family 25 member 46 acts_upstream_of_or_within ISO (MGI:5921109|PMID:28934388) MGI PMID:28934388 MGI:5921109 NCBI chrNW_004955418:4,316,790...4,342,748 JBrowse link
G Top2a DNA topoisomerase II alpha ISO RGD PMID:11170002 RGD:8693630 NCBI chrNW_004955451:14,928,273...14,964,855
Ensembl chrNW_004955451:14,929,136...14,964,723
JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B acts_upstream_of_or_within ISO (MGI:6152587|PMID:29615573) MGI PMID:29615573 MGI:6152587 NCBI chrNW_004955449:8,242,327...8,306,012
Ensembl chrNW_004955449:8,241,990...8,308,562
JBrowse link
G Ttll1 tubulin tyrosine ligase like 1 acts_upstream_of_or_within ISO (MGI:6269036|PMID:30420556) MGI PMID:30420556 MGI:6269036 NCBI chrNW_004955413:28,234,964...28,250,899
Ensembl chrNW_004955413:28,234,486...28,250,688
JBrowse link
cerebellar Purkinje cell layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gba glucosylceramidase beta acts_upstream_of_or_within ISO (MGI:3762988|PMID:17954912) MGI PMID:17954912 MGI:3762988 NCBI chrNW_004955545:1,682,097...1,689,373
Ensembl chrNW_004955545:1,682,097...1,689,376
JBrowse link
G Whrn whirlin involved_in ISO (MGI:5516521|PMID:24011083) CACAO PMID:24011083 MGI:5516521 NCBI chrNW_004955419:13,116,001...13,207,266
Ensembl chrNW_004955419:13,116,001...13,207,266
JBrowse link
cerebellar Purkinje cell layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (MGI:3709537|PMID:17409239) MGI PMID:17409239 MGI:3709537 NCBI chrNW_004955561:1,727,935...1,851,907
Ensembl chrNW_004955561:1,727,935...1,851,907
JBrowse link
G Cntnap2 contactin associated protein 2 involved_in ISO (MGI:6477849|PMID:32675284) MGI PMID:32675284 MGI:6477849 NCBI chrNW_004955491:1,983,002...3,982,510
Ensembl chrNW_004955491:1,984,050...3,981,830
JBrowse link
G Coq8b coenzyme Q8B involved_in ISO (PMID:27499294) UniProt PMID:27499294 NCBI chrNW_004955578:615,820...635,488
Ensembl chrNW_004955578:615,381...635,488
JBrowse link
G Sptbn2 spectrin beta, non-erythrocytic 2 acts_upstream_of_or_within ISO (MGI:4438955|PMID:20231455) MGI PMID:20231455 MGI:4438955 NCBI chrNW_004955422:18,659,489...18,699,338
Ensembl chrNW_004955422:18,659,489...18,699,338
JBrowse link
cerebellar Purkinje cell layer structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 involved_in ISO (MGI:5504540|PMID:23688253) UniProt PMID:23688253 MGI:5504540 NCBI chrNW_004955411:3,478,943...3,486,541
Ensembl chrNW_004955411:3,478,033...3,486,604
JBrowse link
G Kif14 kinesin family member 14 involved_in ISO (MGI:5485315|PMID:23308235) UniProt PMID:23308235 MGI:5485315 NCBI chrNW_004955406:36,732,135...36,791,756
Ensembl chrNW_004955406:36,737,484...36,791,756
JBrowse link
cerebellum formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt1 Wnt family member 1 involved_in ISO (MGI:1931348|PMID:2202907) BHF-UCL PMID:2202907 MGI:1931348 NCBI chrNW_004955500:7,797,063...7,811,142
Ensembl chrNW_004955500:7,797,060...7,811,167
JBrowse link
cerebellum morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (MGI:4840122|PMID:20980600) MGI PMID:20980600 MGI:4840122 NCBI chrNW_004955513:652,048...799,182
Ensembl chrNW_004955513:653,252...799,239
JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (MGI:4840122|PMID:20980600) MGI PMID:20980600 MGI:4840122 NCBI chrNW_004955406:18,435,984...18,527,967
Ensembl chrNW_004955406:18,437,672...18,527,698
JBrowse link
G Cbs cystathionine beta-synthase acts_upstream_of_or_within ISO (MGI:3607901|PMID:16160063) MGI PMID:16160063 MGI:3607901 NCBI chrNW_004955407:38,924,355...38,939,790 JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within ISO (MGI:2138056|PMID:11456442) MGI PMID:11456442 MGI:2138056 NCBI chrNW_004955432:727,784...729,096 JBrowse link
G Gnpat glyceronephosphate O-acyltransferase acts_upstream_of_or_within ISO (MGI:3843561|PMID:19270340) MGI PMID:19270340 MGI:3843561 NCBI chrNW_004955492:7,489,080...7,519,590
Ensembl chrNW_004955492:7,489,080...7,519,590
JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO (MGI:3695500|PMID:17166916) MGI PMID:17166916 MGI:3695500 NCBI chrNW_004955419:1,782,566...1,857,375
Ensembl chrNW_004955419:1,782,566...1,857,375
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:1891551|PMID:11029008) MGI PMID:11029008 MGI:1891551 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650
JBrowse link
G Skor2 SKI family transcriptional corepressor 2 acts_upstream_of_or_within ISO (MGI:5300220|PMID:21937600) MGI PMID:21937600 MGI:5300220 NCBI chrNW_004955402:32,577,189...32,618,611
Ensembl chrNW_004955402:32,582,575...32,618,436
JBrowse link
G Xrcc1 X-ray repair cross complementing 1 involved_in ISO (MGI:5902647|PMID:28002403) UniProt PMID:28002403 MGI:5902647 NCBI chrNW_004955555:1,293,416...1,315,839
Ensembl chrNW_004955555:1,293,416...1,315,839
JBrowse link
cerebellum structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dab1 DAB adaptor protein 1 acts_upstream_of_or_within ISO (MGI:1098179|PMID:9338785) MGI PMID:9338785 MGI:1098179 NCBI chrNW_004955464:2,325,529...2,721,497
Ensembl chrNW_004955464:2,455,346...2,724,358
JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 involved_in ISO (MGI:4437543|PMID:19816510) BHF-UCL PMID:19816510 MGI:4437543 NCBI chrNW_004955419:3,055,420...3,060,208
Ensembl chrNW_004955419:3,055,420...3,062,131
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12096
    developmental process 5735
      anatomical structure morphogenesis 2540
        hindbrain morphogenesis 62
          cerebellum morphogenesis + 58
          hindbrain formation + 1
          hindbrain structural organization + 2
          medulla oblongata morphogenesis + 0
          pons morphogenesis + 0
Path 2
Term Annotations click to browse term
  biological_process 12096
    developmental process 5735
      anatomical structure development 5360
        multicellular organism development 4908
          system development 4605
            nervous system development 2389
              central nervous system development 1153
                brain development 914
                  hindbrain development 213
                    hindbrain morphogenesis 62
                      cerebellum morphogenesis + 58
                      hindbrain formation + 1
                      hindbrain structural organization + 2
                      medulla oblongata morphogenesis + 0
                      pons morphogenesis + 0
paths to the root