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ONTOLOGY REPORT - ANNOTATIONS


Term:pons development
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Accession:GO:0021548 term browser browse the term
Definition:The process whose specific outcome is the progression of the pons over time, from its formation to the mature structure. The pons lies above the medulla and next to the cerebellum. The pons conveys information about movement from the cerebral hemisphere to the cerebellum.



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pons development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uqcrq ubiquinol-cytochrome c reductase, complex III subunit VII involved_in ISO (PMID:16901643) RGD PMID:16901643 NCBI chr10:38,086,691...38,093,871
Ensembl chr10:37,586,888...37,589,169
JBrowse link
abducens nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in IEA
ISO
GO_REF:0000107
MGI:3720850 (PMID:21533046)
Ensembl
RGD
PMID:21533046 GO_REF:0000107 NCBI chr 3:79,125,814...79,202,896
Ensembl chr 3:58,718,332...58,795,236
JBrowse link
cochlear nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857134 (PMID:11027399)
Ensembl
RGD
PMID:11027399 GO_REF:0000107 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743
JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO MGI:2139764 (PMID:20215345) RGD PMID:20215345 NCBI chr 7:109,640,034...109,663,354
Ensembl chr 7:107,759,343...107,782,331
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:2145950|MGI:4440621 (PMID:20215345) RGD PMID:20215345 NCBI chr 2:221,236,897...221,306,986
Ensembl chr 2:218,562,676...218,632,699
JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO MGI:2682641 (PMID:12808454) RGD PMID:12808454 NCBI chr15:13,015,854...13,095,485
Ensembl chr15:10,588,979...10,664,781
JBrowse link
facial nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in IEA
ISO
GO_REF:0000107
MGI:3720850 (PMID:21533046)
Ensembl
RGD
PMID:21533046 GO_REF:0000107 NCBI chr 3:79,125,814...79,202,896
Ensembl chr 3:58,718,332...58,795,236
JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO MGI:1857504 (PMID:8102800) RGD PMID:8102800 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:81,255,883...81,258,504
JBrowse link
G Hoxb1 homeo box B1 acts_upstream_of_or_within ISO MGI:1857824 (PMID:8898234) RGD PMID:8898234 NCBI chr10:81,827,915...81,830,404
Ensembl chr10:81,331,507...81,332,836
JBrowse link
locus ceruleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phox2a paired-like homeobox 2a involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2180328|MGI:4438118 (PMID:21068058), (PMID:9115735)
Ensembl
RGD
PMID:9115735 PMID:21068058 GO_REF:0000107 NCBI chr 1:165,590,757...165,595,122
Ensembl chr 1:156,178,754...156,183,118
JBrowse link
pons maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grin1 glutamate ionotropic receptor NMDA type subunit 1 acts_upstream_of_or_within ISO MGI:1928270 (PMID:8313466) RGD PMID:8313466 NCBI chr 3:28,501,836...28,528,754
Ensembl chr 3:8,103,680...8,130,603
JBrowse link
superior olivary nucleus maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5r1 cyclin-dependent kinase 5 regulatory subunit 1 acts_upstream_of_or_within ISO MGI:1330828 (PMID:11517264) RGD PMID:11517264 NCBI chr10:65,981,692...65,985,831
Ensembl chr10:65,483,941...65,488,456
JBrowse link
G Cdk5r2 cyclin-dependent kinase 5 regulatory subunit 2 acts_upstream_of_or_within ISO MGI:101764 (PMID:11517264) RGD PMID:11517264 NCBI chr 9:83,864,922...83,866,390
Ensembl chr 9:76,416,062...76,418,344
JBrowse link
vestibular nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:1857470 (PMID:12885554) RGD PMID:12885554 NCBI chr 7:23,790,642...23,793,509
Ensembl chr 7:21,903,126...21,905,993
JBrowse link
G Cacna1a calcium voltage-gated channel subunit alpha1 A acts_upstream_of_or_within ISO MGI:1856210 (PMID:8719615) RGD PMID:8719615 NCBI chr19:40,425,560...40,724,810
Ensembl chr19:23,520,741...23,823,225
JBrowse link
G Kcne1 potassium voltage-gated channel subfamily E regulatory subunit 1 involved_in ISO MGI:1857442 (PMID:11223304) RGD PMID:11223304 NCBI chr11:45,066,875...45,080,024
Ensembl chr11:31,580,742...31,593,901
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20553
    developmental process 7140
      anatomical structure development 6638
        pons development 15
          abducens nucleus development 1
          cochlear nucleus development + 4
          facial nucleus development 3
          locus ceruleus development + 1
          pons maturation + 3
          pons morphogenesis + 0
          salivary nucleus development + 0
          superior olivary nucleus development + 2
          trigeminal motor nucleus development 0
          vestibular nucleus development 3
Path 2
Term Annotations click to browse term
  biological_process 20553
    developmental process 7140
      anatomical structure development 6638
        multicellular organism development 5350
          system development 4630
            nervous system development 2867
              central nervous system development 1227
                brain development 905
                  hindbrain development 228
                    metencephalon development 174
                      pons development 15
                        abducens nucleus development 1
                        cochlear nucleus development + 4
                        facial nucleus development 3
                        locus ceruleus development + 1
                        pons maturation + 3
                        pons morphogenesis + 0
                        salivary nucleus development + 0
                        superior olivary nucleus development + 2
                        trigeminal motor nucleus development 0
                        vestibular nucleus development 3
paths to the root