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ONTOLOGY REPORT - ANNOTATIONS

Term:rhombomere development
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Accession:GO:0021546 term browser browse the term
Definition:The process whose specific outcome is the progression of the rhombomere over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates.


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rhombomere development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOXB1 homeobox B1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21320481) Ensembl
MGI		 PMID:21320481 GO_REF:0000107 NCBI chr17:9,005,745...9,008,230
Ensembl chr17:9,190,137...9,191,696 		JBrowse link
G HOXB3 homeobox B3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21320481) Ensembl
MGI		 PMID:21320481 GO_REF:0000107 NCBI chr17:8,946,441...8,987,876
Ensembl chr17:9,147,784...9,171,021 		JBrowse link
rhombomere 2 development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GBX2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO (PMID:16651541) MGI PMID:16651541 NCBI chr2B:123,392,499...123,399,549 JBrowse link
G HOXA2 homeobox A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7508007) Ensembl
MGI		 PMID:7508007 GO_REF:0000107 NCBI chr 7:27,745,138...27,747,129
Ensembl chr 7:27,344,469...27,346,789 		JBrowse link
rhombomere 3 development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EGR2 early growth response 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9806922) Ensembl
MGI		 PMID:9806922 GO_REF:0000107 NCBI chr10:59,320,073...59,326,869
Ensembl chr10:61,648,364...61,652,846 		JBrowse link
G HOXA1 homeobox A1 acts_upstream_of_or_within ISO (PMID:9806922) MGI PMID:9806922 NCBI chr 7:27,737,432...27,740,442
Ensembl chr 7:27,335,710...27,339,747 		JBrowse link
G HOXA2 homeobox A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7508007) Ensembl
MGI		 PMID:7508007 GO_REF:0000107 NCBI chr 7:27,745,138...27,747,129
Ensembl chr 7:27,344,469...27,346,789 		JBrowse link
G HOXB2 homeobox B2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10230789) Ensembl
MGI		 PMID:10230789 GO_REF:0000107 NCBI chr17:8,991,652...8,994,092
Ensembl chr17:9,176,313...9,178,713 		JBrowse link
rhombomere 3 formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EGR2 early growth response 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7903221) Ensembl
MGI		 PMID:7903221 GO_REF:0000107 NCBI chr10:59,320,073...59,326,869
Ensembl chr10:61,648,364...61,652,846 		JBrowse link
rhombomere 3 morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOXA2 homeobox A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10230789) Ensembl
MGI		 PMID:10230789 GO_REF:0000107 NCBI chr 7:27,745,138...27,747,129
Ensembl chr 7:27,344,469...27,346,789 		JBrowse link
rhombomere 3 structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EGR2 early growth response 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:59,320,073...59,326,869
Ensembl chr10:61,648,364...61,652,846 		JBrowse link
rhombomere 4 development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOXA1 homeobox A1 acts_upstream_of_or_within ISO (PMID:10529420)
(PMID:8102800), (PMID:9806922)		 MGI PMID:8102800 PMID:9806922 PMID:10529420 NCBI chr 7:27,737,432...27,740,442
Ensembl chr 7:27,335,710...27,339,747 		JBrowse link
G HOXB1 homeobox B1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10529420) Ensembl
MGI		 PMID:10529420 GO_REF:0000107 NCBI chr17:9,005,745...9,008,230
Ensembl chr17:9,190,137...9,191,696 		JBrowse link
G HOXB2 homeobox B2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10230789) Ensembl
MGI		 PMID:10230789 GO_REF:0000107 NCBI chr17:8,991,652...8,994,092
Ensembl chr17:9,176,313...9,178,713 		JBrowse link
rhombomere 5 development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOXA1 homeobox A1 acts_upstream_of_or_within ISO (PMID:10529420)
(PMID:8102800), (PMID:9806922)		 MGI PMID:8102800 PMID:9806922 PMID:10529420 NCBI chr 7:27,737,432...27,740,442
Ensembl chr 7:27,335,710...27,339,747 		JBrowse link
G HOXB1 homeobox B1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10529420) Ensembl
MGI		 PMID:10529420 GO_REF:0000107 NCBI chr17:9,005,745...9,008,230
Ensembl chr17:9,190,137...9,191,696 		JBrowse link
G MAFB MAF bZIP transcription factor B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7925021) Ensembl
MGI		 PMID:7925021 GO_REF:0000107 NCBI chr20:37,023,988...37,027,446
Ensembl chr20:38,127,722...38,128,693 		JBrowse link
rhombomere 5 formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EGR2 early growth response 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7903221) Ensembl
MGI		 PMID:7903221 GO_REF:0000107 NCBI chr10:59,320,073...59,326,869
Ensembl chr10:61,648,364...61,652,846 		JBrowse link
rhombomere 5 structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EGR2 early growth response 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:59,320,073...59,326,869
Ensembl chr10:61,648,364...61,652,846 		JBrowse link
rhombomere 6 development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAFB MAF bZIP transcription factor B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7925021) Ensembl
MGI		 PMID:7925021 GO_REF:0000107 NCBI chr20:37,023,988...37,027,446
Ensembl chr20:38,127,722...38,128,693 		JBrowse link
rhombomere morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAX6 paired box 6 ISO RGD PMID:21501682 RGD:8552349 NCBI chr11:31,753,190...31,782,225
Ensembl chr11:31,641,813...31,664,474 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16440
    developmental process 6563
      anatomical structure development 6172
        rhombomere development 9
          rhombomere 1 development + 0
          rhombomere 2 development + 2
          rhombomere 3 development + 4
          rhombomere 4 development + 3
          rhombomere 5 development + 4
          rhombomere 6 development + 1
          rhombomere 7 development + 0
          rhombomere 8 development + 0
          rhombomere cell differentiation 0
          rhombomere cell migration 0
          rhombomere cell proliferation 0
          rhombomere morphogenesis + 3
Path 2
Term Annotations click to browse term
  biological_process 16440
    developmental process 6563
      anatomical structure development 6172
        multicellular organism development 4975
          system development 4324
            nervous system development 2702
              central nervous system development 1165
                brain development 881
                  hindbrain development 223
                    rhombomere development 9
                      rhombomere 1 development + 0
                      rhombomere 2 development + 2
                      rhombomere 3 development + 4
                      rhombomere 4 development + 3
                      rhombomere 5 development + 4
                      rhombomere 6 development + 1
                      rhombomere 7 development + 0
                      rhombomere 8 development + 0
                      rhombomere cell differentiation 0
                      rhombomere cell migration 0
                      rhombomere cell proliferation 0
                      rhombomere morphogenesis + 3
paths to the root