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ONTOLOGY REPORT - ANNOTATIONS

Term:neural tube patterning
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Accession:GO:0021532 term browser browse the term
Definition:The regionalization process that regulates the coordinated growth that establishes the non-random spatial arrangement of the neural tube.


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neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARL13B ARF like GTPase 13B involved_in IEA
ISS 		Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:93,980,155...94,055,678
Ensembl chr 3:93,980,139...94,055,678 		JBrowse link
G DZIP1L DAZ interacting zinc finger protein 1 like acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:138,061,990...138,115,608
Ensembl chr 3:138,061,987...138,115,839 		JBrowse link
G IFT140 intraflagellar transport 140 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:1,510,427...1,612,072
Ensembl chr16:1,510,427...1,612,075 		JBrowse link
G PTCH1 patched 1 involved_in IMP (PMID:8681379) BHF-UCL PMID:8681379 NCBI chr 9:95,442,980...95,516,971
Ensembl chr 9:95,442,980...95,517,057 		JBrowse link
G RPGRIP1L RPGRIP1 like acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:53,598,153...53,703,859
Ensembl chr16:53,598,153...53,703,938 		JBrowse link
G TBC1D32 TBC1 domain family member 32 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:121,079,494...121,334,729
Ensembl chr 6:121,079,494...121,334,745 		JBrowse link
G TMEM107 transmembrane protein 107 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:8,172,457...8,176,380
Ensembl chr17:8,172,457...8,176,405 		JBrowse link
G TRAF3IP1 TRAF3 interacting protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:238,320,518...238,400,900
Ensembl chr 2:238,320,441...238,402,114 		JBrowse link
dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:53,949,736...53,956,891
Ensembl chr14:53,949,736...53,958,761 		JBrowse link
G CDK20 cyclin dependent kinase 20 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:87,966,441...87,974,533
Ensembl chr 9:87,964,906...87,974,764 		JBrowse link
G CPLANE2 ciliogenesis and planar polarity effector complex subunit 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:16,231,692...16,237,183
Ensembl chr 1:16,231,692...16,237,183 		JBrowse link
G FKBP8 FKBP prolyl isomerase 8 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr19:18,531,763...18,543,573
Ensembl chr19:18,531,751...18,544,264 		JBrowse link
G FOXA1 forkhead box A1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:37,589,552...37,595,249
Ensembl chr14:37,589,552...37,596,059 		JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:23383217)
(PMID:18590716)
(PMID:9226455) 		MGI PMID:9226455 PMID:18590716 PMID:23383217 NCBI chr20:22,580,998...22,585,490
Ensembl chr20:22,580,998...22,585,455 		JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17504941)
(PMID:17504940), (PMID:17504941) 		MGI PMID:17504940 PMID:17504941 NCBI chr 9:86,944,362...86,947,506
Ensembl chr 9:86,944,362...86,947,506 		JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:120,735,868...120,992,653
Ensembl chr 2:120,735,623...120,992,653 		JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:41,960,949...42,264,268
Ensembl chr 7:41,960,949...42,264,265 		JBrowse link
G GORAB golgin, RAB6 interacting acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:170,532,166...170,553,834
Ensembl chr 1:170,531,819...170,553,834 		JBrowse link
G GSC goosecoid homeobox acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:94,768,223...94,770,113
Ensembl chr14:94,768,223...94,770,113 		JBrowse link
G KIF3A kinesin family member 3A acts_upstream_of_or_within
involved_in 		ISO (PMID:18590716)
(PMID:21209331)
(PMID:18590716), (PMID:19286674) 		MGI
BHF-UCL		 PMID:18590716 PMID:19286674 PMID:21209331 NCBI chr 5:132,688,812...132,737,546
Ensembl chr 5:132,692,628...132,737,638 		JBrowse link
G MKS1 MKS transition zone complex subunit 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:58,205,441...58,219,255
Ensembl chr17:58,205,350...58,219,605 		JBrowse link
G MNX1 motor neuron and pancreas homeobox 1 acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chr 7:157,004,854...157,010,663
Ensembl chr 7:156,994,051...157,010,663 		JBrowse link
G PAX7 paired box 7 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:18,630,846...18,748,866
Ensembl chr 1:18,630,846...18,748,876 		JBrowse link
G PRKACA protein kinase cAMP-activated catalytic subunit alpha acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr19:14,091,688...14,117,762
Ensembl chr19:14,091,688...14,118,084 		JBrowse link
G PRKACB protein kinase cAMP-activated catalytic subunit beta acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:84,078,079...84,238,498
Ensembl chr 1:84,078,062...84,238,498 		JBrowse link
G PSEN1 presenilin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:73,136,417...73,223,691
Ensembl chr14:73,136,418...73,223,691 		JBrowse link
G PSEN2 presenilin 2 acts_upstream_of_or_within ISO (PMID:10557208) MGI PMID:10557208 NCBI chr 1:226,870,616...226,903,668
Ensembl chr 1:226,870,184...226,927,726 		JBrowse link
G PTCH1 patched 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:95,442,980...95,516,971
Ensembl chr 9:95,442,980...95,517,057 		JBrowse link
G RAB23 RAB23, member RAS oncogene family involved_in ISO (PMID:7720556) UniProt PMID:7720556 NCBI chr 6:57,186,992...57,222,307
Ensembl chr 6:57,186,992...57,222,848 		JBrowse link
G RNF220 ring finger protein 220 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:44,404,783...44,651,724
Ensembl chr 1:44,405,185...44,651,724 		JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in 		IEA
ISO 		(PMID:21209331) Ensembl
BHF-UCL		 PMID:21209331 GO_REF:0000107 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463 		JBrowse link
G SMO smoothened, frizzled class receptor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:129,188,633...129,213,545
Ensembl chr 7:129,188,511...129,213,546 		JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:102,502,819...102,633,535
Ensembl chr10:102,503,952...102,633,535 		JBrowse link
G TBC1D32 TBC1 domain family member 32 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:121,079,494...121,334,729
Ensembl chr 6:121,079,494...121,334,745 		JBrowse link
G TCTN1 tectonic family member 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:110,614,129...110,649,430
Ensembl chr12:110,614,027...110,663,431 		JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:123,584,552...123,598,582
Ensembl chr12:123,584,526...123,598,582 		JBrowse link
G TRAF3IP1 TRAF3 interacting protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:238,320,518...238,400,900
Ensembl chr 2:238,320,441...238,402,114 		JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:2,890,891...2,941,138
Ensembl chr12:2,877,223...2,941,138 		JBrowse link
G WDR19 WD repeat domain 19 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:39,182,529...39,285,810
Ensembl chr 4:39,182,494...39,285,810 		JBrowse link
G WNT3A Wnt family member 3A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:228,006,998...228,061,271
Ensembl chr 1:228,006,924...228,061,271 		JBrowse link
forebrain-midbrain boundary formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAX6 paired box 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:31,789,026...31,817,961
Ensembl chr11:31,784,779...31,817,961 		JBrowse link
midbrain-hindbrain boundary development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EN1 engrailed homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:118,842,171...118,847,648
Ensembl chr 2:118,842,171...118,847,648 		JBrowse link
G FGF8 fibroblast growth factor 8 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:101,770,109...101,780,369
Ensembl chr10:101,770,109...101,780,371 		JBrowse link
G GBX2 gastrulation brain homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:236,161,340...236,168,386
Ensembl chr 2:236,165,236...236,168,386 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:11029008), (PMID:19795512) MGI PMID:11029008 PMID:19795512 NCBI chr12:12,116,025...12,267,044
Ensembl chr12:12,116,025...12,267,185 		JBrowse link
G WNT1 Wnt family member 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:48,978,322...48,982,620
Ensembl chr12:48,978,322...48,982,620 		JBrowse link
midbrain-hindbrain boundary initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SSBP3 single stranded DNA binding protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:54,225,432...54,413,490
Ensembl chr 1:54,225,432...54,413,479 		JBrowse link
midbrain-hindbrain boundary maturation during brain development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WNT1 Wnt family member 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:48,978,322...48,982,620
Ensembl chr12:48,978,322...48,982,620 		JBrowse link
midbrain-hindbrain boundary morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GBX2 gastrulation brain homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:236,161,340...236,168,386
Ensembl chr 2:236,165,236...236,168,386 		JBrowse link
G HES1 hes family bHLH transcription factor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:194,136,148...194,138,732
Ensembl chr 3:194,136,142...194,138,732 		JBrowse link
G HES3 hes family bHLH transcription factor 3 acts_upstream_of_or_within ISO (PMID:11522634) MGI PMID:11522634 NCBI chr 1:6,244,179...6,245,578
Ensembl chr 1:6,244,179...6,245,578 		JBrowse link
G KDM2B lysine demethylase 2B involved_in IEA
ISS 		Ensembl
BHF-UCL		 GO_REF:0000024 GO_REF:0000107 NCBI chr12:121,408,461...121,582,279
Ensembl chr12:121,429,096...121,582,279 		JBrowse link
negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GPR161 G protein-coupled receptor 161 involved_in ISS UniProt GO_REF:0000024 NCBI chr 1:168,079,542...168,137,667
Ensembl chr 1:168,079,542...168,137,685 		JBrowse link
rostrocaudal neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP6AP2 ATPase H+ transporting accessory protein 2 involved_in IMP (PMID:20093472) UniProt PMID:20093472 NCBI chr  X:40,580,970...40,606,848
Ensembl chr  X:40,579,372...40,606,848 		JBrowse link
G BMI1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:22,321,099...22,331,706
Ensembl chr10:22,321,078...22,331,485 		JBrowse link
G COMMD3-BMI1 COMMD3-BMI1 readthrough acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:22,316,388...22,331,484
Ensembl chr10:22,316,388...22,329,542 		JBrowse link
G SOX17 SRY-box transcription factor 17 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:54,457,935...54,460,892
Ensembl chr 8:54,457,935...54,460,892 		JBrowse link
smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:120,735,868...120,992,653
Ensembl chr 2:120,735,623...120,992,653 		JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:41,960,949...42,264,268
Ensembl chr 7:41,960,949...42,264,265 		JBrowse link
G TBC1D32 TBC1 domain family member 32 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:121,079,494...121,334,729
Ensembl chr 6:121,079,494...121,334,745 		JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:2,890,891...2,941,138
Ensembl chr12:2,877,223...2,941,138 		JBrowse link
G WDR19 WD repeat domain 19 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:39,182,529...39,285,810
Ensembl chr 4:39,182,494...39,285,810 		JBrowse link
zona limitans intrathalamica formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHH sonic hedgehog signaling molecule ISO RGD PMID:25281935 RGD:12832757 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 30912
    multicellular organismal process 9203
      pattern specification process 534
        regionalization 482
          neural tube patterning 52
            dorsal/ventral neural tube patterning + 33
            rostrocaudal neural tube patterning + 15
Path 2
Term Annotations click to browse term
  biological_process 30912
    developmental process 7867
      anatomical structure development 7238
        multicellular organism development 5756
          embryo development 1411
            embryo development ending in birth or egg hatching 915
              chordate embryonic development 894
                neural tube development 201
                  neural tube patterning 52
                    dorsal/ventral neural tube patterning + 33
                    rostrocaudal neural tube patterning + 15
paths to the root