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ONTOLOGY REPORT - ANNOTATIONS

Term:neural tube patterning
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Accession:GO:0021532 term browser browse the term
Definition:The regionalization process that regulates the coordinated growth that establishes the non-random spatial arrangement of the neural tube.


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neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARL13B ARF like GTPase 13B involved_in ISO (PMID:23014696) UniProt PMID:23014696 NCBI chr 3:91,044,332...91,121,686
Ensembl chr 3:97,725,136...97,799,932 		JBrowse link
G DZIP1L DAZ interacting zinc finger protein 1 like acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:135,089,250...135,143,117
Ensembl chr 3:142,541,624...142,582,817 		JBrowse link
G IFT140 intraflagellar transport 140 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:130,150...232,369
Ensembl chr16:1,566,824...1,658,884 		JBrowse link
G PTCH1 patched 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:66,542,675...66,616,820
Ensembl chr 9:94,668,365...94,741,453 		JBrowse link
G RPGRIP1L RPGRIP1 like acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:33,836,361...33,939,265
Ensembl chr16:52,920,796...53,023,174 		JBrowse link
G TBC1D32 TBC1 domain family member 32 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:118,884,928...119,139,138
Ensembl chr 6:123,022,008...123,273,810 		JBrowse link
G TMEM107 transmembrane protein 107 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:43,481,043...43,485,189
Ensembl chr17:48,214,392...48,217,773 		JBrowse link
G TRAF3IP1 TRAF3 interacting protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr2B:125,558,537...125,637,733
Ensembl chr2B:244,405,992...244,481,785 		JBrowse link
dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752 		JBrowse link
G CPLANE2 ciliogenesis and planar polarity effector complex subunit 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:15,368,318...15,373,815
Ensembl chr 1:16,362,655...16,368,063 		JBrowse link
G FKBP8 FKBP prolyl isomerase 8 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr19:18,009,505...18,021,772
Ensembl chr19:18,980,269...18,992,170 		JBrowse link
G FOXA1 forkhead box A1 acts_upstream_of_or_within ISO (PMID:23383217) MGI PMID:23383217 NCBI chr14:18,347,284...18,352,705 JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:9226455)
(PMID:23383217)
(PMID:18590716) 		MGI PMID:9226455 PMID:18590716 PMID:23383217 NCBI chr20:22,519,942...22,524,262 JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17504940), (PMID:17504941)
(PMID:17504941) 		MGI PMID:17504940 PMID:17504941 NCBI chr 9:58,079,700...58,082,849
Ensembl chr 9:86,139,009...86,140,045 		JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr2B:7,665,403...7,922,840
Ensembl chr2B:121,303,831...121,497,442 		JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865 		JBrowse link
G GORAB golgin, RAB6 interacting acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:146,020,446...146,042,334
Ensembl chr 1:149,736,641...149,758,010 		JBrowse link
G GSC goosecoid homeobox acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:75,390,119...75,392,050
Ensembl chr14:94,718,269...94,720,404 		JBrowse link
G KIF3A kinesin family member 3A acts_upstream_of_or_within
involved_in 		ISO (PMID:18590716), (PMID:19286674)
(PMID:21209331) 		MGI
BHF-UCL		 PMID:18590716 PMID:19286674 PMID:21209331 NCBI chr 5:128,112,636...128,154,443
Ensembl chr 5:134,274,352...134,315,431 		JBrowse link
G MKS1 MKS transition zone complex subunit 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:52,281,443...52,295,919
Ensembl chr17:57,137,254...57,151,328 		JBrowse link
G MNX1 motor neuron and pancreas homeobox 1 acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chr 7:148,622,701...148,628,532 JBrowse link
G PAX7 paired box 7 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:17,589,513...17,707,442
Ensembl chr 1:18,639,641...18,756,952 		JBrowse link
G PRKACA protein kinase cAMP-activated catalytic subunit alpha acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr19:13,657,344...13,683,864
Ensembl chr19:14,385,191...14,406,205 		JBrowse link
G PRKACB protein kinase cAMP-activated catalytic subunit beta acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:116,625,640...116,786,396
Ensembl chr 1:85,487,681...85,644,253 		JBrowse link
G PSEN1 presenilin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:53,718,299...53,802,684
Ensembl chr14:72,579,024...72,663,876 		JBrowse link
G PSEN2 presenilin 2 acts_upstream_of_or_within ISO (PMID:10557208) MGI PMID:10557208 NCBI chr 1:202,328,987...202,354,440
Ensembl chr 1:207,320,937...207,346,295 		JBrowse link
G PTCH1 patched 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:66,542,675...66,616,820
Ensembl chr 9:94,668,365...94,741,453 		JBrowse link
G RAB23 RAB23, member RAS oncogene family involved_in ISO (PMID:7720556) UniProt PMID:7720556 NCBI chr 6:56,744,948...56,780,187
Ensembl chr 6:58,375,559...58,411,107 		JBrowse link
G RNF220 ring finger protein 220 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:43,707,764...43,954,197
Ensembl chr 1:45,083,499...45,319,721 		JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in 		IEA
ISO 		(PMID:21209331) Ensembl
BHF-UCL		 PMID:21209331 GO_REF:0000107 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651 		JBrowse link
G SMO smoothened, frizzled class receptor acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chr 7:121,143,968...121,168,873
Ensembl chr 7:133,668,304...133,693,048 		JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:99,107,516...99,231,761
Ensembl chr10:102,571,886...102,696,472 		JBrowse link
G TBC1D32 TBC1 domain family member 32 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:118,884,928...119,139,138
Ensembl chr 6:123,022,008...123,273,810 		JBrowse link
G TCTN1 tectonic family member 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:108,182,496...108,232,202
Ensembl chr12:111,577,755...111,610,754 		JBrowse link
G TRAF3IP1 TRAF3 interacting protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr2B:125,558,537...125,637,733
Ensembl chr2B:244,405,992...244,481,785 		JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:3,012,890...3,061,831
Ensembl chr12:2,944,769...2,993,278 		JBrowse link
G WDR19 WD repeat domain 19 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:33,511,283...33,616,946
Ensembl chr 4:39,365,276...39,462,903 		JBrowse link
G WNT3A Wnt family member 3A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:203,409,294...203,463,214
Ensembl chr 1:208,628,706...208,674,469 		JBrowse link
forebrain-midbrain boundary formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAX6 paired box 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:31,753,190...31,782,225
Ensembl chr11:31,641,813...31,664,474 		JBrowse link
midbrain-hindbrain boundary development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EN1 engrailed homeobox 1 acts_upstream_of_or_within ISO (PMID:15607945) MGI PMID:15607945 NCBI chr2B:5,798,557...5,804,368 JBrowse link
G FGF8 fibroblast growth factor 8 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:98,372,251...98,378,811
Ensembl chr10:101,844,792...101,853,916 		JBrowse link
G GBX2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO (PMID:16651541) MGI PMID:16651541 NCBI chr2B:123,392,499...123,399,549 JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:11029008), (PMID:19795512) MGI PMID:11029008 PMID:19795512 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973 		JBrowse link
G WNT1 Wnt family member 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:39,767,839...39,772,460
Ensembl chr12:40,648,413...40,652,583 		JBrowse link
midbrain-hindbrain boundary initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SSBP3 single stranded DNA binding protein 3 involved_in ISO (PMID:15857913) UniProt PMID:15857913 NCBI chr 1:53,501,656...53,680,682
Ensembl chr 1:55,094,820...55,272,207 		JBrowse link
midbrain-hindbrain boundary maturation during brain development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WNT1 Wnt family member 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:39,767,839...39,772,460
Ensembl chr12:40,648,413...40,652,583 		JBrowse link
midbrain-hindbrain boundary morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GBX2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO (PMID:16651541) MGI PMID:16651541 NCBI chr2B:123,392,499...123,399,549 JBrowse link
G HES1 hes family bHLH transcription factor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:191,432,513...191,435,387
Ensembl chr 3:201,749,044...201,754,257 		JBrowse link
G HES3 hes family bHLH transcription factor 3 acts_upstream_of_or_within ISO (PMID:11522634) MGI PMID:11522634 NCBI chr 1:5,008,155...5,012,868
Ensembl chr 1:6,265,738...6,266,937 		JBrowse link
G KDM2B lysine demethylase 2B involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:119,027,633...119,183,779
Ensembl chr12:122,401,296...122,555,246 		JBrowse link
negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GPR161 G protein-coupled receptor 161 involved_in ISO (PMID:23332756) UniProt PMID:23332756 NCBI chr 1:143,566,775...143,625,357
Ensembl chr 1:147,299,350...147,350,451 		JBrowse link
rostrocaudal neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP6AP2 ATPase H+ transporting accessory protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:33,026,525...33,052,252
Ensembl chr  X:40,730,677...40,756,209 		JBrowse link
G BMI1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:22,477,755...22,487,894
Ensembl chr10:22,857,776...22,863,479 		JBrowse link
G SOX17 SRY-box transcription factor 17 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:50,883,088...50,885,542
Ensembl chr 8:48,257,287...48,259,808 		JBrowse link
smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr2B:7,665,403...7,922,840
Ensembl chr2B:121,303,831...121,497,442 		JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865 		JBrowse link
G TBC1D32 TBC1 domain family member 32 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:118,884,928...119,139,138
Ensembl chr 6:123,022,008...123,273,810 		JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:3,012,890...3,061,831
Ensembl chr12:2,944,769...2,993,278 		JBrowse link
G WDR19 WD repeat domain 19 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:33,511,283...33,616,946
Ensembl chr 4:39,365,276...39,462,903 		JBrowse link
zona limitans intrathalamica formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHH sonic hedgehog signaling molecule ISO RGD PMID:25281935 RGD:12832757 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19472
    multicellular organismal process 7486
      pattern specification process 483
        regionalization 443
          neural tube patterning 49
            dorsal/ventral neural tube patterning + 31
            rostrocaudal neural tube patterning + 14
Path 2
Term Annotations click to browse term
  biological_process 19472
    developmental process 6808
      anatomical structure development 6362
        multicellular organism development 5090
          embryo development 1318
            embryo development ending in birth or egg hatching 878
              chordate embryonic development 862
                neural tube development 195
                  neural tube patterning 49
                    dorsal/ventral neural tube patterning + 31
                    rostrocaudal neural tube patterning + 14
paths to the root