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ONTOLOGY REPORT - ANNOTATIONS


Term:cell differentiation in spinal cord
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Accession:GO:0021515 term browser browse the term
Definition:The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the cells of the spinal cord. Differentiation includes the processes involved in commitment of a cell to a specific fate.


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cell differentiation in spinal cord term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbx1 developing brain homeobox 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:104,969,218...104,973,648
Ensembl chr 1:104,969,218...104,973,648
JBrowse link
G Notch1 notch receptor 1 IEP RGD PMID:20195794 RGD:2325285 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
commissural neuron differentiation in spinal cord term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Draxin dorsal inhibitory axon guidance protein ISO
IBA
(MGI:MGI:3832346|PMID:19150847)
PMID:21873635
RGD PMID:19150847, PMID:21873635 MGI:MGI:3832346, RGD:13792537 NCBI chr 5:164,913,085...164,943,012
Ensembl chr 5:164,913,906...164,927,869
JBrowse link
medial motor column neuron differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx3 LIM homeobox 3 ISO MGI:MGI:101776 (MGI:MGI:1316601|PMID:9865699) RGD PMID:9865699 MGI:MGI:1316601 NCBI chr 3:3,653,861...3,662,509
Ensembl chr 3:3,654,755...3,661,810
JBrowse link
G Lhx4 LIM homeobox 4 ISO MGI:MGI:102673 (MGI:MGI:1316601|PMID:9865699) RGD PMID:9865699 MGI:MGI:1316601 NCBI chr13:73,348,874...73,400,416
Ensembl chr13:73,348,842...73,400,416
JBrowse link
regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax6 paired box 6 ISO
IEA
MGI:MGI:1856155 (MGI:MGI:894150|PMID:9230312)
GO_REF:0000107
RGD
Ensembl
PMID:9230312 GO_REF:0000107, MGI:MGI:894150 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
regulation of transcription from RNA polymerase II promoter involved in spinal cord association neuron specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lbx1 ladybird homeobox 1 ISO MGI:MGI:2182635 (MGI:MGI:2179903|PMID:12062038) RGD PMID:12062038 MGI:MGI:2179903 NCBI chr 1:264,973,315...264,975,132
Ensembl chr 1:264,973,315...264,975,132
JBrowse link
regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx6-1 NK6 homeobox 1 ISO MGI:MGI:1352738 (MGI:MGI:2150481|PMID:11567614) RGD PMID:11567614 MGI:MGI:2150481 NCBI chr14:9,555,264...9,562,197
Ensembl chr14:9,555,264...9,562,189
JBrowse link
G Nkx6-2 NK6 homeobox 2 ISO MGI:MGI:1206039 (MGI:MGI:2150481|PMID:11567614) RGD PMID:11567614 MGI:MGI:2150481 NCBI chr 1:211,922,389...211,923,929
Ensembl chr 1:211,922,389...211,923,929
JBrowse link
G Pax6 paired box 6 ISO
IEA
MGI:MGI:1856155 (MGI:MGI:894150|PMID:9230312)
GO_REF:0000107
RGD
Ensembl
PMID:9230312 GO_REF:0000107, MGI:MGI:894150 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Evx1 even-skipped homeobox 1 ISO MGI:MGI:2182858 (MGI:MGI:2136555|PMID:11239430) RGD PMID:11239430 MGI:MGI:2136555 NCBI chr 4:82,370,829...82,374,313
Ensembl chr 4:82,370,997...82,375,374
JBrowse link
G Nkx6-1 NK6 homeobox 1 ISO MGI:MGI:2386119 (MGI:MGI:2150481|PMID:11567614) RGD PMID:11567614 MGI:MGI:2150481 NCBI chr14:9,555,264...9,562,197
Ensembl chr14:9,555,264...9,562,189
JBrowse link
G Nkx6-2 NK6 homeobox 2 ISO MGI:MGI:2651850 (MGI:MGI:2150481|PMID:11567614) RGD PMID:11567614 MGI:MGI:2150481 NCBI chr 1:211,922,389...211,923,929
Ensembl chr 1:211,922,389...211,923,929
JBrowse link
G Pax6 paired box 6 ISO
IEA
MGI:MGI:1856155 (MGI:MGI:894150|PMID:9230312)
GO_REF:0000107
RGD
Ensembl
PMID:9230312 GO_REF:0000107, MGI:MGI:894150 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 ISO MGI:MGI:95729 (MGI:MGI:3051712|PMID:15215207) RGD PMID:15215207 MGI:MGI:3051712 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:MGI:95728 (MGI:MGI:3051712|PMID:15215207) RGD PMID:15215207 MGI:MGI:3051712 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling ISO MGI:MGI:4840420 (MGI:MGI:4355593|PMID:19684112) RGD PMID:19684112 MGI:MGI:4355593 NCBI chr 1:266,143,766...266,241,742
Ensembl chr 1:266,143,818...266,239,016
JBrowse link
smoothened signaling pathway involved in ventral spinal cord interneuron specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 ISO MGI:MGI:95729 (MGI:MGI:3051712|PMID:15215207) RGD PMID:15215207 MGI:MGI:3051712 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:MGI:95728 (MGI:MGI:3051712|PMID:15215207) RGD PMID:15215207 MGI:MGI:3051712 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling ISO MGI:MGI:4840420 (MGI:MGI:4355593|PMID:19684112) RGD PMID:19684112 MGI:MGI:4355593 NCBI chr 1:266,143,766...266,241,742
Ensembl chr 1:266,143,818...266,239,016
JBrowse link
somatic motor neuron differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln8 CLN8, transmembrane ER and ERGIC protein ISO (MGI:MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:MGI:4849309 NCBI chr16:79,828,321...79,838,212
Ensembl chr16:79,828,324...79,838,212
JBrowse link
G Phox2a paired-like homeobox 2a ISO
IEA
MGI:MGI:3521825 (MGI:MGI:3761765|PMID:16319924)
GO_REF:0000107
RGD
Ensembl
PMID:16319924 GO_REF:0000107, MGI:MGI:3761765 NCBI chr 1:166,893,734...166,898,252
Ensembl chr 1:166,893,734...166,898,252
JBrowse link
G Tctn1 tectonic family member 1 ISO MGI:MGI:3716885 (MGI:MGI:3610767|PMID:16357211) RGD PMID:16357211 MGI:MGI:3610767 NCBI chr12:39,790,948...39,828,215
Ensembl chr12:39,790,965...39,824,064
JBrowse link
spinal cord association neuron differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 ISO MGI:MGI:1857470 (MGI:MGI:3639800|PMID:16715081) RGD PMID:16715081 MGI:MGI:3639800 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
G Gdf7 growth differentiation factor 7 ISO MGI:MGI:2386906 (MGI:MGI:1353705|PMID:10693795) RGD PMID:10693795 MGI:MGI:1353705 NCBI chr 6:33,496,596...33,507,626
Ensembl chr 6:33,503,217...33,507,542
JBrowse link
G Gsx1 GS homeobox 1 ISO MGI:MGI:95843 (MGI:MGI:3639800|PMID:16715081) RGD PMID:16715081 MGI:MGI:3639800 NCBI chr12:9,605,873...9,607,168
Ensembl chr12:9,605,873...9,607,168
JBrowse link
G Gsx2 GS homeobox 2 ISO MGI:MGI:95842 (MGI:MGI:3639800|PMID:16715081) RGD PMID:16715081 MGI:MGI:3639800 NCBI chr14:35,650,985...35,652,709
Ensembl chr14:35,650,985...35,652,709
JBrowse link
G Lhx1 LIM homeobox 1 ISO
ISS
UniProtKB:P61375 (MGI:MGI:3695495|PMID:17166926)
GO_REF:0000024
RGD
UniProt
PMID:17166926 GO_REF:0000024, MGI:MGI:3695495 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Lhx3 LIM homeobox 3 ISO (MGI:MGI:3840011|PMID:19323994) RGD PMID:19323994 MGI:MGI:3840011 NCBI chr 3:3,653,861...3,662,509
Ensembl chr 3:3,654,755...3,661,810
JBrowse link
G Lhx5 LIM homeobox 5 ISO UniProtKB:P63006 (MGI:MGI:3695495|PMID:17166926) RGD PMID:17166926 MGI:MGI:3695495 NCBI chr12:41,663,000...41,671,437
Ensembl chr12:41,663,000...41,671,437
JBrowse link
G Lmo4 LIM domain only 4 ISO MGI:MGI:98480 (MGI:MGI:3840011|PMID:19323994) RGD PMID:19323994 MGI:MGI:3840011 NCBI chr 2:250,218,635...250,235,435
Ensembl chr 2:250,218,641...250,241,673
JBrowse link
G Mdga1 MAM domain containing glycosylphosphatidylinositol anchor 1 IEP PMID:15019943 HGNC PMID:15019943 RGD:8554528 NCBI chr20:8,515,142...8,574,632
Ensembl chr20:8,515,142...8,574,082
JBrowse link
G Pax3 paired box 3 ISO MGI:MGI:97491 (MGI:MGI:1321412|PMID:9858722) RGD PMID:9858722 MGI:MGI:1321412 NCBI chr 9:84,004,004...84,101,226
Ensembl chr 9:84,005,183...84,101,172
JBrowse link
G Pax7 paired box 7 ISO MGI:MGI:97487 (MGI:MGI:1321412|PMID:9858722) RGD PMID:9858722 MGI:MGI:1321412 NCBI chr 5:158,211,001...158,313,510
Ensembl chr 5:158,214,616...158,313,426
JBrowse link
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor ISO MGI:MGI:109360 (MGI:MGI:3840011|PMID:19323994) RGD PMID:19323994 MGI:MGI:3840011 NCBI chr 5:133,864,401...133,878,604
Ensembl chr 5:133,864,798...133,878,830
JBrowse link
G Wnt1 Wnt family member 1 ISO MGI:MGI:98956 (MGI:MGI:2176385|PMID:11877374) RGD PMID:11877374 MGI:MGI:2176385 NCBI chr 7:140,464,999...140,469,046
Ensembl chr 7:140,464,999...140,469,046
JBrowse link
G Wnt3a Wnt family member 3A ISO MGI:MGI:98953 (MGI:MGI:2176385|PMID:11877374) RGD PMID:11877374 MGI:MGI:2176385 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link
spinal cord motor neuron cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxc10 homeo box C10 ISO MGI:MGI:96202 (MGI:MGI:3771768|PMID:18065432) RGD PMID:18065432 MGI:MGI:3771768 NCBI chr 7:144,577,578...144,582,802
Ensembl chr 7:144,577,465...144,582,622
JBrowse link
G Hoxd10 homeo box D10 ISO MGI:MGI:96192 (MGI:MGI:3771768|PMID:18065432) RGD PMID:18065432 MGI:MGI:3771768 NCBI chr 3:61,614,133...61,617,342
Ensembl chr 3:61,613,774...61,617,367
JBrowse link
G Isl1 ISL LIM homeobox 1 ISO MGI:MGI:102673 (MGI:MGI:4356383|PMID:19666821) RGD PMID:19666821 MGI:MGI:4356383 NCBI chr 2:48,488,911...48,501,217
Ensembl chr 2:48,487,736...48,501,436
JBrowse link
G Isl2 ISL LIM homeobox 2 ISO
IEA
MGI:MGI:102673 (MGI:MGI:4356383|PMID:19666821)
GO_REF:0000107
RGD
Ensembl
PMID:19666821 GO_REF:0000107, MGI:MGI:4356383 NCBI chr 8:60,117,565...60,122,716
Ensembl chr 8:60,117,729...60,122,211
JBrowse link
G Lhx3 LIM homeobox 3 ISO MGI:MGI:101791|MGI:MGI:109156 (MGI:MGI:4356383|PMID:19666821) RGD PMID:19666821 MGI:MGI:4356383 NCBI chr 3:3,653,861...3,662,509
Ensembl chr 3:3,654,755...3,661,810
JBrowse link
G Mnx1 motor neuron and pancreas homeobox 1 ISO
IBA
MGI:MGI:2182358|MGI:MGI:2182361|MGI:MGI:2182363 (MGI:MGI:1344237|PMID:10482234)
PMID:21873635
RGD PMID:10482234, PMID:21873635 MGI:MGI:1344237, RGD:13792537 NCBI chr 4:2,376,350...2,381,308
Ensembl chr 4:2,376,958...2,381,271
JBrowse link
G Olig3 oligodendrocyte transcription factor 3 ISO MGI:MGI:3573868 (MGI:MGI:3531376|PMID:15769945) RGD PMID:15769945 MGI:MGI:3531376 NCBI chr 1:14,797,766...14,799,835
Ensembl chr 1:14,797,766...14,799,835
JBrowse link
spinal cord motor neuron differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 ISO MGI:MGI:99954 (MGI:MGI:3845694|PMID:19299493) RGD PMID:19299493 MGI:MGI:3845694 NCBI chr17:43,946,118...43,948,224
Ensembl chr17:43,946,130...43,948,223
JBrowse link
G Cacna1a calcium voltage-gated channel subunit alpha1 A ISO
IEA
MGI:MGI:1856209|MGI:MGI:1856211 (MGI:MGI:3794823|PMID:17156092)
GO_REF:0000107
RGD
Ensembl
PMID:17156092 GO_REF:0000107, MGI:MGI:3794823 NCBI chr19:25,453,236...25,749,550
Ensembl chr19:25,526,751...25,749,550
JBrowse link
G Cln8 CLN8, transmembrane ER and ERGIC protein ISO MGI:MGI:1856959 (MGI:MGI:3709684|PMID:2061715) RGD PMID:2061715 MGI:MGI:3709684 NCBI chr16:79,828,321...79,838,212
Ensembl chr16:79,828,324...79,838,212
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO MGI:MGI:3589208 (MGI:MGI:5140688|PMID:21338882) RGD PMID:21338882 MGI:MGI:5140688 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 ISO
IEA
MGI:MGI:105373|MGI:MGI:95729|MGI:MGI:98297 (MGI:MGI:5441704|PMID:21552265)
GO_REF:0000107
RGD
Ensembl
PMID:21552265 GO_REF:0000107, MGI:MGI:5441704 NCBI chr 8:5,217,054...5,436,969
Ensembl chr 8:5,217,217...5,429,581
JBrowse link
G Gbx1 gastrulation brain homeobox 1 ISO (MGI:MGI:5491108|PMID:23418536) RGD PMID:23418536 MGI:MGI:5491108 NCBI chr 4:7,173,961...7,200,752
Ensembl chr 4:7,173,961...7,200,752
JBrowse link
G Gdpd5 glycerophosphodiester phosphodiesterase domain containing 5 ISO MGI:MGI:5302017 (MGI:MGI:5299268|PMID:21943603) RGD PMID:21943603 MGI:MGI:5299268 NCBI chr 1:164,337,176...164,418,056
Ensembl chr 1:164,380,577...164,418,593
JBrowse link
G Gigyf2 GRB10 interacting GYF protein 2 ISO MGI:MGI:4126459 (MGI:MGI:4366664|PMID:19744960) RGD PMID:19744960 MGI:MGI:4366664 NCBI chr 9:94,425,191...94,550,431
Ensembl chr 9:94,425,252...94,550,431
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:MGI:1857509 (MGI:MGI:5441704|PMID:21552265) RGD PMID:21552265 MGI:MGI:5441704 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:MGI:107736 (MGI:MGI:5441704|PMID:21552265) RGD PMID:21552265 MGI:MGI:5441704 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Ift172 intraflagellar transport 172 ISO MGI:MGI:2682066 (MGI:MGI:5441704|PMID:21552265) RGD PMID:21552265 MGI:MGI:5441704 NCBI chr 6:26,390,686...26,485,459 JBrowse link
G Ighmbp2 immunoglobulin mu DNA binding protein 2 ISO MGI:MGI:1857648 (MGI:MGI:3845694|PMID:19299493) RGD PMID:19299493 MGI:MGI:3845694 NCBI chr 1:218,509,274...218,531,922
Ensembl chr 1:218,508,950...218,532,142
JBrowse link
G Isl1 ISL LIM homeobox 1 ISO MGI:MGI:2182246 (MGI:MGI:78615|PMID:8565076) RGD PMID:8565076 MGI:MGI:78615 NCBI chr 2:48,488,911...48,501,217
Ensembl chr 2:48,487,736...48,501,436
JBrowse link
G Lbx1 ladybird homeobox 1 ISO MGI:MGI:2149955 (MGI:MGI:3531376|PMID:15769945) RGD PMID:15769945 MGI:MGI:3531376 NCBI chr 1:264,973,315...264,975,132
Ensembl chr 1:264,973,315...264,975,132
JBrowse link
G Lmo4 LIM domain only 4 ISO (MGI:MGI:4356383|PMID:19666821) RGD PMID:19666821 MGI:MGI:4356383 NCBI chr 2:250,218,635...250,235,435
Ensembl chr 2:250,218,641...250,241,673
JBrowse link
G Mdga2 MAM domain containing glycosylphosphatidylinositol anchor 2 IEP PMID:15019943 HGNC PMID:15019943 RGD:8554528 NCBI chr 6:88,442,620...89,292,454
Ensembl chr 6:88,447,749...88,917,070
JBrowse link
G Mir17 microRNA 17 ISO MGI:MGI:2676844|MGI:MGI:2676868|MGI:MGI:2676872|MGI:MGI:3618743|MGI:MGI:3619438|MGI:MGI:3629917|MGI:MGI:3629918|MGI:MGI:3790968 (MGI:MGI:5140688|PMID:21338882) RGD PMID:21338882 MGI:MGI:5140688 NCBI chr15:100,179,879...100,179,962
Ensembl chr15:100,179,879...100,179,962
JBrowse link
G Mir18a microRNA 18a ISO MGI:MGI:2676868|MGI:MGI:2676872|MGI:MGI:3618743|MGI:MGI:3619065|MGI:MGI:3619438|MGI:MGI:3629917|MGI:MGI:3629918 (MGI:MGI:5140688|PMID:21338882) RGD PMID:21338882 MGI:MGI:5140688 NCBI chr15:100,180,015...100,180,110
Ensembl chr15:100,180,015...100,180,110
JBrowse link
G Mir19a microRNA 19a ISO MGI:MGI:2676844|MGI:MGI:2676872|MGI:MGI:3619065|MGI:MGI:3629917|MGI:MGI:3629918 (MGI:MGI:5140688|PMID:21338882) RGD PMID:21338882 MGI:MGI:5140688 NCBI chr15:100,180,162...100,180,243
Ensembl chr15:100,180,162...100,180,243
JBrowse link
G Mir19b1 microRNA 19b-1 ISO MGI:MGI:2676844|MGI:MGI:2676872|MGI:MGI:3618743|MGI:MGI:3619065|MGI:MGI:3629918 (MGI:MGI:5139953|PMID:21741442) RGD PMID:21741442 MGI:MGI:5139953 NCBI chr15:100,180,464...100,180,550
Ensembl chr15:100,180,464...100,180,550
JBrowse link
G Mir20a microRNA 20a ISO MGI:MGI:2676844|MGI:MGI:3618743|MGI:MGI:3619065|MGI:MGI:3629917|MGI:MGI:3629918 (MGI:MGI:5140688|PMID:21338882) RGD PMID:21338882 MGI:MGI:5140688 NCBI chr15:100,180,334...100,180,418
Ensembl chr15:100,180,334...100,180,418
JBrowse link
G Mir92a1 microRNA 92a-1 ISO MGI:MGI:2676844|MGI:MGI:2676872|MGI:MGI:3618743|MGI:MGI:3619065|MGI:MGI:3629917 (MGI:MGI:5140688|PMID:21338882) RGD PMID:21338882 MGI:MGI:5140688 NCBI chr15:100,180,586...100,180,663
Ensembl chr15:100,180,586...100,180,663
JBrowse link
G Nfe2l1 nuclear factor, erythroid 2-like 1 ISO MGI:MGI:3828165 (MGI:MGI:5433806|PMID:21554501) RGD PMID:21554501 MGI:MGI:5433806 NCBI chr10:84,686,762...84,699,313
Ensembl chr10:84,682,460...84,698,886
JBrowse link
G Nkx2-2 NK2 homeobox 2 ISO MGI:MGI:1932100 (MGI:MGI:1334824|PMID:10217145) RGD PMID:10217145 MGI:MGI:1334824 NCBI chr 3:141,408,460...141,419,083
Ensembl chr 3:141,408,798...141,411,170
JBrowse link
G Olig2 oligodendrocyte transcription factor 2 ISO MGI:MGI:3774124 (MGI:MGI:5140688|PMID:21338882) RGD PMID:21338882 MGI:MGI:5140688 NCBI chr11:31,389,514...31,392,890
Ensembl chr11:31,389,514...31,392,890
JBrowse link
G Olig3 oligodendrocyte transcription factor 3 ISO MGI:MGI:104867|MGI:MGI:3573868 (MGI:MGI:3530702|PMID:15674731), (MGI:MGI:3531376|PMID:15769945) RGD PMID:15674731, PMID:15769945 MGI:MGI:3530702, MGI:MGI:3531376 NCBI chr 1:14,797,766...14,799,835
Ensembl chr 1:14,797,766...14,799,835
JBrowse link
G Ptch1 patched 1 ISO MGI:MGI:107736 (MGI:MGI:5441704|PMID:21552265) RGD PMID:21552265 MGI:MGI:5441704 NCBI chr17:1,032,242...1,085,885
Ensembl chr17:1,029,048...1,093,873
JBrowse link
G Scyl1 SCY1 like pseudokinase 1 ISO MGI:MGI:1921385|MGI:MGI:5469960 (MGI:MGI:6161057|PMID:29437892) RGD PMID:29437892 MGI:MGI:6161057 NCBI chr 1:221,115,992...221,129,668
Ensembl chr 1:221,115,860...221,129,654
JBrowse link
G Scyl3 SCY1 like pseudokinase 3 ISO MGI:MGI:1931787 (MGI:MGI:6161057|PMID:29437892) RGD PMID:29437892 MGI:MGI:6161057 NCBI chr13:82,230,938...82,255,640
Ensembl chr13:82,231,030...82,254,318
JBrowse link
G Shh sonic hedgehog signaling molecule ISO
IEA
MGI:MGI:107736 (MGI:MGI:5441704|PMID:21552265)
GO_REF:0000107
RGD
Ensembl
PMID:21552265 GO_REF:0000107, MGI:MGI:5441704 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Sox4 SRY-box transcription factor 4 ISO (MGI:MGI:4838379|PMID:20646169) RGD PMID:20646169 MGI:MGI:4838379 NCBI chr17:37,615,022...37,619,728 JBrowse link
spinal cord oligodendrocyte cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 ISO MGI:MGI:1355331|MGI:MGI:97347 (MGI:MGI:3794240|PMID:18287202) RGD PMID:18287202 MGI:MGI:3794240 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
G Nkx2-2 NK2 homeobox 2 ISO MGI:MGI:1932100|MGI:MGI:96919 (MGI:MGI:3574147|PMID:11526078), (MGI:MGI:3794240|PMID:18287202) RGD PMID:11526078, PMID:18287202 MGI:MGI:3574147, MGI:MGI:3794240 NCBI chr 3:141,408,460...141,419,083
Ensembl chr 3:141,408,798...141,411,170
JBrowse link
G Olig2 oligodendrocyte transcription factor 2 ISO MGI:MGI:96919 (MGI:MGI:3794240|PMID:18287202) RGD PMID:18287202 MGI:MGI:3794240 NCBI chr11:31,389,514...31,392,890
Ensembl chr11:31,389,514...31,392,890
JBrowse link
G Sox13 SRY-box transcription factor 13 ISO UniProtKB:P40645 (MGI:MGI:5766856|PMID:26525805) RGD PMID:26525805 MGI:MGI:5766856 NCBI chr13:50,434,702...50,479,118
Ensembl chr13:50,434,702...50,479,657
JBrowse link
G Sox6 SRY-box transcription factor 6 ISO (MGI:MGI:5766856|PMID:26525805) RGD PMID:26525805 MGI:MGI:5766856 NCBI chr 1:185,631,702...186,186,192
Ensembl chr 1:185,673,177...186,182,829
JBrowse link
spinal cord oligodendrocyte cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 ISO MGI:MGI:1857470 (MGI:MGI:3794240|PMID:18287202) RGD PMID:18287202 MGI:MGI:3794240 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
G Nkx2-2 NK2 homeobox 2 ISO (MGI:MGI:3794240|PMID:18287202) RGD PMID:18287202 MGI:MGI:3794240 NCBI chr 3:141,408,460...141,419,083
Ensembl chr 3:141,408,798...141,411,170
JBrowse link
G Olig2 oligodendrocyte transcription factor 2 ISO (MGI:MGI:3794240|PMID:18287202) RGD PMID:18287202 MGI:MGI:3794240 NCBI chr11:31,389,514...31,392,890
Ensembl chr11:31,389,514...31,392,890
JBrowse link
ventral spinal cord interneuron differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxn4 forkhead box N4 ISO (MGI:MGI:4834949|PMID:20844123) RGD PMID:20844123 MGI:MGI:4834949 NCBI chr12:48,101,012...48,121,281
Ensembl chr12:48,101,673...48,121,270
JBrowse link
G Gata2 GATA binding protein 2 ISO MGI:MGI:1857743 (MGI:MGI:1861374|PMID:10934027) RGD PMID:10934027 MGI:MGI:1861374 NCBI chr 4:120,129,028...120,142,490
Ensembl chr 4:120,133,713...120,142,488
JBrowse link
G Lmo4 LIM domain only 4 ISO (MGI:MGI:4356383|PMID:19666821) RGD PMID:19666821 MGI:MGI:4356383 NCBI chr 2:250,218,635...250,235,435
Ensembl chr 2:250,218,641...250,241,673
JBrowse link
ventral spinal cord interneuron fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 ISO
ISS
(MGI:MGI:3587461|PMID:16020526)
GO_REF:0000024
RGD
UniProt
PMID:16020526 GO_REF:0000024, MGI:MGI:3587461 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
G Dll4 delta like canonical Notch ligand 4 ISO UniProtKB:Q8K3Q3 (PMID:17728344) RGD PMID:17728344 NCBI chr 3:111,135,011...111,146,746
Ensembl chr 3:111,135,021...111,145,986
JBrowse link
G Foxn4 forkhead box N4 ISO (MGI:MGI:3587461|PMID:16020526), (MGI:MGI:3765356|PMID:17728344) RGD PMID:16020526, PMID:17728344 MGI:MGI:3587461, MGI:MGI:3765356 NCBI chr12:48,101,012...48,121,281
Ensembl chr12:48,101,673...48,121,270
JBrowse link
ventral spinal cord interneuron fate determination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-2 NK2 homeobox 2 ISO MGI:MGI:1932100 (MGI:MGI:1334824|PMID:10217145) RGD PMID:10217145 MGI:MGI:1334824 NCBI chr 3:141,408,460...141,419,083
Ensembl chr 3:141,408,798...141,411,170
JBrowse link
ventral spinal cord interneuron specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbx1 developing brain homeobox 1 ISO MGI:MGI:2182329 (MGI:MGI:2136554|PMID:11239429) RGD PMID:11239429 MGI:MGI:2136554 NCBI chr 1:104,969,218...104,973,648
Ensembl chr 1:104,969,218...104,973,648
JBrowse link
G Dmrt3 doublesex and mab-3 related transcription factor 3 ISO MGI:MGI:4420993 (MGI:MGI:5435948|PMID:22932389) RGD PMID:22932389 MGI:MGI:5435948 NCBI chr 1:243,589,607...243,602,926
Ensembl chr 1:243,589,607...243,602,926
JBrowse link
G Lhx3 LIM homeobox 3 ISO (MGI:MGI:4356383|PMID:19666821) RGD PMID:19666821 MGI:MGI:4356383 NCBI chr 3:3,653,861...3,662,509
Ensembl chr 3:3,654,755...3,661,810
JBrowse link
G Shh sonic hedgehog signaling molecule IDA PMID:9230312 MGI PMID:9230312 RGD:8553789 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Sox1 SRY-box transcription factor 1 ISO MGI:MGI:3653406 (MGI:MGI:4834949|PMID:20844123) RGD PMID:20844123 MGI:MGI:4834949
visceral motor neuron differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isl1 ISL LIM homeobox 1 ISO MGI:MGI:109156 (MGI:MGI:3041365|PMID:14766174) RGD PMID:14766174 MGI:MGI:3041365 NCBI chr 2:48,488,911...48,501,217
Ensembl chr 2:48,487,736...48,501,436
JBrowse link
G Isl2 ISL LIM homeobox 2 ISO
IEA
MGI:MGI:101791|MGI:MGI:3046260 (MGI:MGI:3041365|PMID:14766174)
GO_REF:0000107
RGD
Ensembl
PMID:14766174 GO_REF:0000107, MGI:MGI:3041365 NCBI chr 8:60,117,565...60,122,716
Ensembl chr 8:60,117,729...60,122,211
JBrowse link
G Tbx20 T-box transcription factor 20 ISO (MGI:MGI:3604925|PMID:15843409) RGD PMID:15843409 MGI:MGI:3604925 NCBI chr 8:25,849,394...25,904,570
Ensembl chr 8:25,850,962...25,904,570
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    cellular process 18800
      cellular developmental process 4459
        cell differentiation 4364
          cell differentiation in spinal cord 67
            commissural neuron differentiation in spinal cord + 1
            medial motor column neuron differentiation 2
            spinal cord association neuron differentiation + 15
            spinal cord motor neuron differentiation + 44
            spinal cord oligodendrocyte cell differentiation + 5
            spinal cord radial glial cell differentiation 0
            ventral spinal cord interneuron differentiation + 18
Path 2
Term Annotations click to browse term
  biological_process 20028
    developmental process 6827
      anatomical structure development 6269
        multicellular organism development 5744
          system development 5280
            nervous system development 2722
              central nervous system development 1262
                spinal cord development 144
                  cell differentiation in spinal cord 67
                    commissural neuron differentiation in spinal cord + 1
                    medial motor column neuron differentiation 2
                    spinal cord association neuron differentiation + 15
                    spinal cord motor neuron differentiation + 44
                    spinal cord oligodendrocyte cell differentiation + 5
                    spinal cord radial glial cell differentiation 0
                    ventral spinal cord interneuron differentiation + 18
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.