Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:spinal cord development
go back to main search page
Accession:GO:0021510 term browser browse the term
Definition:The process whose specific outcome is the progression of the spinal cord over time, from its formation to the mature structure. The spinal cord primarily conducts sensory and motor nerve impulses between the brain and the peripheral nervous tissues.


show annotations for term's descendants           Sort by:
spinal cord development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAN aggrecan ISO RGD PMID:18364019 RGD:2315810 NCBI chr15:88,803,436...88,875,353
Ensembl chr15:88,803,436...88,875,353 		JBrowse link
G ACTL6A actin like 6A involved_in ISO
IEA		 RGD
Ensembl		 PMID:23677776 GO_REF:0000107 RGD:9587760 NCBI chr 3:179,562,926...179,588,407
Ensembl chr 3:179,562,886...179,588,407 		JBrowse link
G ACTL6B actin like 6B ISO RGD PMID:23677776 RGD:9587760 NCBI chr 7:100,643,097...100,656,448
Ensembl chr 7:100,643,097...100,656,448 		JBrowse link
G AHI1 Abelson helper integration site 1 ISO RGD PMID:19819228 RGD:11537397 NCBI chr 6:135,283,532...135,497,740
Ensembl chr 6:135,283,407...135,498,434 		JBrowse link
G AKAP5 A-kinase anchoring protein 5 ISO RGD PMID:19535604 RGD:2313144 NCBI chr14:64,465,499...64,474,503
Ensembl chr14:64,465,499...64,474,503 		JBrowse link
G AKT1 AKT serine/threonine kinase 1 ISO RGD PMID:23681769 RGD:10040966 NCBI chr14:104,769,349...104,795,748
Ensembl chr14:104,769,349...104,795,751 		JBrowse link
G BAG3 BAG cochaperone 3 ISO RGD PMID:19415333 RGD:2325845 NCBI chr10:119,651,380...119,677,819
Ensembl chr10:119,651,380...119,677,819 		JBrowse link
G DCX doublecortin ISO RGD PMID:25487013 RGD:12904756 NCBI chr  X:111,293,779...111,412,192
Ensembl chr  X:111,293,779...111,412,429 		JBrowse link
G DLL1 delta like canonical Notch ligand 1 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:170,282,206...170,291,078
Ensembl chr 6:170,282,206...170,306,565 		JBrowse link
G DPYSL2 dihydropyrimidinase like 2 ISO RGD PMID:8946055 RGD:2316253 NCBI chr 8:26,514,031...26,658,175
Ensembl chr 8:26,514,031...26,658,178 		JBrowse link
G EED embryonic ectoderm development involved_in ISO
IEA		 RGD
Ensembl		 PMID:20515739 GO_REF:0000107 RGD:9491842 NCBI chr11:86,244,753...86,287,615
Ensembl chr11:86,201,212...86,278,813 		JBrowse link
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:21935678), (PMID:23717624), (PMID:31666661) MGI PMID:21935678 PMID:23717624 PMID:31666661 NCBI chr 6:131,808,020...131,895,155
Ensembl chr 6:131,808,016...131,895,155 		JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17020410) Ensembl
MGI		 PMID:17020410 GO_REF:0000107 NCBI chr19:45,349,837...45,370,573
Ensembl chr19:45,349,837...45,370,918 		JBrowse link
G FOXB1 forkhead box B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:60,004,311...60,007,444
Ensembl chr15:60,004,234...60,061,730 		JBrowse link
G FUZ fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (PMID:19877275) MGI PMID:19877275 NCBI chr19:49,806,866...49,813,553
Ensembl chr19:49,806,866...49,817,376 		JBrowse link
G GLRA2 glycine receptor alpha 2 ISO RGD PMID:12124753 RGD:708602 NCBI chr  X:14,448,779...14,731,812
Ensembl chr  X:14,529,298...14,731,812 		JBrowse link
G GRIA1 glutamate ionotropic receptor AMPA type subunit 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:19446017 GO_REF:0000107 RGD:2325980 NCBI chr 5:153,489,615...153,813,869
Ensembl chr 5:153,489,615...153,813,869 		JBrowse link
G GRIN2A glutamate ionotropic receptor NMDA type subunit 2A ISO RGD PMID:19446017 RGD:2325980 NCBI chr16:9,753,404...10,182,908
Ensembl chr16:9,753,404...10,182,928 		JBrowse link
G KCNH2 potassium voltage-gated channel subfamily H member 2 ISO RGD PMID:15365256 RGD:7243961 NCBI chr 7:150,944,961...150,978,321
Ensembl chr 7:150,944,961...150,978,321 		JBrowse link
G LHX1 LIM homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:36,936,785...36,944,612
Ensembl chr17:36,936,785...36,944,612 		JBrowse link
G LOXL3 lysyl oxidase like 3 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:74,532,258...74,555,702
Ensembl chr 2:74,532,258...74,555,690 		JBrowse link
G MECP2 methyl-CpG binding protein 2 involved_in ISO
IEA		 cervical spinal cord RGD
Ensembl		 PMID:12605461 GO_REF:0000107 RGD:12790706 NCBI chr  X:154,021,573...154,097,717
Ensembl chr  X:154,021,573...154,137,103 		JBrowse link
G MED12 mediator complex subunit 12 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20589884) Ensembl
MGI		 PMID:20589884 GO_REF:0000107 NCBI chr  X:71,118,596...71,142,450
Ensembl chr  X:71,118,543...71,144,103 		JBrowse link
G MPST mercaptopyruvate sulfurtransferase involved_in ISO
IEA		 RGD
Ensembl		 PMID:9078435 GO_REF:0000107 RGD:9686095 NCBI chr22:37,019,742...37,029,815
Ensembl chr22:37,019,635...37,029,821 		JBrowse link
G MTOR mechanistic target of rapamycin kinase ISO RGD PMID:23681769 RGD:10040966 NCBI chr 1:11,106,535...11,262,551
Ensembl chr 1:11,106,535...11,262,556 		JBrowse link
G NEFH neurofilament heavy chain ISO RGD PMID:2108255 RGD:9698442 NCBI chr22:29,480,218...29,491,390
Ensembl chr22:29,480,218...29,491,390 		JBrowse link
G NEFL neurofilament light chain involved_in ISO
IEA		 RGD
Ensembl		 PMID:2108255 GO_REF:0000107 RGD:9698442 NCBI chr 8:24,950,955...24,956,612
Ensembl chr 8:24,950,955...24,956,721 		JBrowse link
G NEFM neurofilament medium chain ISO RGD PMID:2108255 RGD:9698442 NCBI chr 8:24,913,761...24,919,093
Ensembl chr 8:24,913,758...24,919,098 		JBrowse link
G NEUROG3 neurogenin 3 involved_in ISO
IEA		 RGD
Ensembl		 PMID:9130143 GO_REF:0000107 RGD:633362 NCBI chr10:69,571,485...69,573,422
Ensembl chr10:69,571,698...69,573,422 		JBrowse link
G NF1 neurofibromin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO
ISS		 (PMID:16906226) Ensembl
MGI
HGNC-UCL		 PMID:16906226 GO_REF:0000024 GO_REF:0000107 NCBI chr17:31,094,927...31,377,677
Ensembl chr17:31,094,927...31,382,116 		JBrowse link
G NFIX nuclear factor I X involved_in ISO (PMID:17353270) MGI PMID:17353270 NCBI chr19:12,995,475...13,098,796
Ensembl chr19:12,995,475...13,098,796 		JBrowse link
G NOG noggin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16712836) Ensembl
MGI		 PMID:16712836 GO_REF:0000107 NCBI chr17:56,593,699...56,595,611
Ensembl chr17:56,593,699...56,595,611 		JBrowse link
G NOVA1 NOVA alternative splicing regulator 1 ISO RGD PMID:12124753 RGD:708602 NCBI chr14:26,443,090...26,598,033
Ensembl chr14:26,443,090...26,598,033 		JBrowse link
G NPFF neuropeptide FF-amide peptide precursor ISO RGD PMID:12619141 RGD:1299340 NCBI chr12:53,506,688...53,507,484
Ensembl chr12:53,506,688...53,507,484 		JBrowse link
G PAX6 paired box 6 involved_in ISO
IEA		 RGD
Ensembl		 PMID:20195794 GO_REF:0000107 RGD:2325285 NCBI chr11:31,789,026...31,817,961
Ensembl chr11:31,784,779...31,817,961 		JBrowse link
G PHGDH phosphoglycerate dehydrogenase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19114063) Ensembl
MGI		 PMID:19114063 GO_REF:0000107 NCBI chr 1:119,711,934...119,744,215
Ensembl chr 1:119,648,411...119,744,218 		JBrowse link
G PKD1 polycystin 1, transient receptor potential channel interacting involved_in IEP (PMID:11891195) UniProt PMID:11891195 NCBI chr16:2,088,708...2,135,898
Ensembl chr16:2,088,708...2,135,898 		JBrowse link
G PKD2 polycystin 2, transient receptor potential cation channel involved_in IEP (PMID:11891195) UniProt PMID:11891195 NCBI chr 4:88,007,635...88,077,777
Ensembl chr 4:88,007,635...88,077,777 		JBrowse link
G PLXDC1 plexin domain containing 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:20411127 GO_REF:0000107 RGD:2325872 NCBI chr17:39,063,313...39,152,967
Ensembl chr17:39,063,313...39,154,394 		JBrowse link
G PTBP2 polypyrimidine tract binding protein 2 ISO RGD PMID:12124753 RGD:708602 NCBI chr 1:96,721,784...96,823,739
Ensembl chr 1:96,721,665...96,823,738 		JBrowse link
G PTN pleiotrophin ISO RGD PMID:8453763 RGD:9831456 NCBI chr 7:137,227,341...137,343,733
Ensembl chr 7:137,227,341...137,343,774 		JBrowse link
G PTPRS protein tyrosine phosphatase receptor type S involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15842738) Ensembl
MGI		 PMID:15842738 GO_REF:0000107 NCBI chr19:5,205,508...5,340,812
Ensembl chr19:5,158,495...5,340,812 		JBrowse link
G RAPGEF3 Rap guanine nucleotide exchange factor 3 ISO RGD PMID:18583150 RGD:9835386 NCBI chr12:47,734,363...47,758,880
Ensembl chr12:47,734,363...47,771,040 		JBrowse link
G RAPGEF4 Rap guanine nucleotide exchange factor 4 ISO RGD PMID:18583150 RGD:9835386 NCBI chr 2:172,735,318...173,052,893
Ensembl chr 2:172,735,274...173,052,893 		JBrowse link
G RNF2 ring finger protein 2 ISO RGD PMID:20515739 RGD:9491842 NCBI chr 1:185,045,558...185,102,603
Ensembl chr 1:185,045,526...185,102,603 		JBrowse link
G ROBO1 roundabout guidance receptor 1 ISO RGD PMID:10102268 RGD:68763 NCBI chr 3:78,597,239...79,767,998
Ensembl chr 3:78,597,239...79,767,998 		JBrowse link
G ROBO2 roundabout guidance receptor 2 ISO RGD PMID:10102268 RGD:68763 NCBI chr 3:75,906,675...77,649,964
Ensembl chr 3:75,906,695...77,649,964 		JBrowse link
G SLIT1 slit guidance ligand 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:10102268 GO_REF:0000107 RGD:68763 NCBI chr10:96,998,038...97,185,959
Ensembl chr10:96,998,038...97,185,959 		JBrowse link
G SLIT2 slit guidance ligand 2 ISO RGD PMID:10102268 RGD:68763 NCBI chr 4:20,251,905...20,620,561
Ensembl chr 4:20,251,905...20,620,561 		JBrowse link
G SLIT3 slit guidance ligand 3 ISO RGD PMID:10102268 RGD:68763 NCBI chr 5:168,661,740...169,301,139
Ensembl chr 5:168,661,740...169,301,139 		JBrowse link
G SOX11 SRY-box transcription factor 11 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:5,692,384...5,701,385
Ensembl chr 2:5,692,384...5,701,385 		JBrowse link
G SOX12 SRY-box transcription factor 12 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr20:325,552...330,224
Ensembl chr20:325,552...330,224 		JBrowse link
G SOX4 SRY-box transcription factor 4 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:21,593,751...21,598,619
Ensembl chr 6:21,593,751...21,598,619 		JBrowse link
G SRD5A1 steroid 5 alpha-reductase 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:8770891 GO_REF:0000107 RGD:4892048 NCBI chr 5:6,633,440...6,674,386
Ensembl chr 5:6,633,290...6,676,539 		JBrowse link
G SUZ12 SUZ12 polycomb repressive complex 2 subunit ISO RGD PMID:20515739 RGD:9491842 NCBI chr17:31,937,007...32,001,038
Ensembl chr17:31,937,007...32,001,038 		JBrowse link
G VIT vitrin involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:36,696,707...36,814,794
Ensembl chr 2:36,696,690...36,814,794 		JBrowse link
G ZIC1 Zic family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:147,409,365...147,416,719
Ensembl chr 3:147,393,422...147,510,293 		JBrowse link
G ZPR1 ZPR1 zinc finger involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr11:116,773,799...116,788,023
Ensembl chr11:116,773,799...116,788,039 		JBrowse link
cell differentiation in spinal cord term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBX1 developing brain homeobox 1 involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr11:20,156,155...20,160,475
Ensembl chr11:20,156,155...20,160,475 		JBrowse link
G NOTCH1 notch receptor 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:20195794 GO_REF:0000107 RGD:2325285 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048 		JBrowse link
commissural neuron differentiation in spinal cord term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DRAXIN dorsal inhibitory axon guidance protein involved_in IEA
IBA
ISS		 Ensembl
GO_Central
TreeGrafter
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:11,686,635...11,725,857
Ensembl chr 1:11,691,710...11,725,857 		JBrowse link
dorsal spinal cord development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DAAM2 dishevelled associated activator of morphogenesis 2 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:39,792,376...39,904,869
Ensembl chr 6:39,792,298...39,904,877 		JBrowse link
G DRAXIN dorsal inhibitory axon guidance protein involved_in IEA
IBA
ISS		 Ensembl
TreeGrafter
GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:11,686,635...11,725,857
Ensembl chr 1:11,691,710...11,725,857 		JBrowse link
G DRGX dorsal root ganglia homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16978876) Ensembl
MGI		 PMID:16978876 GO_REF:0000107 NCBI chr10:49,364,066...49,396,089
Ensembl chr10:49,364,066...49,396,089 		JBrowse link
G GDNF glial cell derived neurotrophic factor involved_in IEA
ISS		 Ensembl
ARUK-UCL		 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:37,812,677...37,840,041
Ensembl chr 5:37,812,677...37,840,041 		JBrowse link
G HOXB8 homeobox B8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10559485), (PMID:18430798) Ensembl
MGI		 PMID:10559485 PMID:18430798 GO_REF:0000107 NCBI chr17:48,612,346...48,615,292
Ensembl chr17:48,611,377...48,615,292 		JBrowse link
G PBX3 PBX homeobox 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18155191) Ensembl
MGI		 PMID:18155191 GO_REF:0000107 NCBI chr 9:125,747,373...125,967,377
Ensembl chr 9:125,747,345...125,967,377 		JBrowse link
G PROX1 prospero homeobox 1 involved_in ISS (PMID:11789987) BHF-UCL PMID:11789987 NCBI chr 1:213,983,151...214,041,510
Ensembl chr 1:213,983,181...214,041,510 		JBrowse link
G UNCX UNC homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10804168)
(PMID:10804169)		 Ensembl
MGI		 PMID:10804168 PMID:10804169 GO_REF:0000107 NCBI chr 7:1,232,872...1,237,326
Ensembl chr 7:1,232,872...1,237,326 		JBrowse link
medial motor column neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LHX3 LIM homeobox 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9865699) Ensembl
MGI		 PMID:9865699 GO_REF:0000107 NCBI chr 9:136,196,250...136,205,128
Ensembl chr 9:136,196,250...136,205,128 		JBrowse link
G LHX4 LIM homeobox 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9865699) Ensembl
MGI		 PMID:9865699 GO_REF:0000107 NCBI chr 1:180,228,375...180,278,984
Ensembl chr 1:180,230,264...180,278,984 		JBrowse link
negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RFX4 regulatory factor X4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:106,583,004...106,762,803
Ensembl chr12:106,583,004...106,762,803 		JBrowse link
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15215207) Ensembl
MGI		 PMID:15215207 GO_REF:0000107 NCBI chr 2:120,735,868...120,992,653
Ensembl chr 2:120,735,623...120,992,653 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15215207) Ensembl
MGI		 PMID:15215207 GO_REF:0000107 NCBI chr 7:41,960,949...42,264,268
Ensembl chr 7:41,960,949...42,264,100 		JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19684112) Ensembl
MGI		 PMID:19684112 GO_REF:0000107 NCBI chr10:102,502,819...102,633,535
Ensembl chr10:102,503,972...102,633,535 		JBrowse link
smoothened signaling pathway involved in ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 ISS
ISO
IEA		 (PMID:15215207) UniProt
MGI
Ensembl		 PMID:15215207 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:120,735,868...120,992,653
Ensembl chr 2:120,735,623...120,992,653 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15215207) Ensembl
MGI		 PMID:15215207 GO_REF:0000107 NCBI chr 7:41,960,949...42,264,268
Ensembl chr 7:41,960,949...42,264,100 		JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19684112) Ensembl
MGI		 PMID:19684112 GO_REF:0000107 NCBI chr10:102,502,819...102,633,535
Ensembl chr10:102,503,972...102,633,535 		JBrowse link
somatic motor neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLN8 CLN8 transmembrane ER and ERGIC protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21052544) Ensembl
MGI		 PMID:21052544 GO_REF:0000107 NCBI chr 8:1,753,059...1,786,570
Ensembl chr 8:1,755,778...1,801,711 		JBrowse link
G PHOX2A paired like homeobox 2A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16319924) Ensembl
MGI		 PMID:16319924 GO_REF:0000107 NCBI chr11:72,239,077...72,244,176
Ensembl chr11:72,239,077...72,245,664 		JBrowse link
G TCTN1 tectonic family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16357211) Ensembl
MGI		 PMID:16357211 GO_REF:0000107 NCBI chr12:110,614,129...110,649,430
Ensembl chr12:110,614,027...110,663,431 		JBrowse link
spinal cord anterior/posterior patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GDF11 growth differentiation factor 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16790475) Ensembl
MGI		 PMID:16790475 GO_REF:0000107 NCBI chr12:55,743,122...55,757,264
Ensembl chr12:55,743,122...55,757,264 		JBrowse link
spinal cord association neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16715081) Ensembl
MGI		 PMID:16715081 GO_REF:0000107 NCBI chr12:102,957,674...102,960,513
Ensembl chr12:102,957,674...102,960,513 		JBrowse link
G GDF7 growth differentiation factor 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10693795) Ensembl
MGI		 PMID:10693795 GO_REF:0000107 NCBI chr 2:20,667,144...20,679,243
Ensembl chr 2:20,667,144...20,679,243 		JBrowse link
G GSX1 GS homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16715081) Ensembl
MGI		 PMID:16715081 GO_REF:0000107 NCBI chr13:27,792,483...27,794,768
Ensembl chr13:27,792,483...27,794,768 		JBrowse link
G GSX2 GS homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16715081) Ensembl
MGI		 PMID:16715081 GO_REF:0000107 NCBI chr 4:54,100,163...54,102,498
Ensembl chr 4:54,099,523...54,102,498 		JBrowse link
G LHX1 LIM homeobox 1 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr17:36,936,785...36,944,612
Ensembl chr17:36,936,785...36,944,612 		JBrowse link
G LHX3 LIM homeobox 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19323994) Ensembl
MGI		 PMID:19323994 GO_REF:0000107 NCBI chr 9:136,196,250...136,205,128
Ensembl chr 9:136,196,250...136,205,128 		JBrowse link
G LHX5 LIM homeobox 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:113,462,033...113,471,871
Ensembl chr12:113,462,033...113,472,280 		JBrowse link
G LMO4 LIM domain only 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19323994) Ensembl
MGI		 PMID:19323994 GO_REF:0000107 NCBI chr 1:87,328,880...87,348,923
Ensembl chr 1:87,328,880...87,348,923 		JBrowse link
G MDGA1 MAM domain containing glycosylphosphatidylinositol anchor 1 involved_in ISS (PMID:15019943) HGNC-UCL PMID:15019943 NCBI chr 6:37,630,679...37,697,883
Ensembl chr 6:37,630,679...37,699,306 		JBrowse link
G PAX3 paired box 3 acts_upstream_of_or_within ISO (PMID:9858722) MGI PMID:9858722 NCBI chr 2:222,199,887...222,298,998
Ensembl chr 2:222,199,887...222,298,998 		JBrowse link
G PAX7 paired box 7 acts_upstream_of_or_within ISO (PMID:9858722) MGI PMID:9858722 NCBI chr 1:18,630,846...18,748,866
Ensembl chr 1:18,630,846...18,748,866 		JBrowse link
G TAL1 TAL bHLH transcription factor 1, erythroid differentiation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19323994) Ensembl
MGI		 PMID:19323994 GO_REF:0000107 NCBI chr 1:47,216,290...47,232,335
Ensembl chr 1:47,216,290...47,232,225 		JBrowse link
G WNT1 Wnt family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11877374) Ensembl
MGI		 PMID:11877374 GO_REF:0000107 NCBI chr12:48,978,322...48,982,620
Ensembl chr12:48,978,322...48,982,620 		JBrowse link
G WNT3A Wnt family member 3A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11877374) Ensembl
MGI		 PMID:11877374 GO_REF:0000107 NCBI chr 1:228,006,998...228,061,271
Ensembl chr 1:228,006,998...228,061,271 		JBrowse link
spinal cord dorsal/ventral patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRD chordin involved_in IMP (PMID:11472837) BHF-UCL PMID:11472837 NCBI chr 3:184,380,054...184,390,739
Ensembl chr 3:184,380,054...184,390,736 		JBrowse link
G FUZ fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (PMID:21761479) MGI PMID:21761479 NCBI chr19:49,806,866...49,813,553
Ensembl chr19:49,806,866...49,817,376 		JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 ISS
ISO
IEA		 (PMID:11748151)
(PMID:15215207)
(PMID:16364285)		 UniProt
MGI
Ensembl		 PMID:11748151 PMID:15215207 PMID:16364285 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:120,735,868...120,992,653
Ensembl chr 2:120,735,623...120,992,653 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15215207)
(PMID:16364285)		 Ensembl
MGI		 PMID:15215207 PMID:16364285 GO_REF:0000107 NCBI chr 7:41,960,949...42,264,268
Ensembl chr 7:41,960,949...42,264,100 		JBrowse link
G IFT122 intraflagellar transport 122 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 3:129,440,224...129,520,507
Ensembl chr 3:129,429,607...129,520,510 		JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:21761479) MGI PMID:21761479 NCBI chr13:20,567,157...20,691,444
Ensembl chr13:20,567,138...20,691,444 		JBrowse link
G INTU inturned planar cell polarity protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21761479) Ensembl
MGI		 PMID:21761479 GO_REF:0000107 NCBI chr 4:127,632,957...127,726,737
Ensembl chr 4:127,623,271...127,726,737 		JBrowse link
G RAB23 RAB23, member RAS oncogene family acts_upstream_of_or_within ISO (PMID:14603322)
(PMID:15755804), (PMID:16364285)
(PMID:16364285)		 MGI PMID:14603322 PMID:15755804 PMID:16364285 NCBI chr 6:57,186,992...57,222,307
Ensembl chr 6:57,186,992...57,222,307 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11748151)
PMID:9230312		 Ensembl
MGI		 PMID:9230312 PMID:11748151 GO_REF:0000107 RGD:8553789 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463 		JBrowse link
G SMO smoothened, frizzled class receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:129,188,633...129,213,545
Ensembl chr 7:129,188,633...129,213,545 		JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16459298) Ensembl
MGI		 PMID:16459298 GO_REF:0000107 NCBI chr10:102,502,819...102,633,535
Ensembl chr10:102,503,972...102,633,535 		JBrowse link
spinal cord motor neuron cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOXC10 homeobox C10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18065432) Ensembl
MGI		 PMID:18065432 GO_REF:0000107 NCBI chr12:53,985,146...53,990,279
Ensembl chr12:53,985,065...53,990,279 		JBrowse link
G HOXD10 homeobox D10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18065432) Ensembl
MGI		 PMID:18065432 GO_REF:0000107 NCBI chr 2:176,116,778...176,119,937
Ensembl chr 2:176,108,790...176,119,937 		JBrowse link
G ISL1 ISL LIM homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19666821) Ensembl
MGI		 PMID:19666821 GO_REF:0000107 NCBI chr 5:51,383,448...51,394,730
Ensembl chr 5:51,383,448...51,394,730 		JBrowse link
G ISL2 ISL LIM homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19666821) Ensembl
MGI		 PMID:19666821 GO_REF:0000107 NCBI chr15:76,336,773...76,342,475
Ensembl chr15:76,336,773...76,342,475 		JBrowse link
G LHX3 LIM homeobox 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19666821) Ensembl
MGI		 PMID:19666821 GO_REF:0000107 NCBI chr 9:136,196,250...136,205,128
Ensembl chr 9:136,196,250...136,205,128 		JBrowse link
G LMO4 LIM domain only 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:87,328,880...87,348,923
Ensembl chr 1:87,328,880...87,348,923 		JBrowse link
G MNX1 motor neuron and pancreas homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:10482234) InterPro
MGI
TreeGrafter
GO_Central		 PMID:10482234 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr 7:157,004,854...157,010,663
Ensembl chr 7:156,994,051...157,010,663 		JBrowse link
G OLIG3 oligodendrocyte transcription factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15769945) Ensembl
MGI		 PMID:15769945 GO_REF:0000107 NCBI chr 6:137,492,199...137,494,394
Ensembl chr 6:137,492,199...137,494,394 		JBrowse link
spinal cord motor neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABT1 activator of basal transcription 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19299493) Ensembl
MGI		 PMID:19299493 GO_REF:0000107 NCBI chr 6:26,596,953...26,600,739
Ensembl chr 6:26,596,953...26,600,739 		JBrowse link
G CACNA1A calcium voltage-gated channel subunit alpha1 A acts_upstream_of_or_within ISO (PMID:17156092) MGI PMID:17156092 NCBI chr19:13,206,442...13,506,479
Ensembl chr19:13,206,442...13,633,025 		JBrowse link
G CLN8 CLN8 transmembrane ER and ERGIC protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:2061715) Ensembl
MGI		 PMID:2061715 GO_REF:0000107 NCBI chr 8:1,753,059...1,786,570
Ensembl chr 8:1,755,778...1,801,711 		JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:21338882) MGI PMID:21338882 NCBI chr14:95,086,228...95,158,010
Ensembl chr14:95,086,228...95,158,010 		JBrowse link
G DYNC2H1 dynein cytoplasmic 2 heavy chain 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21552265) Ensembl
MGI		 PMID:21552265 GO_REF:0000107 NCBI chr11:103,109,426...103,479,863
Ensembl chr11:103,109,410...103,479,863 		JBrowse link
G GBX1 gastrulation brain homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23418536) Ensembl
MGI		 PMID:23418536 GO_REF:0000107 NCBI chr 7:151,148,009...151,167,694
Ensembl chr 7:151,148,009...151,174,745 		JBrowse link
G GDPD5 glycerophosphodiester phosphodiesterase domain containing 5 acts_upstream_of_or_within ISO (PMID:21943603) MGI PMID:21943603 NCBI chr11:75,434,640...75,525,941
Ensembl chr11:75,434,640...75,525,941 		JBrowse link
G GIGYF2 GRB10 interacting GYF protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19744960) Ensembl
MGI		 PMID:19744960 GO_REF:0000107 NCBI chr 2:232,697,331...232,860,605
Ensembl chr 2:232,697,299...232,860,605 		JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21552265) Ensembl
MGI		 PMID:21552265 GO_REF:0000107 NCBI chr 2:120,735,868...120,992,653
Ensembl chr 2:120,735,623...120,992,653 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21552265) Ensembl
MGI		 PMID:21552265 GO_REF:0000107 NCBI chr 7:41,960,949...42,264,268
Ensembl chr 7:41,960,949...42,264,100 		JBrowse link
G IFT172 intraflagellar transport 172 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21552265) Ensembl
MGI		 PMID:21552265 GO_REF:0000107 NCBI chr 2:27,444,377...27,489,743
Ensembl chr 2:27,444,377...27,489,805 		JBrowse link
G IGHMBP2 immunoglobulin mu DNA binding protein 2 acts_upstream_of_or_within ISO (PMID:19299493) MGI PMID:19299493 NCBI chr11:68,903,891...68,940,601
Ensembl chr11:68,903,863...68,940,602 		JBrowse link
G ISL1 ISL LIM homeobox 1 involved_in
acts_upstream_of_or_within		 ISS
ISO
IEA		 (PMID:8565076) BHF-UCL
MGI
Ensembl		 PMID:8565076 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:51,383,448...51,394,730
Ensembl chr 5:51,383,448...51,394,730 		JBrowse link
G LBX1 ladybird homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15769945) Ensembl
MGI		 PMID:15769945 GO_REF:0000107 NCBI chr10:101,226,994...101,229,463
Ensembl chr10:101,226,994...101,229,463 		JBrowse link
G LMO4 LIM domain only 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19666821) Ensembl
MGI		 PMID:19666821 GO_REF:0000107 NCBI chr 1:87,328,880...87,348,923
Ensembl chr 1:87,328,880...87,348,923 		JBrowse link
G MDGA2 MAM domain containing glycosylphosphatidylinositol anchor 2 involved_in ISS (PMID:15019943) HGNC-UCL PMID:15019943 NCBI chr14:46,839,623...47,675,605
Ensembl chr14:46,840,092...47,675,605 		JBrowse link
G MIR17 microRNA 17 acts_upstream_of_or_within ISO (PMID:21338882) MGI PMID:21338882 NCBI chr13:91,350,605...91,350,688
Ensembl chr13:91,350,605...91,350,688 		JBrowse link
G MIR18A microRNA 18a acts_upstream_of_or_within ISO (PMID:21338882) MGI PMID:21338882 NCBI chr13:91,350,751...91,350,821
Ensembl chr13:91,350,751...91,350,821 		JBrowse link
G MIR19A microRNA 19a acts_upstream_of_or_within ISO (PMID:21338882) MGI PMID:21338882 NCBI chr13:91,350,891...91,350,972
Ensembl chr13:91,350,891...91,350,972 		JBrowse link
G MIR19B1 microRNA 19b-1 acts_upstream_of_or_within ISO (PMID:21741442) MGI PMID:21741442 NCBI chr13:91,351,192...91,351,278
Ensembl chr13:91,351,192...91,351,278 		JBrowse link
G MIR20A microRNA 20a acts_upstream_of_or_within ISO (PMID:21338882) MGI PMID:21338882 NCBI chr13:91,351,065...91,351,135
Ensembl chr13:91,351,065...91,351,135 		JBrowse link
G MIR92A1 microRNA 92a-1 acts_upstream_of_or_within ISO (PMID:21338882) MGI PMID:21338882 NCBI chr13:91,351,314...91,351,391
Ensembl chr13:91,351,314...91,351,391 		JBrowse link
G NFE2L1 NFE2 like bZIP transcription factor 1 acts_upstream_of_or_within ISO (PMID:21554501) MGI PMID:21554501 NCBI chr17:48,048,359...48,061,545
Ensembl chr17:48,048,329...48,061,545 		JBrowse link
G NKX2-2 NK2 homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10217145) Ensembl
MGI		 PMID:10217145 GO_REF:0000107 NCBI chr20:21,511,017...21,522,689
Ensembl chr20:21,511,017...21,514,064 		JBrowse link
G OLIG2 oligodendrocyte transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21338882) Ensembl
MGI		 PMID:21338882 GO_REF:0000107 NCBI chr21:33,025,935...33,029,185
Ensembl chr21:33,025,935...33,029,196 		JBrowse link
G OLIG3 oligodendrocyte transcription factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15674731)
(PMID:15769945)		 Ensembl
MGI		 PMID:15674731 PMID:15769945 GO_REF:0000107 NCBI chr 6:137,492,199...137,494,394
Ensembl chr 6:137,492,199...137,494,394 		JBrowse link
G PTCH1 patched 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21552265) Ensembl
MGI		 PMID:21552265 GO_REF:0000107 NCBI chr 9:95,442,980...95,516,971
Ensembl chr 9:95,442,980...95,517,057 		JBrowse link
G SCYL1 SCY1 like pseudokinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29437892) Ensembl
MGI		 PMID:29437892 GO_REF:0000107 NCBI chr11:65,525,083...65,538,704
Ensembl chr11:65,525,077...65,538,704 		JBrowse link
G SCYL3 SCY1 like pseudokinase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29437892) Ensembl
MGI		 PMID:29437892 GO_REF:0000107 NCBI chr 1:169,849,631...169,894,268
Ensembl chr 1:169,849,631...169,894,267 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21552265) Ensembl
MGI		 PMID:21552265 GO_REF:0000107 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463 		JBrowse link
G ZC4H2 zinc finger C4H2-type containing involved_in ISS UniProt GO_REF:0000024 NCBI chr  X:64,915,807...65,034,741
Ensembl chr  X:64,915,802...65,034,713 		JBrowse link
spinal cord oligodendrocyte cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18287202) Ensembl
MGI		 PMID:18287202 GO_REF:0000107 NCBI chr12:102,957,674...102,960,513
Ensembl chr12:102,957,674...102,960,513 		JBrowse link
G NKX2-2 NK2 homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18287202)
(PMID:11526078)		 Ensembl
MGI		 PMID:11526078 PMID:18287202 GO_REF:0000107 NCBI chr20:21,511,017...21,522,689
Ensembl chr20:21,511,017...21,514,064 		JBrowse link
G OLIG2 oligodendrocyte transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18287202) Ensembl
MGI		 PMID:18287202 GO_REF:0000107 NCBI chr21:33,025,935...33,029,185
Ensembl chr21:33,025,935...33,029,196 		JBrowse link
G SOX13 SRY-box transcription factor 13 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:204,073,115...204,127,743
Ensembl chr 1:204,073,115...204,127,743 		JBrowse link
G SOX6 SRY-box transcription factor 6 involved_in ISS UniProt GO_REF:0000024 NCBI chr11:15,966,449...16,738,477
Ensembl chr11:15,966,449...16,739,591 		JBrowse link
spinal cord oligodendrocyte cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18287202) Ensembl
MGI		 PMID:18287202 GO_REF:0000107 NCBI chr12:102,957,674...102,960,513
Ensembl chr12:102,957,674...102,960,513 		JBrowse link
G NKX2-2 NK2 homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18287202) Ensembl
MGI		 PMID:18287202 GO_REF:0000107 NCBI chr20:21,511,017...21,522,689
Ensembl chr20:21,511,017...21,514,064 		JBrowse link
G OLIG2 oligodendrocyte transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18287202) Ensembl
MGI		 PMID:18287202 GO_REF:0000107 NCBI chr21:33,025,935...33,029,185
Ensembl chr21:33,025,935...33,029,196 		JBrowse link
spinal cord patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RELN reelin acts_upstream_of_or_within
involved_in		 ISO
IEA
ISS		 (PMID:16580148) RGD
MGI
Ensembl
UniProt		 PMID:14648677 PMID:16580148 GO_REF:0000024 GO_REF:0000107 RGD:2317803 NCBI chr 7:103,471,789...103,989,658
Ensembl chr 7:103,471,381...103,989,658 		JBrowse link
spinal cord ventral commissure morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADARB1 adenosine deaminase RNA specific B1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20826656) Ensembl
MGI		 PMID:20826656 GO_REF:0000107 NCBI chr21:45,074,578...45,226,563
Ensembl chr21:45,073,853...45,226,560 		JBrowse link
G DCC DCC netrin 1 receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9126737) Ensembl
MGI		 PMID:9126737 GO_REF:0000107 NCBI chr18:52,340,197...53,535,899
Ensembl chr18:52,340,197...53,535,899 		JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO
ISS		 (PMID:10409510) Ensembl
MGI
UniProt		 PMID:10409510 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:120,735,868...120,992,653
Ensembl chr 2:120,735,623...120,992,653 		JBrowse link
ventral spinal cord development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD320 CD320 molecule involved_in IBA GO_Central GO_REF:0000033 NCBI chr19:8,302,127...8,308,358
Ensembl chr19:8,302,127...8,308,358 		JBrowse link
G DAB1 DAB adaptor protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:56,994,778...58,546,726
Ensembl chr 1:56,994,778...58,546,734 		JBrowse link
G DCTN1 dynactin subunit 1 involved_in IMP (PMID:18305234) ARUK-UCL PMID:18305234 NCBI chr 2:74,361,155...74,391,866
Ensembl chr 2:74,361,154...74,392,087 		JBrowse link
G FOXP1 forkhead box P1 involved_in ISO (MGI:4849611|PMID:20711475) UniProt PMID:20711475 MGI:4849611 NCBI chr 3:70,954,708...71,583,978
Ensembl chr 3:70,954,693...71,583,978 		JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 ISS
ISO
IEA		 (PMID:11748151) UniProt
MGI
Ensembl		 PMID:11748151 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:120,735,868...120,992,653
Ensembl chr 2:120,735,623...120,992,653 		JBrowse link
G LHX1 LIM homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:36,936,785...36,944,612
Ensembl chr17:36,936,785...36,944,612 		JBrowse link
G LRP8 LDL receptor related protein 8 involved_in IEA
IBA		 Ensembl
TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:53,242,364...53,328,070
Ensembl chr 1:53,242,364...53,328,469 		JBrowse link
G PAX6 paired box 6 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr11:31,789,026...31,817,961
Ensembl chr11:31,784,779...31,817,961 		JBrowse link
G RELN reelin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:103,471,789...103,989,658
Ensembl chr 7:103,471,381...103,989,658 		JBrowse link
G VLDLR very low density lipoprotein receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:2,621,787...2,660,056
Ensembl chr 9:2,621,182...2,660,056 		JBrowse link
G VSTM5 V-set and transmembrane domain containing 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:93,818,232...93,850,618
Ensembl chr11:93,818,232...93,850,618 		JBrowse link
ventral spinal cord interneuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXN4 forkhead box N4 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr12:109,277,978...109,309,284
Ensembl chr12:109,277,978...109,309,284 		JBrowse link
G GATA2 GATA binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10934027) Ensembl
MGI		 PMID:10934027 GO_REF:0000107 NCBI chr 3:128,479,422...128,493,201
Ensembl chr 3:128,479,427...128,493,201 		JBrowse link
G LMO4 LIM domain only 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19666821) Ensembl
MGI		 PMID:19666821 GO_REF:0000107 NCBI chr 1:87,328,880...87,348,923
Ensembl chr 1:87,328,880...87,348,923 		JBrowse link
ventral spinal cord interneuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr12:102,957,674...102,960,513
Ensembl chr12:102,957,674...102,960,513 		JBrowse link
G DLL4 delta like canonical Notch ligand 4 involved_in IMP (PMID:17728344) UniProt PMID:17728344 NCBI chr15:40,929,340...40,939,073
Ensembl chr15:40,929,340...40,939,073 		JBrowse link
G FOXN4 forkhead box N4 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr12:109,277,978...109,309,284
Ensembl chr12:109,277,978...109,309,284 		JBrowse link
ventral spinal cord interneuron fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NKX2-2 NK2 homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10217145) Ensembl
MGI		 PMID:10217145 GO_REF:0000107 NCBI chr20:21,511,017...21,522,689
Ensembl chr20:21,511,017...21,514,064 		JBrowse link
ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBX1 developing brain homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11239429) Ensembl
MGI		 PMID:11239429 GO_REF:0000107 NCBI chr11:20,156,155...20,160,475
Ensembl chr11:20,156,155...20,160,475 		JBrowse link
G DMRT3 doublesex and mab-3 related transcription factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22932389) Ensembl
MGI		 PMID:22932389 GO_REF:0000107 NCBI chr 9:976,655...991,732
Ensembl chr 9:976,655...991,732 		JBrowse link
G LHX3 LIM homeobox 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19666821) Ensembl
MGI		 PMID:19666821 GO_REF:0000107 NCBI chr 9:136,196,250...136,205,128
Ensembl chr 9:136,196,250...136,205,128 		JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within ISO PMID:9230312 MGI PMID:9230312 RGD:8553789 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463 		JBrowse link
G SOX1 SRY-box transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20844123) Ensembl
MGI		 PMID:20844123 GO_REF:0000107 NCBI chr13:112,067,149...112,071,706
Ensembl chr13:112,067,149...112,071,706 		JBrowse link
visceral motor neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ISL1 ISL LIM homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14766174) Ensembl
MGI		 PMID:14766174 GO_REF:0000107 NCBI chr 5:51,383,448...51,394,730
Ensembl chr 5:51,383,448...51,394,730 		JBrowse link
G ISL2 ISL LIM homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14766174) Ensembl
MGI		 PMID:14766174 GO_REF:0000107 NCBI chr15:76,336,773...76,342,475
Ensembl chr15:76,336,773...76,342,475 		JBrowse link
G TBX20 T-box transcription factor 20 involved_in IEA
ISS		 Ensembl
BHF-UCL		 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:35,202,430...35,254,100
Ensembl chr 7:35,202,430...35,254,100 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19770
    developmental process 7667
      anatomical structure development 7073
        spinal cord development 145
          cell differentiation in spinal cord + 63
          central canal development 0
          dorsal spinal cord development + 22
          spinal cord patterning + 22
          spinal cord ventral commissure morphogenesis 3
          ventral spinal cord development + 58
Path 2
Term Annotations click to browse term
  biological_process 19770
    developmental process 7667
      anatomical structure development 7073
        multicellular organism development 5676
          system development 4950
            nervous system development 3065
              central nervous system development 1305
                spinal cord development 145
                  cell differentiation in spinal cord + 63
                  central canal development 0
                  dorsal spinal cord development + 22
                  spinal cord patterning + 22
                  spinal cord ventral commissure morphogenesis 3
                  ventral spinal cord development + 58
paths to the root