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ONTOLOGY REPORT - ANNOTATIONS

Term:spinal cord development
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Accession:GO:0021510 term browser browse the term
Definition:The process whose specific outcome is the progression of the spinal cord over time, from its formation to the mature structure. The spinal cord primarily conducts sensory and motor nerve impulses between the brain and the peripheral nervous tissues.


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spinal cord development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAN aggrecan ISO RGD PMID:18364019 RGD:2315810 NCBI chr 3:51,995,100...52,031,812
Ensembl chr 3:51,969,779...52,031,544 		JBrowse link
G ACTL6A actin like 6A ISO RGD PMID:23677776 RGD:9587760 NCBI chr34:12,922,506...12,988,334
Ensembl chr34:12,960,699...12,987,962 		JBrowse link
G ACTL6B actin like 6B ISO RGD PMID:23677776 RGD:9587760 NCBI chr 6:9,045,477...9,059,106
Ensembl chr 6:9,045,551...9,058,912 		JBrowse link
G AHI1 Abelson helper integration site 1 ISO RGD PMID:19819228 RGD:11537397 NCBI chr 1:27,966,101...28,199,163
Ensembl chr 1:27,998,874...28,198,351 		JBrowse link
G AKAP5 A-kinase anchoring protein 5 ISO RGD PMID:19535604 RGD:2313144 NCBI chr 8:38,891,637...38,902,390
Ensembl chr 8:38,896,840...38,898,126 		JBrowse link
G AKT1 AKT serine/threonine kinase 1 ISO RGD PMID:23681769 RGD:10040966 NCBI chr 8:72,317,399...72,335,686
Ensembl chr 8:72,317,869...72,335,193 		JBrowse link
G BAG3 BAG cochaperone 3 ISO RGD PMID:19415333 RGD:2325845 NCBI chr28:29,792,612...29,815,466
Ensembl chr28:29,792,777...29,815,138 		JBrowse link
G DCX doublecortin ISO RGD PMID:25487013 RGD:12904756 NCBI chr  X:84,408,762...84,541,157
Ensembl chr  X:84,408,895...84,517,827 		JBrowse link
G DLL1 delta like canonical Notch ligand 1 involved_in ISO (MGI:3848562|PMID:19389377) UniProt PMID:19389377 MGI:3848562 NCBI chr12:72,265,078...72,272,347
Ensembl chr12:72,265,682...72,272,348 		JBrowse link
G DPYSL2 dihydropyrimidinase like 2 ISO RGD PMID:8946055 RGD:2316253 NCBI chr25:30,900,347...31,038,256
Ensembl chr25:30,903,253...31,038,144 		JBrowse link
G EED embryonic ectoderm development ISO RGD PMID:20515739 RGD:9491842 NCBI chr21:13,260,062...13,289,511
Ensembl chr21:13,260,002...13,289,337 		JBrowse link
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:21935678), (PMID:23717624), (PMID:31666661) MGI PMID:21935678 PMID:23717624 PMID:31666661 NCBI chr 1:251,985...322,081
Ensembl chr 1:252,103...322,718 		JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17020410) Ensembl
MGI		 PMID:17020410 GO_REF:0000107 NCBI chr 1:110,173,781...110,191,612
Ensembl chr 1:110,173,715...110,190,125 		JBrowse link
G FOXB1 forkhead box B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:24,822,137...24,825,833
Ensembl chr30:24,823,815...24,824,792 		JBrowse link
G FUZ fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (PMID:19877275) MGI PMID:19877275 NCBI chr 1:106,742,381...106,752,543
Ensembl chr 1:106,747,860...106,805,699 		JBrowse link
G GLRA2 glycine receptor alpha 2 ISO RGD PMID:12124753 RGD:708602 NCBI chr  X:10,859,699...11,033,386
Ensembl chr  X:10,860,476...11,033,287 		JBrowse link
G GRIA1 glutamate ionotropic receptor AMPA type subunit 1 ISO RGD PMID:19446017 RGD:2325980 NCBI chr 4:55,801,269...56,103,383
Ensembl chr 4:55,803,296...56,103,669 		JBrowse link
G GRIN2A glutamate ionotropic receptor NMDA type subunit 2A ISO RGD PMID:19446017 RGD:2325980 NCBI chr 6:32,132,070...32,678,319
Ensembl chr 6:32,303,121...32,668,960 		JBrowse link
G KCNH2 potassium voltage-gated channel subfamily H member 2 ISO RGD PMID:15365256 RGD:7243961 NCBI chr16:15,009,031...15,041,786
Ensembl chr16:15,009,031...15,041,504 		JBrowse link
G LHX1 LIM homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:36,760,890...36,768,345
Ensembl chr 9:36,761,826...36,768,164 		JBrowse link
G LOXL3 lysyl oxidase like 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:48,590,996...48,610,264
Ensembl chr17:48,591,768...48,610,392 		JBrowse link
G MECP2 methyl-CpG binding protein 2 ISO cervical spinal cord RGD PMID:12605461 RGD:12790706 NCBI chr  X:121,866,721...121,876,088
Ensembl chr  X:121,873,218...121,932,994 		JBrowse link
G MED12 mediator complex subunit 12 acts_upstream_of_or_within ISO (PMID:20589884) MGI PMID:20589884 NCBI chr  X:55,487,629...55,508,941
Ensembl chr  X:55,482,013...55,509,992 		JBrowse link
G MPST mercaptopyruvate sulfurtransferase ISO RGD PMID:9078435 RGD:9686095 NCBI chr10:27,465,007...27,469,788
Ensembl chr10:27,443,865...27,469,554 		JBrowse link
G MTOR mechanistic target of rapamycin kinase ISO RGD PMID:23681769 RGD:10040966 NCBI chr 2:84,818,893...84,939,283
Ensembl chr 2:84,787,708...84,939,114 		JBrowse link
G NEFH neurofilament heavy chain ISO RGD PMID:2108255 RGD:9698442 NCBI chr26:22,726,523...22,735,129
Ensembl chr26:22,726,526...22,735,125 		JBrowse link
G NEFL neurofilament light chain ISO RGD PMID:2108255 RGD:9698442 NCBI chr25:32,463,361...32,468,965
Ensembl chr25:32,463,452...32,467,224 		JBrowse link
G NEFM neurofilament medium chain ISO RGD PMID:2108255 RGD:9698442 NCBI chr25:32,493,517...32,498,615
Ensembl chr25:32,493,675...32,498,570 		JBrowse link
G NEUROG3 neurogenin 3 ISO RGD PMID:9130143 RGD:633362 NCBI chr 4:20,654,824...20,657,816
Ensembl chr 4:20,656,791...20,657,438 		JBrowse link
G NF1 neurofibromin 1 acts_upstream_of_or_within ISO (PMID:16906226) MGI PMID:16906226 NCBI chr 9:41,467,460...41,679,388
Ensembl chr 9:41,469,416...41,679,382 		JBrowse link
G NFIX nuclear factor I X involved_in ISO (PMID:17353270) MGI PMID:17353270 NCBI chr20:49,117,087...49,187,023
Ensembl chr20:49,117,943...49,214,788 		JBrowse link
G NOG noggin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16712836) Ensembl
MGI		 PMID:16712836 GO_REF:0000107 NCBI chr 9:31,453,604...31,456,060 JBrowse link
G NOVA1 NOVA alternative splicing regulator 1 ISO RGD PMID:12124753 RGD:708602 NCBI chr 8:6,133,608...6,281,508
Ensembl chr 8:6,135,679...6,281,384 		JBrowse link
G PAX6 paired box 6 ISO RGD PMID:20195794 RGD:2325285
G PHGDH phosphoglycerate dehydrogenase acts_upstream_of_or_within ISO (PMID:19114063) MGI PMID:19114063 NCBI chr17:56,806,912...56,833,765 JBrowse link
G PKD1 polycystin 1, transient receptor potential channel interacting involved_in ISO (PMID:11891195) UniProt PMID:11891195 NCBI chr 6:38,811,051...38,865,503
Ensembl chr 6:38,837,964...38,865,503 		JBrowse link
G PKD2 polycystin 2, transient receptor potential cation channel involved_in IEA Ensembl GO_REF:0000107 NCBI chr32:11,383,441...11,437,603
Ensembl chr32:11,383,424...11,435,438 		JBrowse link
G PLXDC1 plexin domain containing 1 ISO RGD PMID:20411127 RGD:2325872 NCBI chr 9:23,210,930...23,272,242
Ensembl chr 9:23,210,925...23,270,995 		JBrowse link
G PTBP2 polypyrimidine tract binding protein 2 ISO RGD PMID:12124753 RGD:708602 NCBI chr 6:52,870,944...52,948,673
Ensembl chr 6:52,872,310...52,949,025 		JBrowse link
G PTN pleiotrophin ISO RGD PMID:8453763 RGD:9831456 NCBI chr16:11,283,078...11,382,820
Ensembl chr16:11,283,077...11,382,814 		JBrowse link
G PTPRS protein tyrosine phosphatase receptor type S involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15842738) Ensembl
MGI		 PMID:15842738 GO_REF:0000107 NCBI chr20:54,575,853...54,672,141
Ensembl chr20:54,575,895...54,672,068 		JBrowse link
G RAPGEF3 Rap guanine nucleotide exchange factor 3 ISO RGD PMID:18583150 RGD:9835386 NCBI chr27:6,993,452...7,030,372
Ensembl chr27:6,993,452...7,017,316 		JBrowse link
G RAPGEF4 Rap guanine nucleotide exchange factor 4 ISO RGD PMID:18583150 RGD:9835386 NCBI chr36:17,087,488...17,323,504
Ensembl chr36:17,087,488...17,323,220 		JBrowse link
G RNF2 ring finger protein 2 ISO RGD PMID:20515739 RGD:9491842 NCBI chr 7:18,240,672...18,283,091
Ensembl chr 7:18,236,115...18,281,387 		JBrowse link
G ROBO1 roundabout guidance receptor 1 ISO RGD PMID:10102268 RGD:68763 NCBI chr31:8,082,363...8,594,623
Ensembl chr31:7,626,126...8,593,728 		JBrowse link
G ROBO2 roundabout guidance receptor 2 ISO RGD PMID:10102268 RGD:68763 NCBI chr31:9,415,390...11,047,710
Ensembl chr31:9,419,026...11,022,392 		JBrowse link
G SLIT1 slit guidance ligand 1 ISO RGD PMID:10102268 RGD:68763 NCBI chr28:10,351,758...10,519,322
Ensembl chr28:10,351,821...10,519,313 		JBrowse link
G SLIT2 slit guidance ligand 2 ISO RGD PMID:10102268 RGD:68763 NCBI chr 3:88,964,707...89,311,817
Ensembl chr 3:88,966,232...89,312,955 		JBrowse link
G SLIT3 slit guidance ligand 3 ISO RGD PMID:10102268 RGD:68763 NCBI chr 4:42,506,680...43,099,053
Ensembl chr 4:42,508,426...43,094,714 		JBrowse link
G SOX11 SRY-box transcription factor 11 involved_in IEA Ensembl GO_REF:0000107
G SOX12 SRY-box transcription factor 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:20,509,931...20,515,013
Ensembl chr24:20,513,567...20,514,532 		JBrowse link
G SOX4 SRY-box transcription factor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr35:20,098,783...20,101,357
Ensembl chr35:20,099,773...20,101,154 		JBrowse link
G SRD5A1 steroid 5 alpha-reductase 1 ISO RGD PMID:8770891 RGD:4892048 NCBI chr34:7,118,814...7,144,828
Ensembl chr34:7,118,814...7,144,828 		JBrowse link
G SUZ12 SUZ12 polycomb repressive complex 2 subunit ISO RGD PMID:20515739 RGD:9491842 NCBI chr 9:40,992,797...41,038,729
Ensembl chr 9:40,994,825...41,038,645 		JBrowse link
G VIT vitrin involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:29,142,924...29,259,800
Ensembl chr17:29,143,069...29,243,406 		JBrowse link
G ZIC1 Zic family member 1 involved_in ISO (MGI:2178698|PMID:11944941) UniProt PMID:11944941 MGI:2178698
G ZPR1 ZPR1 zinc finger involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:16,778,803...16,787,493
Ensembl chr 5:16,778,832...16,787,105 		JBrowse link
cell differentiation in spinal cord term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBX1 developing brain homeobox 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:42,207,205...42,214,954
Ensembl chr21:42,208,346...42,212,415 		JBrowse link
G NOTCH1 notch receptor 1 ISO RGD PMID:20195794 RGD:2325285 NCBI chr 9:48,975,972...49,018,985
Ensembl chr 9:48,974,757...49,017,277 		JBrowse link
commissural neuron differentiation in spinal cord term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DRAXIN dorsal inhibitory axon guidance protein involved_in IEA UniProt
TreeGrafter
Ensembl		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:84,515,881...84,525,797
Ensembl chr 2:84,515,811...84,526,387 		JBrowse link
dorsal spinal cord development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DAAM2 dishevelled associated activator of morphogenesis 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:8,686,653...8,801,903
Ensembl chr12:8,748,655...8,799,059 		JBrowse link
G DRAXIN dorsal inhibitory axon guidance protein involved_in IEA UniProt
TreeGrafter
Ensembl		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:84,515,881...84,525,797
Ensembl chr 2:84,515,811...84,526,387 		JBrowse link
G DRGX dorsal root ganglia homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16978876) Ensembl
MGI		 PMID:16978876 GO_REF:0000107 NCBI chr28:1,281,868...1,316,624
Ensembl chr28:1,281,864...1,314,932 		JBrowse link
G GDNF glial cell derived neurotrophic factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:70,966,694...70,991,860
Ensembl chr 4:70,971,432...70,989,714 		JBrowse link
G HOXB8 homeobox B8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10559485), (PMID:18430798) Ensembl
MGI		 PMID:10559485 PMID:18430798 GO_REF:0000107 NCBI chr 9:24,874,893...24,888,981
Ensembl chr 9:24,874,899...24,877,504 		JBrowse link
G PBX3 PBX homeobox 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18155191) Ensembl
MGI		 PMID:18155191 GO_REF:0000107 NCBI chr 9:57,198,531...57,429,820
Ensembl chr 9:57,199,812...57,429,811 		JBrowse link
G UNCX UNC homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10804168)
(PMID:10804169)		 Ensembl
MGI		 PMID:10804168 PMID:10804169 GO_REF:0000107 NCBI chr 6:15,652,600...15,657,016
Ensembl chr 6:15,653,576...15,657,927 		JBrowse link
medial motor column neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LHX3 LIM homeobox 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9865699) Ensembl
MGI		 PMID:9865699 GO_REF:0000107 NCBI chr 9:49,248,555...49,254,128
Ensembl chr 9:49,248,621...49,254,118 		JBrowse link
G LHX4 LIM homeobox 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9865699) Ensembl
MGI		 PMID:9865699 GO_REF:0000107 NCBI chr 7:13,779,574...13,825,650
Ensembl chr 7:13,779,774...13,821,317 		JBrowse link
negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RFX4 regulatory factor X4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:31,993,339...32,155,896
Ensembl chr10:31,994,594...32,155,500 		JBrowse link
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15215207) Ensembl
MGI		 PMID:15215207 GO_REF:0000107 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15215207) Ensembl
MGI		 PMID:15215207 GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132 		JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19684112) Ensembl
MGI		 PMID:19684112 GO_REF:0000107 NCBI chr28:14,992,989...15,115,499
Ensembl chr28:14,992,618...15,112,389 		JBrowse link
smoothened signaling pathway involved in ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15215207) Ensembl
MGI		 PMID:15215207 GO_REF:0000107 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15215207) Ensembl
MGI		 PMID:15215207 GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132 		JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19684112) Ensembl
MGI		 PMID:19684112 GO_REF:0000107 NCBI chr28:14,992,989...15,115,499
Ensembl chr28:14,992,618...15,112,389 		JBrowse link
somatic motor neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLN8 CLN8 transmembrane ER and ERGIC protein acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chr37:30,863,098...30,885,831
Ensembl chr37:30,867,479...30,884,895 		JBrowse link
G PHOX2A paired like homeobox 2A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16319924) Ensembl
MGI		 PMID:16319924 GO_REF:0000107 NCBI chr21:25,895,628...25,900,338
Ensembl chr21:25,892,321...25,900,351 		JBrowse link
G TCTN1 tectonic family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16357211) Ensembl
MGI		 PMID:16357211 GO_REF:0000107 NCBI chr26:8,411,429...8,444,640
Ensembl chr26:8,407,105...8,437,027 		JBrowse link
spinal cord anterior/posterior patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GDF11 growth differentiation factor 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16790475) Ensembl
MGI		 PMID:16790475 GO_REF:0000107 NCBI chr10:142,039...152,537
Ensembl chr10:145,036...148,373 		JBrowse link
spinal cord association neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16715081) Ensembl
MGI		 PMID:16715081 GO_REF:0000107 NCBI chr15:41,694,021...41,696,933
Ensembl chr15:41,694,269...41,695,391 		JBrowse link
G GDF7 growth differentiation factor 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10693795) Ensembl
MGI		 PMID:10693795 GO_REF:0000107 NCBI chr17:15,627,739...15,636,513 JBrowse link
G GSX1 GS homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16715081) Ensembl
MGI		 PMID:16715081 GO_REF:0000107 NCBI chr25:11,853,483...11,855,169
Ensembl chr25:11,853,462...11,855,445 		JBrowse link
G GSX2 GS homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16715081) Ensembl
MGI		 PMID:16715081 GO_REF:0000107 NCBI chr13:46,640,172...46,642,405
Ensembl chr13:46,640,172...46,641,546 		JBrowse link
G LHX1 LIM homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:36,760,890...36,768,345
Ensembl chr 9:36,761,826...36,768,164 		JBrowse link
G LHX3 LIM homeobox 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19323994) Ensembl
MGI		 PMID:19323994 GO_REF:0000107 NCBI chr 9:49,248,555...49,254,128
Ensembl chr 9:49,248,621...49,254,118 		JBrowse link
G LHX5 LIM homeobox 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:10,776,991...10,785,820
Ensembl chr26:10,777,242...10,785,815 		JBrowse link
G LMO4 LIM domain only 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19323994) Ensembl
MGI		 PMID:19323994 GO_REF:0000107 NCBI chr 6:60,892,478...60,909,910
Ensembl chr 6:60,727,270...60,941,058 		JBrowse link
G MDGA1 MAM domain containing glycosylphosphatidylinositol anchor 1 involved_in ISO PMID:15019943 HGNC-UCL PMID:15019943 RGD:8554528 NCBI chr12:6,655,586...6,716,619
Ensembl chr12:6,659,910...6,686,760 		JBrowse link
G PAX3 paired box 3 acts_upstream_of_or_within ISO (PMID:9858722) MGI PMID:9858722 NCBI chr37:28,346,476...28,443,648
Ensembl chr37:28,346,563...28,444,561 		JBrowse link
G PAX7 paired box 7 acts_upstream_of_or_within ISO (PMID:9858722) MGI PMID:9858722 NCBI chr 2:79,813,835...79,952,490
Ensembl chr 2:79,815,748...79,915,003 		JBrowse link
G TAL1 TAL bHLH transcription factor 1, erythroid differentiation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19323994) Ensembl
MGI		 PMID:19323994 GO_REF:0000107 NCBI chr15:13,446,752...13,462,038
Ensembl chr15:13,449,481...13,462,047 		JBrowse link
G WNT1 Wnt family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11877374) Ensembl
MGI		 PMID:11877374 GO_REF:0000107 NCBI chr27:5,588,151...5,592,254
Ensembl chr27:5,574,940...5,592,060 		JBrowse link
G WNT3A Wnt family member 3A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11877374) Ensembl
MGI		 PMID:11877374 GO_REF:0000107 NCBI chr14:864,393...899,698
Ensembl chr14:863,424...896,412 		JBrowse link
spinal cord dorsal/ventral patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRD chordin involved_in IEA Ensembl GO_REF:0000107 NCBI chr34:17,255,770...17,264,776
Ensembl chr34:17,255,562...17,271,713 		JBrowse link
G FUZ fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (PMID:21761479) MGI PMID:21761479 NCBI chr 1:106,742,381...106,752,543
Ensembl chr 1:106,747,860...106,805,699 		JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16364285)
(PMID:15215207)
(PMID:11748151)		 Ensembl
MGI		 PMID:11748151 PMID:15215207 PMID:16364285 GO_REF:0000107 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15215207)
(PMID:16364285)		 Ensembl
MGI		 PMID:15215207 PMID:16364285 GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132 		JBrowse link
G IFT122 intraflagellar transport 122 involved_in ISO (MGI:4888042|PMID:21209331) BHF-UCL PMID:21209331 MGI:4888042 NCBI chr20:5,644,002...5,716,702
Ensembl chr20:5,644,089...5,715,906 		JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:21761479) MGI PMID:21761479 NCBI chr25:17,414,965...17,551,405
Ensembl chr25:17,414,965...17,551,266 		JBrowse link
G INTU inturned planar cell polarity protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21761479) Ensembl
MGI		 PMID:21761479 GO_REF:0000107 NCBI chr19:13,193,252...13,276,593
Ensembl chr19:13,164,245...13,276,496 		JBrowse link
G RAB23 RAB23, member RAS oncogene family acts_upstream_of_or_within ISO (PMID:16364285)
(PMID:15755804), (PMID:16364285)
(PMID:14603322)		 MGI PMID:14603322 PMID:15755804 PMID:16364285 NCBI chr12:24,388,530...24,438,956
Ensembl chr12:24,387,643...24,421,869 		JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in		 ISO
IEA		 PMID:9230312
(PMID:11748151)		 MGI
Ensembl		 PMID:9230312 PMID:11748151 GO_REF:0000107 RGD:8553789 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903 		JBrowse link
G SMO smoothened, frizzled class receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:7,518,871...7,527,703
Ensembl chr14:7,518,856...7,528,033 		JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16459298) Ensembl
MGI		 PMID:16459298 GO_REF:0000107 NCBI chr28:14,992,989...15,115,499
Ensembl chr28:14,992,618...15,112,389 		JBrowse link
spinal cord motor neuron cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOXC10 homeobox C10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18065432) Ensembl
MGI		 PMID:18065432 GO_REF:0000107 NCBI chr27:1,272,272...1,277,411
Ensembl chr27:1,273,131...1,323,370 		JBrowse link
G HOXD10 homeobox D10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18065432) Ensembl
MGI		 PMID:18065432 GO_REF:0000107 NCBI chr36:19,924,352...19,927,706
Ensembl chr36:19,916,175...19,927,724 		JBrowse link
G ISL1 ISL LIM homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19666821) Ensembl
MGI		 PMID:19666821 GO_REF:0000107 NCBI chr 4:63,638,009...63,648,492
Ensembl chr 4:63,637,443...63,648,183 		JBrowse link
G ISL2 ISL LIM homeobox 2 acts_upstream_of_or_within ISO (PMID:19666821) MGI PMID:19666821
G LHX3 LIM homeobox 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19666821) Ensembl
MGI		 PMID:19666821 GO_REF:0000107 NCBI chr 9:49,248,555...49,254,128
Ensembl chr 9:49,248,621...49,254,118 		JBrowse link
G LMO4 LIM domain only 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:60,892,478...60,909,910
Ensembl chr 6:60,727,270...60,941,058 		JBrowse link
G MNX1 motor neuron and pancreas homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10482234) InterPro
TreeGrafter
MGI		 PMID:10482234 GO_REF:0000002 GO_REF:0000118 NCBI chr16:19,509,038...19,514,378
Ensembl chr16:19,499,582...19,512,836 		JBrowse link
G OLIG3 oligodendrocyte transcription factor 3 acts_upstream_of_or_within ISO (PMID:15769945) MGI PMID:15769945 NCBI chr 1:29,919,043...29,921,713
Ensembl chr 1:29,920,190...29,921,008 		JBrowse link
spinal cord motor neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABT1 activator of basal transcription 1 acts_upstream_of_or_within ISO (PMID:19299493) MGI PMID:19299493 NCBI chr35:24,357,502...24,360,731
Ensembl chr35:24,357,460...24,359,318 		JBrowse link
G CACNA1A calcium voltage-gated channel subunit alpha1 A acts_upstream_of_or_within ISO (PMID:17156092) MGI PMID:17156092 NCBI chr20:48,747,087...49,036,627
Ensembl chr20:48,821,025...49,036,032 		JBrowse link
G CLN8 CLN8 transmembrane ER and ERGIC protein acts_upstream_of_or_within ISO (PMID:2061715) MGI PMID:2061715 NCBI chr37:30,863,098...30,885,831
Ensembl chr37:30,867,479...30,884,895 		JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:21338882) MGI PMID:21338882 NCBI chr 8:63,970,245...64,029,438
Ensembl chr 8:63,972,027...64,019,879 		JBrowse link
G DYNC2H1 dynein cytoplasmic 2 heavy chain 1 acts_upstream_of_or_within ISO (PMID:21552265) MGI PMID:21552265 NCBI chr 5:28,566,604...28,727,416
Ensembl chr 5:28,388,664...28,727,334 		JBrowse link
G GBX1 gastrulation brain homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23418536) Ensembl
MGI		 PMID:23418536 GO_REF:0000107 NCBI chr16:15,195,705...15,213,425 JBrowse link
G GDPD5 glycerophosphodiester phosphodiesterase domain containing 5 acts_upstream_of_or_within ISO (PMID:21943603) MGI PMID:21943603 NCBI chr21:23,070,875...23,157,078
Ensembl chr21:23,070,964...23,156,532 		JBrowse link
G GIGYF2 GRB10 interacting GYF protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19744960) Ensembl
MGI		 PMID:19744960 GO_REF:0000107 NCBI chr25:44,317,540...44,453,761
Ensembl chr25:44,317,517...44,452,064 		JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21552265) Ensembl
MGI		 PMID:21552265 GO_REF:0000107 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21552265) Ensembl
MGI		 PMID:21552265 GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132 		JBrowse link
G IFT172 intraflagellar transport 172 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21552265) Ensembl
MGI		 PMID:21552265 GO_REF:0000107 NCBI chr17:21,389,462...21,426,970
Ensembl chr17:21,389,482...21,426,796 		JBrowse link
G IGHMBP2 immunoglobulin mu DNA binding protein 2 acts_upstream_of_or_within ISO (PMID:19299493) MGI PMID:19299493 NCBI chr18:49,063,748...49,090,625
Ensembl chr18:49,064,609...49,091,453 		JBrowse link
G ISL1 ISL LIM homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8565076) Ensembl
MGI		 PMID:8565076 GO_REF:0000107 NCBI chr 4:63,638,009...63,648,492
Ensembl chr 4:63,637,443...63,648,183 		JBrowse link
G LBX1 ladybird homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15769945) Ensembl
MGI		 PMID:15769945 GO_REF:0000107 NCBI chr28:13,872,846...13,875,521
Ensembl chr28:13,873,727...13,875,486 		JBrowse link
G LMO4 LIM domain only 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19666821) Ensembl
MGI		 PMID:19666821 GO_REF:0000107 NCBI chr 6:60,892,478...60,909,910
Ensembl chr 6:60,727,270...60,941,058 		JBrowse link
G MDGA2 MAM domain containing glycosylphosphatidylinositol anchor 2 involved_in ISO PMID:15019943 HGNC-UCL PMID:15019943 RGD:8554528 NCBI chr 8:23,827,284...24,608,003
Ensembl chr 8:23,832,475...24,607,866 		JBrowse link
G MIR17 microRNA mir-17 acts_upstream_of_or_within ISO (PMID:21338882) MGI PMID:21338882 NCBI chr22:42,478,013...42,478,071
Ensembl chr22:42,478,000...42,478,083 		JBrowse link
G MIR18A microRNA mir-18a acts_upstream_of_or_within ISO (PMID:21338882) MGI PMID:21338882 NCBI chr22:42,478,138...42,478,229
Ensembl chr22:42,478,138...42,478,229 		JBrowse link
G MIR19A microRNA mir-19a acts_upstream_of_or_within ISO (PMID:21338882) MGI PMID:21338882 NCBI chr22:42,478,298...42,478,355
Ensembl chr22:42,478,285...42,478,366 		JBrowse link
G MIR19B-1 microRNA mir-19b-1 acts_upstream_of_or_within ISO (PMID:21741442) MGI PMID:21741442 NCBI chr22:42,478,598...42,478,656 JBrowse link
G MIR20A microRNA mir-20a acts_upstream_of_or_within ISO (PMID:21338882) MGI PMID:21338882 NCBI chr22:42,478,462...42,478,520
Ensembl chr22:42,478,462...42,478,520 		JBrowse link
G MIR92A-1 microRNA mir-92a-1 acts_upstream_of_or_within ISO (PMID:21338882) MGI PMID:21338882 NCBI chr22:42,478,714...42,478,772 JBrowse link
G NFE2L1 NFE2 like bZIP transcription factor 1 acts_upstream_of_or_within ISO (PMID:21554501) MGI PMID:21554501 NCBI chr 9:24,344,697...24,356,918
Ensembl chr 9:24,346,585...24,362,646 		JBrowse link
G NKX2-2 NK2 homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10217145) Ensembl
MGI		 PMID:10217145 GO_REF:0000107 NCBI chr24:1,933,176...1,935,875
Ensembl chr24:1,925,013...1,935,874 		JBrowse link
G OLIG2 oligodendrocyte transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21338882) Ensembl
MGI		 PMID:21338882 GO_REF:0000107 NCBI chr31:27,674,112...27,677,521
Ensembl chr31:27,674,107...27,676,822 		JBrowse link
G OLIG3 oligodendrocyte transcription factor 3 acts_upstream_of_or_within ISO (PMID:15674731)
(PMID:15769945)		 MGI PMID:15674731 PMID:15769945 NCBI chr 1:29,919,043...29,921,713
Ensembl chr 1:29,920,190...29,921,008 		JBrowse link
G PTCH1 patched 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21552265) Ensembl
MGI		 PMID:21552265 GO_REF:0000107 NCBI chr 1:71,246,750...71,309,036
Ensembl chr 1:71,238,195...71,305,662 		JBrowse link
G SCYL1 SCY1 like pseudokinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29437892) Ensembl
MGI		 PMID:29437892 GO_REF:0000107 NCBI chr18:51,667,647...51,680,904
Ensembl chr18:51,667,790...51,681,090 		JBrowse link
G SCYL3 SCY1 like pseudokinase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29437892) Ensembl
MGI		 PMID:29437892 GO_REF:0000107 NCBI chr 7:28,751,604...28,796,042
Ensembl chr 7:28,751,707...28,795,756 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21552265) Ensembl
MGI		 PMID:21552265 GO_REF:0000107 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903 		JBrowse link
spinal cord oligodendrocyte cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18287202) Ensembl
MGI		 PMID:18287202 GO_REF:0000107 NCBI chr15:41,694,021...41,696,933
Ensembl chr15:41,694,269...41,695,391 		JBrowse link
G NKX2-2 NK2 homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18287202)
(PMID:11526078)		 Ensembl
MGI		 PMID:11526078 PMID:18287202 GO_REF:0000107 NCBI chr24:1,933,176...1,935,875
Ensembl chr24:1,925,013...1,935,874 		JBrowse link
G OLIG2 oligodendrocyte transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18287202) Ensembl
MGI		 PMID:18287202 GO_REF:0000107 NCBI chr31:27,674,112...27,677,521
Ensembl chr31:27,674,107...27,676,822 		JBrowse link
G SOX13 SRY-box transcription factor 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr38:702,974...721,340
Ensembl chr38:523,481...720,195 		JBrowse link
G SOX6 SRY-box transcription factor 6 involved_in ISO (MGI:5766856|PMID:26525805) UniProt PMID:26525805 MGI:5766856 NCBI chr21:38,737,072...39,320,257
Ensembl chr21:38,737,247...39,216,549 		JBrowse link
spinal cord oligodendrocyte cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18287202) Ensembl
MGI		 PMID:18287202 GO_REF:0000107 NCBI chr15:41,694,021...41,696,933
Ensembl chr15:41,694,269...41,695,391 		JBrowse link
G NKX2-2 NK2 homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18287202) Ensembl
MGI		 PMID:18287202 GO_REF:0000107 NCBI chr24:1,933,176...1,935,875
Ensembl chr24:1,925,013...1,935,874 		JBrowse link
G OLIG2 oligodendrocyte transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18287202) Ensembl
MGI		 PMID:18287202 GO_REF:0000107 NCBI chr31:27,674,112...27,677,521
Ensembl chr31:27,674,107...27,676,822 		JBrowse link
spinal cord patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RELN reelin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16580148) RGD
MGI
Ensembl		 PMID:14648677 PMID:16580148 GO_REF:0000107 RGD:2317803 NCBI chr18:16,275,822...16,773,875
Ensembl chr18:16,275,837...16,773,875 		JBrowse link
spinal cord ventral commissure morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADARB1 adenosine deaminase RNA specific B1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20826656) Ensembl
MGI		 PMID:20826656 GO_REF:0000107 NCBI chr31:38,715,529...38,799,353
Ensembl chr31:38,678,184...38,796,521 		JBrowse link
G DCC DCC netrin 1 receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9126737) Ensembl
MGI		 PMID:9126737 GO_REF:0000107 NCBI chr 1:21,788,833...22,494,849
Ensembl chr 1:21,793,328...22,494,967 		JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10409510) Ensembl
MGI		 PMID:10409510 GO_REF:0000107 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658 		JBrowse link
ventral spinal cord development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DAB1 DAB adaptor protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:51,397,837...52,505,513
Ensembl chr 5:52,231,141...52,502,336 		JBrowse link
G DCTN1 dynactin subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:48,728,096...48,759,187
Ensembl chr17:48,728,270...48,759,147 		JBrowse link
G FOXP1 forkhead box P1 involved_in ISO (MGI:4849611|PMID:20711475) UniProt PMID:20711475 MGI:4849611 NCBI chr20:20,438,631...21,020,516
Ensembl chr20:20,788,433...21,016,397 		JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11748151) Ensembl
MGI		 PMID:11748151 GO_REF:0000107 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658 		JBrowse link
G LHX1 LIM homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:36,760,890...36,768,345
Ensembl chr 9:36,761,826...36,768,164 		JBrowse link
G LRP8 LDL receptor related protein 8 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:55,604,878...55,684,666
Ensembl chr 5:55,604,878...55,699,736 		JBrowse link
G PAX6 paired box 6 involved_in IEA Ensembl GO_REF:0000107
G RELN reelin involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:16,275,822...16,773,875
Ensembl chr18:16,275,837...16,773,875 		JBrowse link
G VLDLR very low density lipoprotein receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:91,242,010...91,277,030
Ensembl chr 1:91,241,509...91,272,495 		JBrowse link
G VSTM5 V-set and transmembrane domain containing 5 involved_in ISO (MGI:5751349|PMID:25826454) UniProt PMID:25826454 MGI:5751349 NCBI chr21:6,928,557...6,960,603
Ensembl chr21:6,928,126...6,960,202 		JBrowse link
ventral spinal cord interneuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXN4 forkhead box N4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:17,730,638...17,757,173
Ensembl chr26:17,728,878...17,755,602 		JBrowse link
G GATA2 GATA binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10934027) Ensembl
MGI		 PMID:10934027 GO_REF:0000107 NCBI chr20:2,472,251...2,488,380
Ensembl chr20:2,473,912...2,480,991 		JBrowse link
G LMO4 LIM domain only 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19666821) Ensembl
MGI		 PMID:19666821 GO_REF:0000107 NCBI chr 6:60,892,478...60,909,910
Ensembl chr 6:60,727,270...60,941,058 		JBrowse link
ventral spinal cord interneuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:41,694,021...41,696,933
Ensembl chr15:41,694,269...41,695,391 		JBrowse link
G DLL4 delta like canonical Notch ligand 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:8,059,463...8,068,742
Ensembl chr30:8,059,512...8,067,940 		JBrowse link
G FOXN4 forkhead box N4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:17,730,638...17,757,173
Ensembl chr26:17,728,878...17,755,602 		JBrowse link
ventral spinal cord interneuron fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NKX2-2 NK2 homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10217145) Ensembl
MGI		 PMID:10217145 GO_REF:0000107 NCBI chr24:1,933,176...1,935,875
Ensembl chr24:1,925,013...1,935,874 		JBrowse link
ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBX1 developing brain homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11239429) Ensembl
MGI		 PMID:11239429 GO_REF:0000107 NCBI chr21:42,207,205...42,214,954
Ensembl chr21:42,208,346...42,212,415 		JBrowse link
G DMRT3 doublesex and mab-3 related transcription factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22932389) Ensembl
MGI		 PMID:22932389 GO_REF:0000107 NCBI chr 1:89,798,215...89,813,140
Ensembl chr 1:89,798,100...89,812,328 		JBrowse link
G LHX3 LIM homeobox 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19666821) Ensembl
MGI		 PMID:19666821 GO_REF:0000107 NCBI chr 9:49,248,555...49,254,128
Ensembl chr 9:49,248,621...49,254,118 		JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within ISO PMID:9230312 MGI PMID:9230312 RGD:8553789 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903 		JBrowse link
G SOX1 SRY-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:20844123) MGI PMID:20844123 NCBI chr22:59,902,113...59,903,820 JBrowse link
visceral motor neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ISL1 ISL LIM homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14766174) Ensembl
MGI		 PMID:14766174 GO_REF:0000107 NCBI chr 4:63,638,009...63,648,492
Ensembl chr 4:63,637,443...63,648,183 		JBrowse link
G ISL2 ISL LIM homeobox 2 acts_upstream_of_or_within ISO (PMID:14766174) MGI PMID:14766174
G TBX20 T-box transcription factor 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:46,891,706...46,946,899
Ensembl chr14:46,896,228...46,947,507 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17917
    developmental process 6831
      anatomical structure development 6414
        spinal cord development 141
          cell differentiation in spinal cord + 62
          central canal development 0
          dorsal spinal cord development + 21
          spinal cord patterning + 22
          spinal cord ventral commissure morphogenesis 3
          ventral spinal cord development + 56
Path 2
Term Annotations click to browse term
  biological_process 17917
    developmental process 6831
      anatomical structure development 6414
        multicellular organism development 5174
          system development 4502
            nervous system development 2788
              central nervous system development 1203
                spinal cord development 141
                  cell differentiation in spinal cord + 62
                  central canal development 0
                  dorsal spinal cord development + 21
                  spinal cord patterning + 22
                  spinal cord ventral commissure morphogenesis 3
                  ventral spinal cord development + 56
paths to the root