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ONTOLOGY REPORT - ANNOTATIONS


Term:spinal cord development
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Accession:GO:0021510 term browser browse the term
Definition:The process whose specific outcome is the progression of the spinal cord over time, from its formation to the mature structure. The spinal cord primarily conducts sensory and motor nerve impulses between the brain and the peripheral nervous tissues.


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spinal cord development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan IEP RGD PMID:18364019 RGD:2315810 NCBI chr 1:140,762,758...140,824,441
Ensembl chr 1:140,762,758...140,824,441
JBrowse link
G Actl6a actin-like 6A IEP RGD PMID:23677776 RGD:9587760 NCBI chr 2:119,112,776...119,128,870
Ensembl chr 2:119,112,513...119,129,751
JBrowse link
G Actl6b actin-like 6B IEP RGD PMID:23677776 RGD:9587760 NCBI chr12:22,194,595...22,211,107
Ensembl chr12:22,194,618...22,211,080
JBrowse link
G Ahi1 Abelson helper integration site 1 IEP RGD PMID:19819228 RGD:11537397 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
G Akap5 A-kinase anchoring protein 5 IEP RGD PMID:19535604 RGD:2313144 NCBI chr 6:99,356,509...99,361,909
Ensembl chr 6:99,356,509...99,361,909
JBrowse link
G Akt1 AKT serine/threonine kinase 1 IDA RGD PMID:23681769 RGD:10040966 NCBI chr 6:137,218,398...137,239,970
Ensembl chr 6:137,218,376...137,236,258
JBrowse link
G Bag3 BAG cochaperone 3 IEP RGD PMID:19415333 RGD:2325845 NCBI chr 1:199,941,258...199,965,191
Ensembl chr 1:199,941,161...199,965,191
JBrowse link
G Dcx doublecortin IEP RGD PMID:25487013 RGD:12904756 NCBI chr  X:115,098,675...115,175,515
Ensembl chr  X:115,098,675...115,175,299
JBrowse link
G Dll1 delta like canonical Notch ligand 1 IEA
ISO
ISS
GO_REF:0000107
(MGI:3848562|PMID:19389377)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:19389377 GO_REF:0000024, GO_REF:0000107, MGI:3848562 NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
JBrowse link
G Dpysl2 dihydropyrimidinase-like 2 IEP RGD PMID:8946055 RGD:2316253 NCBI chr15:43,475,640...43,581,725
Ensembl chr15:43,477,629...43,542,939
JBrowse link
G Eed embryonic ectoderm development IEP RGD PMID:20515739 RGD:9491842 NCBI chr 1:154,189,252...154,216,340
Ensembl chr 1:154,189,260...154,216,340
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO MGI:2183949 (MGI:3692802|PMID:17020410) RGD PMID:17020410 MGI:3692802 NCBI chr 1:80,293,574...80,307,334
Ensembl chr 1:80,293,566...80,307,344
JBrowse link
G Foxb1 forkhead box B1 ISO (PMID:11170346) RGD PMID:11170346 NCBI chr 8:75,992,751...75,995,371
Ensembl chr 8:75,992,755...75,995,371
JBrowse link
G Fuz fuzzy planar cell polarity protein ISO MGI:4346364 (MGI:4367921|PMID:19877275) RGD PMID:19877275 MGI:4367921 NCBI chr 1:100,891,832...100,896,811
Ensembl chr 1:100,891,866...100,896,807
JBrowse link
G Glra2 glycine receptor, alpha 2 IEP RGD PMID:12124753 RGD:708602 NCBI chr  X:30,612,894...30,832,078
Ensembl chr  X:30,612,903...30,831,483
JBrowse link
G Gria1 glutamate ionotropic receptor AMPA type subunit 1 IEP RGD PMID:19446017 RGD:2325980 NCBI chr10:42,441,723...42,760,200
Ensembl chr10:42,614,713...42,760,200
JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A IEP RGD PMID:19446017 RGD:2325980 NCBI chr10:5,707,806...6,123,568
Ensembl chr10:5,930,298...6,119,990
JBrowse link
G Kcnh2 potassium voltage-gated channel subfamily H member 2 IEP RGD PMID:15365256 RGD:7243961 NCBI chr 4:7,355,066...7,387,282
Ensembl chr 4:7,355,574...7,387,253
JBrowse link
G Lhx1 LIM homeobox 1 ISO (PMID:7909549) RGD PMID:7909549 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Loxl3 lysyl oxidase-like 3 ISO (MGI:5697239|PMID:26307084) RGD PMID:26307084 MGI:5697239 NCBI chr 4:113,866,782...113,883,713
Ensembl chr 4:113,866,804...113,883,477
JBrowse link
G Mecp2 methyl CpG binding protein 2 IEP cervical spinal cord RGD PMID:12605461 RGD:12790706 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233
JBrowse link
G Med12 mediator complex subunit 12 ISO MGI:4839485 (MGI:4839544|PMID:20589884) RGD PMID:20589884 MGI:4839544 NCBI chr  X:71,174,653...71,197,812
Ensembl chr  X:71,174,699...71,197,812
JBrowse link
G Mpst mercaptopyruvate sulfurtransferase IEP RGD PMID:9078435 RGD:9686095 NCBI chr 7:119,626,636...119,631,317
Ensembl chr 7:119,626,637...119,631,425
JBrowse link
G Mtor mechanistic target of rapamycin kinase IDA RGD PMID:23681769 RGD:10040966 NCBI chr 5:165,263,813...165,373,967
Ensembl chr 5:165,263,800...165,373,967
JBrowse link
G Nefh neurofilament heavy IEP RGD PMID:2108255 RGD:9698442 NCBI chr14:85,181,572...85,191,557
Ensembl chr14:85,181,572...85,191,557
JBrowse link
G Nefl neurofilament light IEP RGD PMID:2108255 RGD:9698442 NCBI chr15:44,799,378...44,803,251
Ensembl chr15:44,799,334...44,804,574
JBrowse link
G Nefm neurofilament medium IEP RGD PMID:2108255 RGD:9698442 NCBI chr15:44,855,307...44,860,604
Ensembl chr15:44,855,310...44,860,604
JBrowse link
G Neurog3 neurogenin 3 IEP RGD PMID:9130143 RGD:633362 NCBI chr20:31,761,419...31,762,893
Ensembl chr20:31,761,405...31,762,893
JBrowse link
G Nf1 neurofibromin 1 IEA
ISO
ISS
GO_REF:0000107
MGI:1857444 (MGI:3689139|PMID:16906226)
GO_REF:0000024
Ensembl
RGD
HGNC
PMID:16906226 GO_REF:0000024, GO_REF:0000107, MGI:3689139 NCBI chr10:66,732,460...66,928,706
Ensembl chr10:66,690,133...66,928,903
JBrowse link
G Nog noggin IEA
ISO
GO_REF:0000107
MGI:1862000 (MGI:3640733|PMID:16712836)
Ensembl
RGD
PMID:16712836 GO_REF:0000107, MGI:3640733 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Nova1 NOVA alternative splicing regulator 1 IEP RGD PMID:12124753 RGD:708602 NCBI chr 6:66,960,126...67,085,836
Ensembl chr 6:66,963,510...67,085,390
JBrowse link
G Npff neuropeptide FF-amide peptide precursor IEP RGD PMID:12619141 RGD:1299340 NCBI chr 7:144,127,084...144,127,873
Ensembl chr 7:144,127,085...144,127,873
JBrowse link
G Pax6 paired box 6 IEP RGD PMID:20195794 RGD:2325285 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Phgdh phosphoglycerate dehydrogenase ISO MGI:3769591 (MGI:3835979|PMID:19114063) RGD PMID:19114063 MGI:3835979 NCBI chr 2:200,484,245...200,513,564
Ensembl chr 2:200,484,246...200,513,564
JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting ISO (PMID:11891195) RGD PMID:11891195 NCBI chr10:13,914,057...13,962,008
Ensembl chr10:13,915,214...13,962,008
JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel ISO (PMID:11891195) RGD PMID:11891195 NCBI chr14:6,602,004...6,645,257
Ensembl chr14:6,602,004...6,645,257
JBrowse link
G Plxdc1 plexin domain containing 1 IEP RGD PMID:20411127 RGD:2325872 NCBI chr10:85,871,122...85,938,085
Ensembl chr10:85,871,122...85,938,085
JBrowse link
G Ptbp2 polypyrimidine tract binding protein 2 IEP RGD PMID:12124753 RGD:708602 NCBI chr 2:223,261,444...223,323,075
Ensembl chr 2:223,262,852...223,322,585
JBrowse link
G Ptn pleiotrophin IEP RGD PMID:8453763 RGD:9831456 NCBI chr 4:64,239,156...64,330,996
Ensembl chr 4:64,239,158...64,330,996
JBrowse link
G Ptprs protein tyrosine phosphatase, receptor type, S IEA
ISO
GO_REF:0000107
MGI:2158734 (MGI:3614607|PMID:15842738)
Ensembl
RGD
PMID:15842738 GO_REF:0000107, MGI:3614607 NCBI chr 9:10,585,360...10,646,205
Ensembl chr 9:10,603,813...10,645,939
JBrowse link
G Rapgef3 Rap guanine nucleotide exchange factor 3 IEP RGD PMID:18583150 RGD:9835386 NCBI chr 7:139,232,263...139,254,668
Ensembl chr 7:139,232,251...139,254,551
JBrowse link
G Rapgef4 Rap guanine nucleotide exchange factor 4 IEP RGD PMID:18583150 RGD:9835386 NCBI chr 3:58,632,338...58,925,127
Ensembl chr 3:58,632,476...58,924,038
JBrowse link
G Rnf2 ring finger protein 2 IEP RGD PMID:20515739 RGD:9491842 NCBI chr13:68,829,714...68,859,920
Ensembl chr13:68,830,620...68,858,809
JBrowse link
G Robo1 roundabout guidance receptor 1 IEP RGD PMID:10102268 RGD:68763 NCBI chr11:9,079,291...10,146,302
Ensembl chr11:9,642,365...10,143,317
JBrowse link
G Robo2 roundabout guidance receptor 2 IEP RGD PMID:10102268 RGD:68763 NCBI chr11:11,062,866...12,618,793
Ensembl chr11:11,062,790...11,585,765
JBrowse link
G Slit1 slit guidance ligand 1 IEP RGD PMID:10102268 RGD:68763 NCBI chr 1:260,843,481...260,992,366
Ensembl chr 1:260,843,483...260,992,366
JBrowse link
G Slit2 slit guidance ligand 2 IEP RGD PMID:10102268 RGD:68763 NCBI chr14:66,831,848...67,171,491
Ensembl chr14:66,831,848...67,170,361
JBrowse link
G Slit3 slit guidance ligand 3 IEP RGD PMID:10102268 RGD:68763 NCBI chr10:19,924,200...20,517,918
Ensembl chr10:20,320,878...20,518,518
JBrowse link
G Sox11 SRY-box transcription factor 11 ISS
ISO
GO_REF:0000024
(MGI:4838379|PMID:20646169)
UniProt
RGD
PMID:20646169 GO_REF:0000024, MGI:4838379 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983
JBrowse link
G Sox12 SRY-box transcription factor 12 ISS
ISO
GO_REF:0000024
(MGI:3803393|PMID:18505825)
UniProt
RGD
PMID:18505825 GO_REF:0000024, MGI:3803393 NCBI chr 3:147,864,374...147,865,393
Ensembl chr 3:147,864,374...147,865,393
JBrowse link
G Sox4 SRY-box transcription factor 4 ISO (MGI:4838379|PMID:20646169) RGD PMID:20646169 MGI:4838379 NCBI chr17:37,615,022...37,619,728 JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 IEP RGD PMID:8770891 RGD:4892048 NCBI chr 1:36,320,504...36,354,694
Ensembl chr 1:36,320,461...36,354,756
JBrowse link
G Suz12 SUZ12 polycomb repressive complex 2 subunit IEP RGD PMID:20515739 RGD:9491842 NCBI chr10:67,325,101...67,371,588
Ensembl chr10:67,325,347...67,369,668
JBrowse link
G Vit vitrin ISO (MGI:5812764|PMID:25331329) RGD PMID:25331329 MGI:5812764 NCBI chr 6:1,091,817...1,208,888
Ensembl chr 6:1,147,012...1,208,392
JBrowse link
G Zic1 Zic family member 1 ISO (MGI:2178698|PMID:11944941) RGD PMID:11944941 MGI:2178698 NCBI chr 8:98,733,715...98,738,960
Ensembl chr 8:98,734,295...98,738,446
JBrowse link
G Zpr1 ZPR1 zinc finger ISO (MGI:5424069|PMID:22422766) RGD PMID:22422766 MGI:5424069 NCBI chr 8:50,563,047...50,572,621
Ensembl chr 8:50,563,047...50,572,621
JBrowse link
BMP signaling pathway involved in spinal cord dorsal/ventral patterning term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin ISO
IEA
(PMID:11472837)
GO_REF:0000107
RGD
Ensembl
PMID:11472837 GO_REF:0000107 NCBI chr11:83,858,503...83,867,543
Ensembl chr11:83,858,503...83,867,203
JBrowse link
cell differentiation in spinal cord term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbx1 developing brain homeobox 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:104,969,218...104,973,648
Ensembl chr 1:104,969,218...104,973,648
JBrowse link
G Notch1 notch receptor 1 IEP RGD PMID:20195794 RGD:2325285 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
commissural neuron differentiation in spinal cord term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Draxin dorsal inhibitory axon guidance protein ISO
IBA
(MGI:3832346|PMID:19150847)
PMID:21873635
RGD PMID:19150847, PMID:21873635 MGI:3832346, RGD:13792537 NCBI chr 5:164,913,085...164,943,012
Ensembl chr 5:164,913,906...164,927,869
JBrowse link
dorsal spinal cord development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Daam2 dishevelled associated activator of morphogenesis 2 ISO (MGI:6114828|PMID:22227309) RGD PMID:22227309 MGI:6114828 NCBI chr 9:13,444,883...13,493,154
Ensembl chr 9:13,446,896...13,490,669
JBrowse link
G Draxin dorsal inhibitory axon guidance protein ISO
IBA
(MGI:3832346|PMID:19150847)
PMID:21873635
RGD PMID:19150847, PMID:21873635 MGI:3832346, RGD:13792537 NCBI chr 5:164,913,085...164,943,012
Ensembl chr 5:164,913,906...164,927,869
JBrowse link
G Drgx dorsal root ganglia homeobox IEA
ISO
GO_REF:0000107
MGI:2182636 (MGI:3694508|PMID:16978876)
Ensembl
RGD
PMID:16978876 GO_REF:0000107, MGI:3694508 NCBI chr16:8,823,872...8,853,430
Ensembl chr16:8,823,872...8,853,430
JBrowse link
G Gdnf glial cell derived neurotrophic factor IEA
ISO
GO_REF:0000107
(MGI:5440338|PMID:22998873)
Ensembl
RGD
PMID:22998873 GO_REF:0000107, MGI:5440338 NCBI chr 2:56,884,181...56,912,964
Ensembl chr 2:56,887,987...56,910,238
JBrowse link
G Hoxb8 homeo box B8 IEA
ISO
GO_REF:0000107
MGI:1934178 (MGI:1349283|PMID:10559485), (MGI:3789512|PMID:18430798)
Ensembl
RGD
PMID:10559485, PMID:18430798 GO_REF:0000107, MGI:1349283, MGI:3789512 NCBI chr10:84,131,484...84,133,874
Ensembl chr10:84,131,495...84,133,246
JBrowse link
G Pbx3 PBX homeobox 3 ISO MGI:3773271|MGI:3773272 (MGI:3772548|PMID:18155191) RGD PMID:18155191 MGI:3772548 NCBI chr 3:13,241,031...13,436,084
Ensembl chr 3:13,182,024...13,525,983
JBrowse link
G Rfx4 regulatory factor X4 ISO (MGI:2669568|PMID:12925582) RGD PMID:12925582 MGI:2669568 NCBI chr 7:25,831,358...25,909,976
Ensembl chr 7:25,808,419...25,907,849
JBrowse link
G Uncx UNC homeobox IEA
ISO
GO_REF:0000107
MGI:1859373|MGI:1928812 (MGI:1855901|PMID:10804169), (MGI:1855902|PMID:10804168)
Ensembl
RGD
PMID:10804168, PMID:10804169 GO_REF:0000107, MGI:1855901, MGI:1855902 NCBI chr12:17,182,158...17,186,679
Ensembl chr12:17,182,163...17,186,679
JBrowse link
medial motor column neuron differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx3 LIM homeobox 3 ISO MGI:101776 (MGI:1316601|PMID:9865699) RGD PMID:9865699 MGI:1316601 NCBI chr 3:3,653,861...3,662,509
Ensembl chr 3:3,654,755...3,661,810
JBrowse link
G Lhx4 LIM homeobox 4 ISO MGI:102673 (MGI:1316601|PMID:9865699) RGD PMID:9865699 MGI:1316601 NCBI chr13:73,348,874...73,400,416
Ensembl chr13:73,348,842...73,400,416
JBrowse link
negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ift122 intraflagellar transport 122 ISO (MGI:4888042|PMID:21209331) RGD PMID:21209331 MGI:4888042 NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
JBrowse link
G Rfx4 regulatory factor X4 ISO
IBA
MGI:3799278 (MGI:5430880|PMID:19887680)
PMID:21873635
RGD PMID:19887680, PMID:21873635 MGI:5430880, RGD:13792537 NCBI chr 7:25,831,358...25,909,976
Ensembl chr 7:25,808,419...25,907,849
JBrowse link
G Tulp3 TUB like protein 3 ISO MGI:2388066 (MGI:3841503|PMID:19286674) RGD PMID:19286674 MGI:3841503 NCBI chr 4:161,636,084...161,677,807
Ensembl chr 4:161,637,892...161,658,519
JBrowse link
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 ISO MGI:95729 (MGI:3051712|PMID:15215207) RGD PMID:15215207 MGI:3051712 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:95728 (MGI:3051712|PMID:15215207) RGD PMID:15215207 MGI:3051712 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling ISO MGI:4840420 (MGI:4355593|PMID:19684112) RGD PMID:19684112 MGI:4355593 NCBI chr 1:266,143,766...266,241,742
Ensembl chr 1:266,143,818...266,239,016
JBrowse link
smoothened signaling pathway involved in ventral spinal cord interneuron specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 ISO MGI:95729 (MGI:3051712|PMID:15215207) RGD PMID:15215207 MGI:3051712 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:95728 (MGI:3051712|PMID:15215207) RGD PMID:15215207 MGI:3051712 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling ISO MGI:4840420 (MGI:4355593|PMID:19684112) RGD PMID:19684112 MGI:4355593 NCBI chr 1:266,143,766...266,241,742
Ensembl chr 1:266,143,818...266,239,016
JBrowse link
smoothened signaling pathway involved in ventral spinal cord patterning term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smo smoothened, frizzled class receptor IEA
ISO
GO_REF:0000107
MGI:2176255 (MGI:3841503|PMID:19286674), (MGI:4888042|PMID:21209331)
Ensembl
RGD
PMID:19286674, PMID:21209331 GO_REF:0000107, MGI:3841503, MGI:4888042 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
somatic motor neuron differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln8 CLN8, transmembrane ER and ERGIC protein ISO (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr16:79,828,321...79,838,212
Ensembl chr16:79,828,324...79,838,212
JBrowse link
G Phox2a paired-like homeobox 2a IEA
ISO
GO_REF:0000107
MGI:3521825 (MGI:3761765|PMID:16319924)
Ensembl
RGD
PMID:16319924 GO_REF:0000107, MGI:3761765 NCBI chr 1:166,893,734...166,898,252
Ensembl chr 1:166,893,734...166,898,252
JBrowse link
G Tctn1 tectonic family member 1 ISO MGI:3716885 (MGI:3610767|PMID:16357211) RGD PMID:16357211 MGI:3610767 NCBI chr12:39,790,948...39,828,215
Ensembl chr12:39,790,965...39,824,064
JBrowse link
spinal cord anterior/posterior patterning term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdf11 growth differentiation factor 11 ISO MGI:2449672 (MGI:3701017|PMID:16790475) RGD PMID:16790475 MGI:3701017 NCBI chr 7:3,306,863...3,315,856
Ensembl chr 7:3,306,863...3,315,856
JBrowse link
spinal cord association neuron differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 ISO MGI:1857470 (MGI:3639800|PMID:16715081) RGD PMID:16715081 MGI:3639800 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
G Gdf7 growth differentiation factor 7 ISO MGI:2386906 (MGI:1353705|PMID:10693795) RGD PMID:10693795 MGI:1353705 NCBI chr 6:33,496,596...33,507,626
Ensembl chr 6:33,503,217...33,507,542
JBrowse link
G Gsx1 GS homeobox 1 ISO MGI:95843 (MGI:3639800|PMID:16715081) RGD PMID:16715081 MGI:3639800 NCBI chr12:9,605,873...9,607,168
Ensembl chr12:9,605,873...9,607,168
JBrowse link
G Gsx2 GS homeobox 2 ISO MGI:95842 (MGI:3639800|PMID:16715081) RGD PMID:16715081 MGI:3639800 NCBI chr14:35,650,985...35,652,709
Ensembl chr14:35,650,985...35,652,709
JBrowse link
G Lhx1 LIM homeobox 1 ISS
ISO
GO_REF:0000024
UniProtKB:P61375 (MGI:3695495|PMID:17166926)
UniProt
RGD
PMID:17166926 GO_REF:0000024, MGI:3695495 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Lhx3 LIM homeobox 3 ISO (MGI:3840011|PMID:19323994) RGD PMID:19323994 MGI:3840011 NCBI chr 3:3,653,861...3,662,509
Ensembl chr 3:3,654,755...3,661,810
JBrowse link
G Lhx5 LIM homeobox 5 ISO UniProtKB:P63006 (MGI:3695495|PMID:17166926) RGD PMID:17166926 MGI:3695495 NCBI chr12:41,663,000...41,671,437
Ensembl chr12:41,663,000...41,671,437
JBrowse link
G Lmo4 LIM domain only 4 ISO MGI:98480 (MGI:3840011|PMID:19323994) RGD PMID:19323994 MGI:3840011 NCBI chr 2:250,218,635...250,235,435
Ensembl chr 2:250,218,641...250,241,673
JBrowse link
G Mdga1 MAM domain containing glycosylphosphatidylinositol anchor 1 IEP PMID:15019943 HGNC PMID:15019943 RGD:8554528 NCBI chr20:8,515,142...8,574,632
Ensembl chr20:8,515,142...8,574,082
JBrowse link
G Pax3 paired box 3 ISO MGI:97491 (MGI:1321412|PMID:9858722) RGD PMID:9858722 MGI:1321412 NCBI chr 9:84,004,004...84,101,226
Ensembl chr 9:84,005,183...84,101,172
JBrowse link
G Pax7 paired box 7 ISO MGI:97487 (MGI:1321412|PMID:9858722) RGD PMID:9858722 MGI:1321412 NCBI chr 5:158,211,001...158,313,510
Ensembl chr 5:158,214,616...158,313,426
JBrowse link
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor ISO MGI:109360 (MGI:3840011|PMID:19323994) RGD PMID:19323994 MGI:3840011 NCBI chr 5:133,864,401...133,878,604
Ensembl chr 5:133,864,798...133,878,830
JBrowse link
G Wnt1 Wnt family member 1 ISO MGI:98956 (MGI:2176385|PMID:11877374) RGD PMID:11877374 MGI:2176385 NCBI chr 7:140,464,999...140,469,046
Ensembl chr 7:140,464,999...140,469,046
JBrowse link
G Wnt3a Wnt family member 3A ISO MGI:98953 (MGI:2176385|PMID:11877374) RGD PMID:11877374 MGI:2176385 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link
spinal cord dorsal/ventral patterning term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fuz fuzzy planar cell polarity protein ISO MGI:4346364 (MGI:5052192|PMID:21761479) RGD PMID:21761479 MGI:5052192 NCBI chr 1:100,891,832...100,896,811
Ensembl chr 1:100,891,866...100,896,807
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:1857509|MGI:2158472|MGI:95729|MGI:99833 (MGI:2154468|PMID:11748151), (MGI:3051712|PMID:15215207), (MGI:3612806|PMID:16364285) RGD PMID:11748151, PMID:15215207, PMID:16364285 MGI:2154468, MGI:3051712, MGI:3612806 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:95728|MGI:99833 (MGI:3051712|PMID:15215207), (MGI:3612806|PMID:16364285) RGD PMID:15215207, PMID:16364285 MGI:3051712, MGI:3612806 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Ift88 intraflagellar transport 88 ISO MGI:1859153 (MGI:5052192|PMID:21761479) RGD PMID:21761479 MGI:5052192 NCBI chr15:37,690,417...37,786,855
Ensembl chr15:37,691,345...37,784,924
JBrowse link
G Intu inturned planar cell polarity protein IEA
ISO
GO_REF:0000107
MGI:4441401 (MGI:5052192|PMID:21761479)
Ensembl
RGD
PMID:21761479 GO_REF:0000107, MGI:5052192 NCBI chr 2:127,589,325...127,611,705
Ensembl chr 2:127,459,012...127,525,437
JBrowse link
G Rab23 RAB23, member RAS oncogene family ISO MGI:2137533|MGI:2682064|MGI:95728|MGI:95729 (MGI:2679893|PMID:14603322), (MGI:3577662|PMID:15755804), (MGI:3612806|PMID:16364285) RGD PMID:14603322, PMID:15755804, PMID:16364285 MGI:2679893, MGI:3577662, MGI:3612806 NCBI chr 9:38,469,784...38,496,185
Ensembl chr 9:38,470,298...38,495,176
JBrowse link
G Shh sonic hedgehog signaling molecule IDA
ISO
IEA
PMID:9230312
MGI:1857796 (MGI:2154468|PMID:11748151)
GO_REF:0000107
RGD
Ensembl
PMID:11748151, PMID:9230312 GO_REF:0000107, MGI:2154468, RGD:8553789 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling ISO MGI:3619046 (MGI:3616741|PMID:16459298) RGD PMID:16459298 MGI:3616741 NCBI chr 1:266,143,766...266,241,742
Ensembl chr 1:266,143,818...266,239,016
JBrowse link
spinal cord motor neuron cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxc10 homeo box C10 ISO MGI:96202 (MGI:3771768|PMID:18065432) RGD PMID:18065432 MGI:3771768 NCBI chr 7:144,577,578...144,582,802
Ensembl chr 7:144,577,465...144,582,622
JBrowse link
G Hoxd10 homeo box D10 ISO MGI:96192 (MGI:3771768|PMID:18065432) RGD PMID:18065432 MGI:3771768 NCBI chr 3:61,614,133...61,617,342
Ensembl chr 3:61,613,774...61,617,367
JBrowse link
G Isl1 ISL LIM homeobox 1 ISO MGI:102673 (MGI:4356383|PMID:19666821) RGD PMID:19666821 MGI:4356383 NCBI chr 2:48,488,911...48,501,217
Ensembl chr 2:48,487,736...48,501,436
JBrowse link
G Isl2 ISL LIM homeobox 2 IEA
ISO
GO_REF:0000107
MGI:102673 (MGI:4356383|PMID:19666821)
Ensembl
RGD
PMID:19666821 GO_REF:0000107, MGI:4356383 NCBI chr 8:60,117,565...60,122,716
Ensembl chr 8:60,117,729...60,122,211
JBrowse link
G Lhx3 LIM homeobox 3 ISO MGI:101791|MGI:109156 (MGI:4356383|PMID:19666821) RGD PMID:19666821 MGI:4356383 NCBI chr 3:3,653,861...3,662,509
Ensembl chr 3:3,654,755...3,661,810
JBrowse link
G Mnx1 motor neuron and pancreas homeobox 1 ISO
IBA
MGI:2182358|MGI:2182361|MGI:2182363 (MGI:1344237|PMID:10482234)
PMID:21873635
RGD PMID:10482234, PMID:21873635 MGI:1344237, RGD:13792537 NCBI chr 4:2,376,350...2,381,308
Ensembl chr 4:2,376,958...2,381,271
JBrowse link
G Olig3 oligodendrocyte transcription factor 3 ISO MGI:3573868 (MGI:3531376|PMID:15769945) RGD PMID:15769945 MGI:3531376 NCBI chr 1:14,797,766...14,799,835
Ensembl chr 1:14,797,766...14,799,835
JBrowse link
spinal cord motor neuron differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 ISO MGI:99954 (MGI:3845694|PMID:19299493) RGD PMID:19299493 MGI:3845694 NCBI chr17:43,946,118...43,948,224
Ensembl chr17:43,946,130...43,948,223
JBrowse link
G Cacna1a calcium voltage-gated channel subunit alpha1 A IEA
ISO
GO_REF:0000107
MGI:1856209|MGI:1856211 (MGI:3794823|PMID:17156092)
Ensembl
RGD
PMID:17156092 GO_REF:0000107, MGI:3794823 NCBI chr19:25,453,236...25,749,550
Ensembl chr19:25,526,751...25,749,550
JBrowse link
G Cln8 CLN8, transmembrane ER and ERGIC protein ISO MGI:1856959 (MGI:3709684|PMID:2061715) RGD PMID:2061715 MGI:3709684 NCBI chr16:79,828,321...79,838,212
Ensembl chr16:79,828,324...79,838,212
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO MGI:3589208 (MGI:5140688|PMID:21338882) RGD PMID:21338882 MGI:5140688 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 IEA
ISO
GO_REF:0000107
MGI:105373|MGI:95729|MGI:98297 (MGI:5441704|PMID:21552265)
Ensembl
RGD
PMID:21552265 GO_REF:0000107, MGI:5441704 NCBI chr 8:5,217,054...5,436,969
Ensembl chr 8:5,217,217...5,429,581
JBrowse link
G Gbx1 gastrulation brain homeobox 1 ISO (MGI:5491108|PMID:23418536) RGD PMID:23418536 MGI:5491108 NCBI chr 4:7,173,961...7,200,752
Ensembl chr 4:7,173,961...7,200,752
JBrowse link
G Gdpd5 glycerophosphodiester phosphodiesterase domain containing 5 ISO MGI:5302017 (MGI:5299268|PMID:21943603) RGD PMID:21943603 MGI:5299268 NCBI chr 1:164,337,176...164,418,056
Ensembl chr 1:164,380,577...164,418,593
JBrowse link
G Gigyf2 GRB10 interacting GYF protein 2 ISO MGI:4126459 (MGI:4366664|PMID:19744960) RGD PMID:19744960 MGI:4366664 NCBI chr 9:94,425,191...94,550,431
Ensembl chr 9:94,425,252...94,550,431
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:1857509 (MGI:5441704|PMID:21552265) RGD PMID:21552265 MGI:5441704 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:107736 (MGI:5441704|PMID:21552265) RGD PMID:21552265 MGI:5441704 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Ift172 intraflagellar transport 172 ISO MGI:2682066 (MGI:5441704|PMID:21552265) RGD PMID:21552265 MGI:5441704 NCBI chr 6:26,390,686...26,485,459 JBrowse link
G Ighmbp2 immunoglobulin mu DNA binding protein 2 ISO MGI:1857648 (MGI:3845694|PMID:19299493) RGD PMID:19299493 MGI:3845694 NCBI chr 1:218,509,274...218,531,922
Ensembl chr 1:218,508,950...218,532,142
JBrowse link
G Isl1 ISL LIM homeobox 1 ISO MGI:2182246 (MGI:78615|PMID:8565076) RGD PMID:8565076 MGI:78615 NCBI chr 2:48,488,911...48,501,217
Ensembl chr 2:48,487,736...48,501,436
JBrowse link
G Lbx1 ladybird homeobox 1 ISO MGI:2149955 (MGI:3531376|PMID:15769945) RGD PMID:15769945 MGI:3531376 NCBI chr 1:264,973,315...264,975,132
Ensembl chr 1:264,973,315...264,975,132
JBrowse link
G Lmo4 LIM domain only 4 ISO (MGI:4356383|PMID:19666821) RGD PMID:19666821 MGI:4356383 NCBI chr 2:250,218,635...250,235,435
Ensembl chr 2:250,218,641...250,241,673
JBrowse link
G Mdga2 MAM domain containing glycosylphosphatidylinositol anchor 2 IEP PMID:15019943 HGNC PMID:15019943 RGD:8554528 NCBI chr 6:88,442,620...89,292,454
Ensembl chr 6:88,447,749...88,917,070
JBrowse link
G Mir17 microRNA 17 ISO MGI:2676844|MGI:2676868|MGI:2676872|MGI:3618743|MGI:3619438|MGI:3629917|MGI:3629918|MGI:3790968 (MGI:5140688|PMID:21338882) RGD PMID:21338882 MGI:5140688 NCBI chr15:100,179,879...100,179,962
Ensembl chr15:100,179,879...100,179,962
JBrowse link
G Mir18a microRNA 18a ISO MGI:2676868|MGI:2676872|MGI:3618743|MGI:3619065|MGI:3619438|MGI:3629917|MGI:3629918 (MGI:5140688|PMID:21338882) RGD PMID:21338882 MGI:5140688 NCBI chr15:100,180,015...100,180,110
Ensembl chr15:100,180,015...100,180,110
JBrowse link
G Mir19a microRNA 19a ISO MGI:2676844|MGI:2676872|MGI:3619065|MGI:3629917|MGI:3629918 (MGI:5140688|PMID:21338882) RGD PMID:21338882 MGI:5140688 NCBI chr15:100,180,162...100,180,243
Ensembl chr15:100,180,162...100,180,243
JBrowse link
G Mir19b1 microRNA 19b-1 ISO MGI:2676844|MGI:2676872|MGI:3618743|MGI:3619065|MGI:3629918 (MGI:5139953|PMID:21741442) RGD PMID:21741442 MGI:5139953 NCBI chr15:100,180,464...100,180,550
Ensembl chr15:100,180,464...100,180,550
JBrowse link
G Mir20a microRNA 20a ISO MGI:2676844|MGI:3618743|MGI:3619065|MGI:3629917|MGI:3629918 (MGI:5140688|PMID:21338882) RGD PMID:21338882 MGI:5140688 NCBI chr15:100,180,334...100,180,418
Ensembl chr15:100,180,334...100,180,418
JBrowse link
G Mir92a1 microRNA 92a-1 ISO MGI:2676844|MGI:2676872|MGI:3618743|MGI:3619065|MGI:3629917 (MGI:5140688|PMID:21338882) RGD PMID:21338882 MGI:5140688 NCBI chr15:100,180,586...100,180,663
Ensembl chr15:100,180,586...100,180,663
JBrowse link
G Nfe2l1 nuclear factor, erythroid 2-like 1 ISO MGI:3828165 (MGI:5433806|PMID:21554501) RGD PMID:21554501 MGI:5433806 NCBI chr10:84,686,762...84,699,313
Ensembl chr10:84,682,460...84,698,886
JBrowse link
G Nkx2-2 NK2 homeobox 2 ISO MGI:1932100 (MGI:1334824|PMID:10217145) RGD PMID:10217145 MGI:1334824 NCBI chr 3:141,408,460...141,419,083
Ensembl chr 3:141,408,798...141,411,170
JBrowse link
G Olig2 oligodendrocyte transcription factor 2 ISO MGI:3774124 (MGI:5140688|PMID:21338882) RGD PMID:21338882 MGI:5140688 NCBI chr11:31,389,514...31,392,890
Ensembl chr11:31,389,514...31,392,890
JBrowse link
G Olig3 oligodendrocyte transcription factor 3 ISO MGI:104867|MGI:3573868 (MGI:3530702|PMID:15674731), (MGI:3531376|PMID:15769945) RGD PMID:15674731, PMID:15769945 MGI:3530702, MGI:3531376 NCBI chr 1:14,797,766...14,799,835
Ensembl chr 1:14,797,766...14,799,835
JBrowse link
G Ptch1 patched 1 ISO MGI:107736 (MGI:5441704|PMID:21552265) RGD PMID:21552265 MGI:5441704 NCBI chr17:1,032,242...1,085,885
Ensembl chr17:1,029,048...1,093,873
JBrowse link
G Scyl1 SCY1 like pseudokinase 1 ISO MGI:1921385|MGI:5469960 (MGI:6161057|PMID:29437892) RGD PMID:29437892 MGI:6161057 NCBI chr 1:221,115,992...221,129,668
Ensembl chr 1:221,115,860...221,129,654
JBrowse link
G Scyl3 SCY1 like pseudokinase 3 ISO MGI:1931787 (MGI:6161057|PMID:29437892) RGD PMID:29437892 MGI:6161057 NCBI chr13:82,230,938...82,255,640
Ensembl chr13:82,231,030...82,254,318
JBrowse link
G Shh sonic hedgehog signaling molecule IEA
ISO
GO_REF:0000107
MGI:107736 (MGI:5441704|PMID:21552265)
Ensembl
RGD
PMID:21552265 GO_REF:0000107, MGI:5441704 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Sox4 SRY-box transcription factor 4 ISO (MGI:4838379|PMID:20646169) RGD PMID:20646169 MGI:4838379 NCBI chr17:37,615,022...37,619,728 JBrowse link
spinal cord oligodendrocyte cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 ISO MGI:1355331|MGI:97347 (MGI:3794240|PMID:18287202) RGD PMID:18287202 MGI:3794240 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
G Nkx2-2 NK2 homeobox 2 ISO MGI:1932100|MGI:96919 (MGI:3574147|PMID:11526078), (MGI:3794240|PMID:18287202) RGD PMID:11526078, PMID:18287202 MGI:3574147, MGI:3794240 NCBI chr 3:141,408,460...141,419,083
Ensembl chr 3:141,408,798...141,411,170
JBrowse link
G Olig2 oligodendrocyte transcription factor 2 ISO MGI:96919 (MGI:3794240|PMID:18287202) RGD PMID:18287202 MGI:3794240 NCBI chr11:31,389,514...31,392,890
Ensembl chr11:31,389,514...31,392,890
JBrowse link
G Sox13 SRY-box transcription factor 13 ISO UniProtKB:P40645 (MGI:5766856|PMID:26525805) RGD PMID:26525805 MGI:5766856 NCBI chr13:50,434,702...50,479,118
Ensembl chr13:50,434,702...50,479,657
JBrowse link
G Sox6 SRY-box transcription factor 6 ISO (MGI:5766856|PMID:26525805) RGD PMID:26525805 MGI:5766856 NCBI chr 1:185,631,702...186,186,192
Ensembl chr 1:185,673,177...186,182,829
JBrowse link
spinal cord oligodendrocyte cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 ISO MGI:1857470 (MGI:3794240|PMID:18287202) RGD PMID:18287202 MGI:3794240 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
G Nkx2-2 NK2 homeobox 2 ISO (MGI:3794240|PMID:18287202) RGD PMID:18287202 MGI:3794240 NCBI chr 3:141,408,460...141,419,083
Ensembl chr 3:141,408,798...141,411,170
JBrowse link
G Olig2 oligodendrocyte transcription factor 2 ISO (MGI:3794240|PMID:18287202) RGD PMID:18287202 MGI:3794240 NCBI chr11:31,389,514...31,392,890
Ensembl chr11:31,389,514...31,392,890
JBrowse link
spinal cord patterning term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Reln reelin IEP
ISO
ISS
IEA
MGI:1856398 (MGI:3625412|PMID:16580148)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:16580148, PMID:14648677 GO_REF:0000024, GO_REF:0000107, MGI:3625412, RGD:2317803 NCBI chr 4:9,347,533...9,774,257
Ensembl chr 4:9,347,528...9,773,670
JBrowse link
spinal cord ventral commissure morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adarb1 adenosine deaminase, RNA-specific, B1 IEA
ISO
GO_REF:0000107
MGI:4840554 (MGI:4831065|PMID:20826656)
Ensembl
RGD
PMID:20826656 GO_REF:0000107, MGI:4831065 NCBI chr20:11,972,352...12,101,022
Ensembl chr20:11,972,381...12,101,047
JBrowse link
G Dcc DCC netrin 1 receptor IEA
ISO
GO_REF:0000107
MGI:1934924 (MGI:87114|PMID:9126737)
Ensembl
RGD
PMID:9126737 GO_REF:0000107, MGI:87114 NCBI chr18:66,518,213...67,629,801
Ensembl chr18:66,523,120...67,224,566
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:1857509 (MGI:1340208|PMID:10409510) RGD PMID:10409510 MGI:1340208 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
ventral spinal cord development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dab1 DAB adaptor protein 1 ISO
IBA
(PMID:20711475)
PMID:21873635
RGD PMID:20711475, PMID:21873635 RGD:13792537 NCBI chr 5:123,154,360...124,279,170
Ensembl chr 5:123,905,166...124,280,115
JBrowse link
G Dctn1 dynactin subunit 1 ISO
IEA
(PMID:18305234)
GO_REF:0000107
RGD
Ensembl
PMID:18305234 GO_REF:0000107 NCBI chr 4:114,876,770...114,896,567
Ensembl chr 4:114,876,770...114,896,573
JBrowse link
G Foxp1 forkhead box P1 ISO (PMID:20711475) RGD PMID:20711475 NCBI chr 4:131,362,178...131,963,466
Ensembl chr 4:131,366,744...131,694,755
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:2158472 (MGI:2154468|PMID:11748151) RGD PMID:11748151 MGI:2154468 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Lhx1 LIM homeobox 1 ISO (PMID:20711475) RGD PMID:20711475 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Lrp8 LDL receptor related protein 8 ISO (PMID:20711475) RGD PMID:20711475 NCBI chr 5:127,404,348...127,476,636
Ensembl chr 5:127,404,450...127,476,641
JBrowse link
G Pax6 paired box 6 ISO (MGI:4834949|PMID:20844123) RGD PMID:20844123 MGI:4834949 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Reln reelin IEA
ISO
GO_REF:0000107
(PMID:20711475)
Ensembl
RGD
PMID:20711475 GO_REF:0000107 NCBI chr 4:9,347,533...9,774,257
Ensembl chr 4:9,347,528...9,773,670
JBrowse link
G Vldlr very low density lipoprotein receptor IEA
ISO
GO_REF:0000107
(PMID:20711475)
Ensembl
RGD
PMID:20711475 GO_REF:0000107 NCBI chr 1:245,236,819...245,273,688
Ensembl chr 1:245,237,736...245,269,205
JBrowse link
G Vstm5 V-set and transmembrane domain containing 5 ISO (PMID:25826454) RGD PMID:25826454 NCBI chr 8:13,796,009...13,816,125
Ensembl chr 8:13,796,021...13,816,109
JBrowse link
ventral spinal cord interneuron differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxn4 forkhead box N4 ISO (MGI:4834949|PMID:20844123) RGD PMID:20844123 MGI:4834949 NCBI chr12:48,101,012...48,121,281
Ensembl chr12:48,101,673...48,121,270
JBrowse link
G Gata2 GATA binding protein 2 ISO MGI:1857743 (MGI:1861374|PMID:10934027) RGD PMID:10934027 MGI:1861374 NCBI chr 4:120,129,028...120,142,490
Ensembl chr 4:120,133,713...120,142,488
JBrowse link
G Lmo4 LIM domain only 4 ISO (MGI:4356383|PMID:19666821) RGD PMID:19666821 MGI:4356383 NCBI chr 2:250,218,635...250,235,435
Ensembl chr 2:250,218,641...250,241,673
JBrowse link
ventral spinal cord interneuron fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 ISS
ISO
GO_REF:0000024
(MGI:3587461|PMID:16020526)
UniProt
RGD
PMID:16020526 GO_REF:0000024, MGI:3587461 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
G Dll4 delta like canonical Notch ligand 4 ISO UniProtKB:Q8K3Q3 (PMID:17728344) RGD PMID:17728344 NCBI chr 3:111,135,011...111,146,746
Ensembl chr 3:111,135,021...111,145,986
JBrowse link
G Foxn4 forkhead box N4 ISO (MGI:3587461|PMID:16020526), (MGI:3765356|PMID:17728344) RGD PMID:16020526, PMID:17728344 MGI:3587461, MGI:3765356 NCBI chr12:48,101,012...48,121,281
Ensembl chr12:48,101,673...48,121,270
JBrowse link
ventral spinal cord interneuron fate determination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-2 NK2 homeobox 2 ISO MGI:1932100 (MGI:1334824|PMID:10217145) RGD PMID:10217145 MGI:1334824 NCBI chr 3:141,408,460...141,419,083
Ensembl chr 3:141,408,798...141,411,170
JBrowse link
ventral spinal cord interneuron specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbx1 developing brain homeobox 1 ISO MGI:2182329 (MGI:2136554|PMID:11239429) RGD PMID:11239429 MGI:2136554 NCBI chr 1:104,969,218...104,973,648
Ensembl chr 1:104,969,218...104,973,648
JBrowse link
G Dmrt3 doublesex and mab-3 related transcription factor 3 ISO MGI:4420993 (MGI:5435948|PMID:22932389) RGD PMID:22932389 MGI:5435948 NCBI chr 1:243,589,607...243,602,926
Ensembl chr 1:243,589,607...243,602,926
JBrowse link
G Lhx3 LIM homeobox 3 ISO (MGI:4356383|PMID:19666821) RGD PMID:19666821 MGI:4356383 NCBI chr 3:3,653,861...3,662,509
Ensembl chr 3:3,654,755...3,661,810
JBrowse link
G Shh sonic hedgehog signaling molecule IDA PMID:9230312 MGI PMID:9230312 RGD:8553789 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Sox1 SRY-box transcription factor 1 ISO MGI:3653406 (MGI:4834949|PMID:20844123) RGD PMID:20844123 MGI:4834949
visceral motor neuron differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isl1 ISL LIM homeobox 1 ISO MGI:109156 (MGI:3041365|PMID:14766174) RGD PMID:14766174 MGI:3041365 NCBI chr 2:48,488,911...48,501,217
Ensembl chr 2:48,487,736...48,501,436
JBrowse link
G Isl2 ISL LIM homeobox 2 IEA
ISO
GO_REF:0000107
MGI:101791|MGI:3046260 (MGI:3041365|PMID:14766174)
Ensembl
RGD
PMID:14766174 GO_REF:0000107, MGI:3041365 NCBI chr 8:60,117,565...60,122,716
Ensembl chr 8:60,117,729...60,122,211
JBrowse link
G Tbx20 T-box transcription factor 20 ISO (MGI:3604925|PMID:15843409) RGD PMID:15843409 MGI:3604925 NCBI chr 8:25,849,394...25,904,570
Ensembl chr 8:25,850,962...25,904,570
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20030
    developmental process 6828
      anatomical structure development 6270
        animal organ development 4033
          spinal cord development 141
            cell differentiation in spinal cord + 63
            central canal development 0
            dorsal spinal cord development + 22
            spinal cord patterning + 23
            spinal cord ventral commissure morphogenesis 3
            ventral spinal cord development + 57
Path 2
Term Annotations click to browse term
  biological_process 20030
    developmental process 6828
      anatomical structure development 6270
        multicellular organism development 5744
          system development 5280
            nervous system development 2720
              central nervous system development 1261
                spinal cord development 141
                  cell differentiation in spinal cord + 63
                  central canal development 0
                  dorsal spinal cord development + 22
                  spinal cord patterning + 23
                  spinal cord ventral commissure morphogenesis 3
                  ventral spinal cord development + 57
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.