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ONTOLOGY REPORT - ANNOTATIONS


Term:nuclear cyclin-dependent protein kinase holoenzyme complex
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Accession:GO:0019908 term browser browse the term
Definition:Cyclin-dependent protein kinase (CDK) complex found in the nucleus.
Synonyms:broad_synonym: CDK holoenzyme



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nuclear cyclin-dependent protein kinase holoenzyme complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bccip BRCA2 and CDKN1A interacting protein part_of ISO (PMID:10878006) RGD PMID:10878006 NCBI chr 1:188,512,544...188,524,957
Ensembl chr 1:188,512,367...188,524,958
JBrowse link
G Cdk12 cyclin-dependent kinase 12 part_of IDA PMID:16537916 UniProt PMID:16537916 RGD:8553775 NCBI chr10:83,201,177...83,256,906
Ensembl chr10:83,201,211...83,280,888
JBrowse link
G Cdk13 cyclin-dependent kinase 13 part_of ISO (MGI:3699439|PMID:17261272) RGD PMID:17261272 MGI:3699439 NCBI chr17:47,251,145...47,344,675
Ensembl chr17:47,251,163...47,341,721
JBrowse link
cyclin-dependent protein kinase activating kinase holoenzyme complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnh cyclin H part_of ISO (PMID:23393140), (PMID:8692841), (PMID:8692842) RGD PMID:8692841 PMID:8692842 PMID:23393140 NCBI chr 2:15,834,833...15,855,643
Ensembl chr 2:15,834,833...15,855,819
JBrowse link
G Cdk7 cyclin-dependent kinase 7 part_of ISO
IEA
(PMID:23393140), (PMID:8692841)
GO_REF:0000107
RGD
Ensembl
PMID:8692841 PMID:23393140 GO_REF:0000107 NCBI chr 2:31,840,545...31,865,447
Ensembl chr 2:31,840,558...31,865,383
JBrowse link
G Mnat1 MNAT1 component of CDK activating kinase part_of ISO (PMID:11445587), (PMID:8692841) RGD PMID:8692841 PMID:11445587 NCBI chr 6:91,814,703...91,971,945
Ensembl chr 6:91,814,749...91,970,744
JBrowse link
cyclin/CDK positive transcription elongation factor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brd4 bromodomain containing 4 part_of ISO (MGI:5500979|PMID:23752591) RGD PMID:23752591 MGI:5500979 NCBI chr 7:11,216,446...11,296,029
Ensembl chr 7:11,216,446...11,295,539
JBrowse link
G Ccnk cyclin K part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:127,090,115...127,113,195
Ensembl chr 6:127,090,569...127,113,191
JBrowse link
G Ccnt1 cyclin T1 part_of
located_in
ISO
IBA
(PMID:15905409), (PMID:9499409)
(PMID:18566585)
PMID:21873635
RGD PMID:9499409 PMID:15905409 PMID:18566585 PMID:21873635 RGD:13792537 NCBI chr 7:129,687,146...129,718,082
Ensembl chr 7:129,691,209...129,717,871
JBrowse link
G Ccnt2 cyclin T2 part_of
located_in
ISO
IBA
(PMID:9499409)
PMID:21873635
RGD PMID:9499409 PMID:21873635 RGD:13792537 NCBI chr13:39,251,573...39,293,172
Ensembl chr13:39,251,573...39,292,019
JBrowse link
G Cdk12 cyclin-dependent kinase 12 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:83,201,177...83,256,906
Ensembl chr10:83,201,211...83,280,888
JBrowse link
G Cdk13 cyclin-dependent kinase 13 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:47,251,145...47,344,675
Ensembl chr17:47,251,163...47,341,721
JBrowse link
G Cdk9 cyclin-dependent kinase 9 part_of
located_in
ISO
ISS
(PMID:15905409), (PMID:9499409)
(PMID:18566585), (PMID:9499409)
(MGI:5500979|PMID:23752591)
GO_REF:0000024
RGD
UniProt
PMID:9499409 PMID:15905409 PMID:18566585 PMID:23752591 GO_REF:0000024 MGI:5500979 NCBI chr 3:15,996,467...16,001,315
Ensembl chr 3:15,996,468...16,002,410
JBrowse link
G Rb1 RB transcriptional corepressor 1 colocalizes_with
part_of
ISO
IEA
ISS
(PMID:12037672)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:12037672 GO_REF:0000024 GO_REF:0000107 NCBI chr15:48,371,295...48,502,473
Ensembl chr15:48,371,296...48,502,302
JBrowse link
G Snw1 SNW domain containing 1 colocalizes_with
part_of
ISO
IEA
(PMID:15905409)
GO_REF:0000107
RGD
Ensembl
PMID:15905409 GO_REF:0000107 NCBI chr 6:107,095,450...107,119,536
Ensembl chr 6:107,095,457...107,119,536
JBrowse link
P-TEFb complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnt1 cyclin T1 part_of ISO
IEA
(PMID:18483487), (PMID:28431135)
GO_REF:0000107
RGD
Ensembl
PMID:18483487 PMID:28431135 GO_REF:0000107 NCBI chr 7:129,687,146...129,718,082
Ensembl chr 7:129,691,209...129,717,871
JBrowse link
G Cdk9 cyclin-dependent kinase 9 part_of ISO (PMID:18483487) RGD PMID:18483487 NCBI chr 3:15,996,467...16,001,315
Ensembl chr 3:15,996,468...16,002,410
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20009
    protein-containing complex 6180
      nuclear protein-containing complex 1290
        nuclear cyclin-dependent protein kinase holoenzyme complex 13
          CKM complex 0
          cyclin-dependent protein kinase activating kinase holoenzyme complex 3
          cyclin/CDK positive transcription elongation factor complex + 9
Path 2
Term Annotations click to browse term
  cellular_component 20009
    protein-containing complex 6180
      catalytic complex 1551
        transferase complex 833
          transferase complex, transferring phosphorus-containing groups 280
            protein kinase complex 128
              serine/threonine protein kinase complex 109
                cyclin-dependent protein kinase holoenzyme complex 52
                  nuclear cyclin-dependent protein kinase holoenzyme complex 13
                    CKM complex 0
                    cyclin-dependent protein kinase activating kinase holoenzyme complex 3
                    cyclin/CDK positive transcription elongation factor complex + 9
paths to the root