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ONTOLOGY REPORT - ANNOTATIONS


Term:5-methylcytosine metabolic process
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Accession:GO:0019857 term browser browse the term
Definition:The chemical reactions and pathways involving 5-methylcytosine, a methylated base of DNA.
Synonyms:exact_synonym: 5-methylcytosine metabolism



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5-methylcytosine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tet2 tet methylcytosine dioxygenase 2 acts_upstream_of_or_within ISO MGI:5301343 (MGI:5298314|PMID:21803851) RGD PMID:21803851 MGI:5298314 NCBI chr 2:221,988,645...222,072,813
Ensembl chr 2:221,988,645...222,072,534
JBrowse link
5-methylcytosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tet1 tet methylcytosine dioxygenase 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr20:25,761,042...25,840,926
Ensembl chr20:25,768,120...25,833,052
JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 involved_in ISO (PMID:24315485) RGD PMID:24315485 NCBI chr 2:221,988,645...222,072,813
Ensembl chr 2:221,988,645...222,072,534
JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 4:115,867,412...115,964,433
Ensembl chr 4:115,871,265...115,964,193
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19512
    metabolic process 11791
      cellular metabolic process 10675
        cellular aromatic compound metabolic process 5675
          5-methylcytosine metabolic process 3
            5-methylcytosine biosynthetic process 0
            5-methylcytosine catabolic process 3
Path 2
Term Annotations click to browse term
  biological_process 19512
    cellular process 18319
      cellular metabolic process 10675
        cellular nitrogen compound metabolic process 6562
          pyrimidine-containing compound metabolic process 67
            5-methylcytosine metabolic process 3
              5-methylcytosine biosynthetic process 0
              5-methylcytosine catabolic process 3
paths to the root