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ONTOLOGY REPORT - ANNOTATIONS


Term:5-methylcytosine metabolic process
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Accession:GO:0019857 term browser browse the term
Definition:The chemical reactions and pathways involving 5-methylcytosine, a methylated base of DNA.
Synonyms:exact_synonym: 5-methylcytosine metabolism


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5-methylcytosine metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tet2 tet methylcytosine dioxygenase 2 ISO MGI:5301343 (MGI:5298314|PMID:21803851) RGD PMID:21803851 MGI:5298314 NCBI chr 2:238,719,389...238,802,975
Ensembl chr 2:238,720,835...238,803,024
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5-methylcytosine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tet1 tet methylcytosine dioxygenase 1 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr20:27,359,122...27,438,039
Ensembl chr20:27,366,213...27,437,427
JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 ISO (PMID:24315485) RGD PMID:24315485 NCBI chr 2:238,719,389...238,802,975
Ensembl chr 2:238,720,835...238,803,024
JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 4:115,060,702...115,160,800
Ensembl chr 4:115,066,309...115,157,263
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    metabolic process 12263
      cellular metabolic process 11073
        cellular aromatic compound metabolic process 5700
          5-methylcytosine metabolic process 3
            5-methylcytosine biosynthetic process 0
            5-methylcytosine catabolic process 3
Path 2
Term Annotations click to browse term
  biological_process 20020
    cellular process 18792
      cellular metabolic process 11073
        cellular nitrogen compound metabolic process 6684
          pyrimidine-containing compound metabolic process 66
            5-methylcytosine metabolic process 3
              5-methylcytosine biosynthetic process 0
              5-methylcytosine catabolic process 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.