Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:5-methylcytosine metabolic process
go back to main search page
Accession:GO:0019857 term browser browse the term
Definition:The chemical reactions and pathways involving 5-methylcytosine, a methylated base of DNA.
Synonyms:exact_synonym: 5-methylcytosine metabolism



show annotations for term's descendants           Sort by:
5-methylcytosine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tet2 tet methylcytosine dioxygenase 2 acts_upstream_of_or_within ISO MGI:5301343 (MGI:5298314|PMID:21803851) RGD PMID:21803851 MGI:5298314 NCBI chr 2:221,988,645...222,072,813
Ensembl chr 2:221,988,645...222,072,534
JBrowse link
5-methylcytosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stpg4 sperm-tail PG-rich repeat containing 4 acts_upstream_of_or_within ISO (MGI:5762940|PMID:23560077) RGD PMID:23560077 MGI:5762940 NCBI chr 6:7,108,827...7,158,519
Ensembl chr 6:7,108,869...7,151,390
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr20:25,761,042...25,840,926
Ensembl chr20:25,768,120...25,833,052
JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 4:115,867,412...115,964,433
Ensembl chr 4:115,871,265...115,964,193
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20292
    metabolic process 11721
      cellular metabolic process 10285
        cellular aromatic compound metabolic process 5952
          5-methylcytosine metabolic process 4
            5-methylcytosine biosynthetic process 0
            5-methylcytosine catabolic process 3
Path 2
Term Annotations click to browse term
  biological_process 20292
    cellular process 18766
      cellular metabolic process 10285
        cellular nitrogen compound metabolic process 6735
          pyrimidine-containing compound metabolic process 79
            5-methylcytosine metabolic process 4
              5-methylcytosine biosynthetic process 0
              5-methylcytosine catabolic process 3
paths to the root