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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine nucleobase biosynthetic process
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Accession:GO:0019856 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases.
Synonyms:exact_synonym: pyrimidine base anabolism;   pyrimidine base biosynthesis;   pyrimidine base biosynthetic process;   pyrimidine base formation;   pyrimidine base synthesis


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pyrimidine nucleobase biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTPS1 CTP synthase 1 involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 6:170,201,749...170,233,105
Ensembl chr 6:170,201,751...170,233,016 		JBrowse link
G CTPS2 CTP synthase 2 involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr  X:13,050,740...13,181,131
Ensembl chr  X:13,049,941...13,174,568 		JBrowse link
G UMPS uridine monophosphate synthetase involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr13:135,611,857...135,650,656
Ensembl chr13:135,610,058...135,650,603 		JBrowse link
'de novo' pyrimidine nucleobase biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO
IEA
IBA		 RGD
InterPro
Ensembl
TreeGrafter
GO_Central		 PMID:1476792 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 RGD:5132591 NCBI chr 3:111,887,017...111,914,511
Ensembl chr 3:111,887,020...111,914,492 		JBrowse link
G CMPK1 cytidine/uridine monophosphate kinase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:164,161,439...164,197,429
Ensembl chr 6:164,162,518...164,197,379 		JBrowse link
G CPS1 carbamoyl-phosphate synthase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr15:113,210,038...113,339,086
Ensembl chr15:113,150,157...113,339,078 		JBrowse link
G DHODH dihydroorotate dehydrogenase (quinone) involved_in ISO
IEA		 RGD
InterPro
TreeGrafter		 PMID:1476792 GO_REF:0000002 GO_REF:0000118 RGD:5132591 NCBI chr 6:14,942,898...14,956,000
Ensembl chr 6:14,942,933...14,955,997 		JBrowse link
G MTOR mechanistic target of rapamycin kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:71,286,989...71,412,913
Ensembl chr 6:71,286,989...71,412,888 		JBrowse link
G UMPS uridine monophosphate synthetase involved_in IEA InterPro GO_REF:0000002 NCBI chr13:135,611,857...135,650,656
Ensembl chr13:135,610,058...135,650,603 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17799
    metabolic process 10358
      biosynthetic process 7358
        organic substance biosynthetic process 7293
          organic cyclic compound biosynthetic process 3729
            nucleobase biosynthetic process 18
              pyrimidine nucleobase biosynthetic process 8
                'de novo' pyrimidine nucleobase biosynthetic process 6
                cytosine biosynthetic process 0
                pyrimidine nucleobase salvage + 0
                thymine biosynthetic process 0
                uracil biosynthetic process + 0
Path 2
Term Annotations click to browse term
  biological_process 17799
    metabolic process 10358
      organic substance metabolic process 9930
        organic cyclic compound metabolic process 5601
          nucleobase-containing compound metabolic process 5148
            nucleobase-containing small molecule metabolic process 603
              nucleobase metabolic process 42
                pyrimidine nucleobase metabolic process 21
                  pyrimidine nucleobase biosynthetic process 8
                    'de novo' pyrimidine nucleobase biosynthetic process 6
                    cytosine biosynthetic process 0
                    pyrimidine nucleobase salvage + 0
                    thymine biosynthetic process 0
                    uracil biosynthetic process + 0
paths to the root