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ONTOLOGY REPORT - ANNOTATIONS


Term:vitamin binding
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Accession:GO:0019842 term browser browse the term
Definition:Binding to a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body.


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vitamin binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ggcx gamma-glutamyl carboxylase ISO RGD PMID:12754193 RGD:1582507 NCBI chrNW_004936712:1,696,264...1,709,087 JBrowse link
G Pank3 pantothenate kinase 3 enables ISO (PMID:27555321) UniProt PMID:27555321 NCBI chrNW_004936622:810,016...836,103 JBrowse link
G Pygl glycogen phosphorylase L enables ISO (PMID:12204691) UniProt PMID:12204691 NCBI chrNW_004936495:14,692,688...14,728,663 JBrowse link
G Ttpa alpha tocopherol transfer protein ISO RGD PMID:8349655 RGD:730016 NCBI chrNW_004936496:10,409,948...10,466,722 JBrowse link
11-cis retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 enables ISO (PMID:23144455) UniProt PMID:23144455 NCBI chrNW_004936537:4,969,456...5,326,682 JBrowse link
G LOC101970102 cytochrome P450 27C1 enables ISO (PMID:27059013) UniProt PMID:27059013 NCBI chrNW_004936469:44,016,925...44,042,569 JBrowse link
G Opn3 opsin 3 enables ISO (PMID:31097585) UniProt PMID:31097585 NCBI chrNW_004936526:8,833,495...8,876,631 JBrowse link
G Opn4 opsin 4 enables ISO (PMID:15674244) UniProt PMID:15674244 NCBI chrNW_004936804:261,210...272,449 JBrowse link
G Opn5 opsin 5 enables ISO (PMID:22043319)
(MGI:6230806|PMID:22043319)
(MGI:5582695|PMID:24403072)
UniProt
MGI
PMID:22043319 PMID:24403072 MGI:5582695 MGI:6230806 NCBI chrNW_004936476:12,740,038...12,766,310 JBrowse link
G Rlbp1 retinaldehyde binding protein 1 enables ISO (MGI:1097298|PMID:9326942) MGI PMID:9326942 MGI:1097298 NCBI chrNW_004936483:15,086,485...15,097,980 JBrowse link
all-trans retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 enables ISO (PMID:20404325), (PMID:29847635), (PMID:33375396) UniProt PMID:20404325 PMID:29847635 PMID:33375396 NCBI chrNW_004936537:4,969,456...5,326,682 JBrowse link
G LOC101970102 cytochrome P450 27C1 enables ISO (PMID:27059013) UniProt PMID:27059013 NCBI chrNW_004936469:44,016,925...44,042,569 JBrowse link
G LOC101970215 cytochrome P450 2W1 enables ISO (PMID:26936974) UniProt PMID:26936974 NCBI chrNW_004936754:1,203,004...1,208,131 JBrowse link
G Opn3 opsin 3 enables ISO (PMID:31097585) UniProt PMID:31097585 NCBI chrNW_004936526:8,833,495...8,876,631 JBrowse link
all-trans-retinol binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101970102 cytochrome P450 27C1 enables ISO (PMID:27059013) UniProt PMID:27059013 NCBI chrNW_004936469:44,016,925...44,042,569 JBrowse link
G LOC101970215 cytochrome P450 2W1 enables ISO (PMID:26936974) UniProt PMID:26936974 NCBI chrNW_004936754:1,203,004...1,208,131 JBrowse link
G Rbp1 retinol binding protein 1 enables ISO (PMID:28057518) UniProt PMID:28057518 NCBI chrNW_004936540:1,600,673...1,626,573 JBrowse link
biotin binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acaca acetyl-CoA carboxylase alpha ISO RGD PMID:12949377 RGD:1601566 NCBI chrNW_004936490:927,769...1,191,483 JBrowse link
G Acacb acetyl-CoA carboxylase beta ISO RGD PMID:12949377 RGD:1601566 NCBI chrNW_004936769:950,970...1,053,671 JBrowse link
G Hlcs holocarboxylase synthetase enables ISO (PMID:14613969) UniProt PMID:14613969 NCBI chrNW_004936500:5,827,213...5,976,457 JBrowse link
G Pc pyruvate carboxylase ISO RGD PMID:12949377 RGD:1601566 NCBI chrNW_004936599:2,677,770...2,793,033 JBrowse link
calcidiol binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gc GC vitamin D binding protein enables ISO (PMID:11799400) UniProt PMID:11799400 NCBI chrNW_004936598:3,220,029...3,256,091 JBrowse link
calcitriol binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vdr vitamin D receptor enables ISO (PMID:10678179), (PMID:12016314)
(PMID:28698609)
RGD
UniProt
PMID:8179318 PMID:10678179 PMID:12016314 PMID:28698609 RGD:8158087 NCBI chrNW_004936512:5,741,836...5,800,999 JBrowse link
cobalamin binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cblif cobalamin binding intrinsic factor enables ISO (PMID:14695536) RGD
UniProt
PMID:7150665 PMID:14695536 RGD:1624372 NCBI chrNW_004936581:2,919,793...2,933,743 JBrowse link
G Cd320 CD320 molecule enables ISO (PMID:18779389) MGI PMID:18779389 NCBI chrNW_004936588:5,142,561...5,147,111 JBrowse link
G Mmab metabolism of cobalamin associated B enables ISO (PMID:28497574) UniProt PMID:28497574 NCBI chrNW_004936769:1,261,553...1,274,353 JBrowse link
G Mmut methylmalonyl-CoA mutase enables ISO (PMID:1978672), (PMID:20876572), (PMID:21138732), (PMID:28943303) UniProt PMID:1978672 PMID:20876572 PMID:21138732 PMID:28943303 NCBI chrNW_004936476:11,208,251...11,241,648 JBrowse link
G Tcn2 transcobalamin 2 enables ISO (PMID:16537422), (PMID:27411955), (PMID:8443384) RGD
UniProt
PMID:8443384 PMID:11287214 PMID:16537422 PMID:27411955 RGD:1601485 NCBI chrNW_004936904:97,535...113,886 JBrowse link
D3 vitamins binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101972957 vitamin D 25-hydroxylase enables ISO (PMID:18511070) UniProt PMID:18511070 NCBI chrNW_004936528:3,881,630...3,897,613 JBrowse link
folic acid binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhfr dihydrofolate reductase enables ISO (PMID:2303423) BHF-UCL PMID:2303423 NCBI chrNW_004936469:67,962...83,116 JBrowse link
G Dmgdh dimethylglycine dehydrogenase ISO RGD PMID:6159630 PMID:6163778 RGD:1599787 RGD:7245485 NCBI chrNW_004936549:6,838,773...6,899,961 JBrowse link
G Folr1 folate receptor alpha enables ISO (PMID:10787414), (PMID:14722620), (PMID:23851396), (PMID:2527252) RGD
BHF-UCL
PMID:2527252 PMID:10751329 PMID:10787414 PMID:14722620 PMID:23851396 RGD:1358236 NCBI chrNW_004936498:1,489,916...1,497,200 JBrowse link
G Folr2 folate receptor beta enables ISO (PMID:19116913), (PMID:25015955), (PMID:4066659) BHF-UCL PMID:4066659 PMID:19116913 PMID:25015955 NCBI chrNW_004936498:1,516,719...1,522,187 JBrowse link
G Gnmt glycine N-methyltransferase ISO RGD PMID:17158459 RGD:7242951 NCBI chrNW_004936476:16,961,734...16,965,487 JBrowse link
G Izumo1r IZUMO1 receptor, JUNO NOT|enables ISO (MGI:5568137|PMID:24739963) UniProt PMID:24739963 MGI:5568137 NCBI chrNW_004936674:614,455...616,513 JBrowse link
G Mthfs methenyltetrahydrofolate synthetase enables ISO (PMID:19738041), (PMID:7766710) BHF-UCL PMID:7766710 PMID:19738041 NCBI chrNW_004936471:37,910,856...37,964,655 JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase ISO RGD PMID:11730351 RGD:1601423 NCBI chrNW_004936484:16,087,924...16,180,089 JBrowse link
G Sardh sarcosine dehydrogenase ISO RGD PMID:6163778 RGD:7245485 NCBI chrNW_004936669:3,244,302...3,297,906 JBrowse link
G Slc19a1 solute carrier family 19 member 1 ISO RGD PMID:11600421 RGD:735239 NCBI chrNW_004936778:823,376...846,843 JBrowse link
G Tyms thymidylate synthetase ISO RGD PMID:7537805 RGD:2317419 NCBI chrNW_004936550:33,797...42,233 JBrowse link
G Uros uroporphyrinogen III synthase ISO RGD PMID:6466301 RGD:2303402 NCBI chrNW_004936486:13,792,354...13,816,744 JBrowse link
L-ascorbic acid binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plod1 procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 ISO RGD PMID:11714250 RGD:1599090 NCBI chrNW_004936474:740,582...763,294 JBrowse link
pyridoxal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal kinase ISO RGD PMID:6255956 RGD:2303024 NCBI chrNW_004936500:510,977...539,166 JBrowse link
pyridoxal phosphate binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abat 4-aminobutyrate aminotransferase enables ISO (PMID:15650327)
(PMID:6470007)
UniProt PMID:6470007 PMID:15650327 NCBI chrNW_004936530:7,543,743...7,621,392 JBrowse link
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase enables ISO (PMID:15802217)
(PMID:17696873), (PMID:20133649)
HGNC-UCL
UniProt
PMID:15802217 PMID:17696873 PMID:20133649 NCBI chrNW_004936745:856,915...867,477 JBrowse link
G Cbs cystathionine beta-synthase enables ISO (PMID:18776696), (PMID:7929220) UniProt PMID:7929220 PMID:18776696 NCBI chrNW_004936500:976,043...1,003,559 JBrowse link
G Cth cystathionine gamma-lyase enables ISO (PMID:10212249), (PMID:19019829) UniProt PMID:10212249 PMID:19019829 NCBI chrNW_004936591:1,619,446...1,643,667 JBrowse link
G Ddc dopa decarboxylase ISO RGD PMID:8422386 RGD:4139896 NCBI chrNW_004936686:1,322,153...1,405,434 JBrowse link
G Gad1 glutamate decarboxylase 1 ISO RGD PMID:1880546 RGD:6480263 NCBI chrNW_004936509:1,160,559...1,201,037 JBrowse link
G Gad2 glutamate decarboxylase 2 ISO RGD PMID:1880546 RGD:6480263 NCBI chrNW_004936484:1,737,806...1,810,378 JBrowse link
G Gldc glycine decarboxylase ISO RGD PMID:6778858 RGD:1642728 NCBI chrNW_004936539:1,008,340...1,095,044 JBrowse link
G Hdc histidine decarboxylase ISO RGD PMID:5898 PMID:4449071 PMID:7075603 PMID:9525922 PMID:12204113 More... RGD:2303726 RGD:2303727 RGD:2303728 RGD:2303733 RGD:2303734 RGD:2303735 NCBI chrNW_004936471:12,303,802...12,324,613 JBrowse link
G Kynu kynureninase ISO RGD PMID:7451426 RGD:2290547 NCBI chrNW_004936469:33,632,885...33,805,158 JBrowse link
G Pnpo pyridoxamine 5'-phosphate oxidase enables ISO (PMID:12824491) CAFA PMID:12824491 NCBI chrNW_004936490:13,374,925...13,382,037 JBrowse link
G Pygm glycogen phosphorylase, muscle associated ISO RGD PMID:11692172 RGD:1599897 NCBI chrNW_004936599:4,551,164...4,564,109 JBrowse link
G Sds serine dehydratase enables ISO (PMID:15689518) UniProt PMID:15689518 NCBI chrNW_004936668:3,208,810...3,213,465 JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 enables ISO (PMID:17482557), (PMID:24698160) RGD
BHF-UCL
PMID:3110140 PMID:17482557 PMID:24698160 RGD:2300383 NCBI chrNW_004936741:1,849,239...1,877,724 JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 enables ISO (PMID:25619277) RGD
UniProt
PMID:3110140 PMID:25619277 RGD:2300383 NCBI chrNW_004936646:1,422,844...1,427,929 JBrowse link
G Srr serine racemase enables ISO (MGI:1347751|PMID:10557334)
PMID:20106978
(PMID:20106978)
RGD
MGI
UniProt
PMID:9892700 PMID:10557334 PMID:20106978 MGI:1347751 RGD:2302218 RGD:8554326 NCBI chrNW_004936538:8,362,033...8,383,820 JBrowse link
G Thnsl2 threonine synthase like 2 enables ISO (MGI:3690523|PMID:17034760) MGI PMID:17034760 MGI:3690523 NCBI chrNW_004936712:684,711...699,714 JBrowse link
retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 ISO RGD PMID:8663198 RGD:724800 NCBI chrNW_004936471:19,175,997...19,263,335 JBrowse link
G Rho rhodopsin ISO 9-cis retinaldehyde
9-cis and 11-cis retinal
RGD PMID:2525480 PMID:8814134 RGD:6893558 RGD:6893595 NCBI chrNW_004936602:896,730...901,480 JBrowse link
retinol binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide enables ISO (PMID:9228021) RGD
UniProt
PMID:9228021 PMID:10829036 RGD:631904 NCBI chrNW_004936520:3,467,003...3,489,754 JBrowse link
G Lrat lecithin retinol acyltransferase ISO RGD PMID:2253789 PMID:8460936 PMID:9244401 RGD:1599829 RGD:1599831 RGD:1599832 NCBI chrNW_004936576:1,491,480...1,498,568 JBrowse link
G Rbp1 retinol binding protein 1 ISO RGD PMID:12850148 PMID:16755609 PMID:19965581 RGD:6484697 RGD:6484735 RGD:6893656 NCBI chrNW_004936540:1,600,673...1,626,573 JBrowse link
G Rbp2 retinol binding protein 2 ISO RGD PMID:12850148 PMID:19965581 RGD:6484697 RGD:6893656 NCBI chrNW_004936540:1,547,406...1,571,374 JBrowse link
G Rbp3 retinol binding protein 3 ISO RGD PMID:8282025 RGD:6893658 NCBI chrNW_004936554:7,329,155...7,340,434 JBrowse link
G Rbp4 retinol binding protein 4 enables ISO (MGI:3687059|PMID:12484775)
(PMID:9757135)
PMID:4708098
(PMID:571335)
RGD
MGI
UniProt
BHF-UCL
PMID:571335 PMID:4708098 PMID:9260907 PMID:9757135 PMID:12484775 MGI:3687059 RGD:11567252 RGD:6484695 NCBI chrNW_004936601:1,401,215...1,410,195 JBrowse link
thiamine pyrophosphate binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hacl1 2-hydroxyacyl-CoA lyase 1 enables ISO PMID:10468558
(PMID:21708296)
(PMID:10468558)
HGNC-UCL
UniProt
PMID:10468558 PMID:21708296 RGD:708588 NCBI chrNW_004936473:2,823,183...2,856,077 JBrowse link
G Ogdh oxoglutarate dehydrogenase enables ISO (PMID:24495017) UniProt PMID:24495017 NCBI chrNW_004936478:19,506,845...19,584,411 JBrowse link
G Tkt transketolase ISO RGD PMID:16116031 RGD:1580394 NCBI chrNW_004936473:3,950,846...3,978,778 JBrowse link
vitamin B6 binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Scly selenocysteine lyase enables ISO PMID:20164179 CAFA PMID:20164179 RGD:12793035 NCBI chrNW_004936525:381,188...407,544 JBrowse link
vitamin D binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gc GC vitamin D binding protein ISO RGD PMID:49052 RGD:2315532 NCBI chrNW_004936598:3,220,029...3,256,091 JBrowse link
G LOC101958591 cartilage oligomeric matrix protein ISO RGD PMID:12426368 RGD:1298777 NCBI chrNW_004936596:2,544,389...2,551,155 JBrowse link
G Vdr vitamin D receptor ISO RGD PMID:2829212 RGD:729973 NCBI chrNW_004936512:5,741,836...5,800,999 JBrowse link
vitamin E binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ttpa alpha tocopherol transfer protein enables ISO (MGI:5494336|PMID:23599266) RGD
UniProt
PMID:1569384 PMID:23599266 MGI:5494336 RGD:1600437 NCBI chrNW_004936496:10,409,948...10,466,722 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 14248
    binding 13491
      small molecule binding 824
        vitamin binding 67
          L-ascorbic acid binding 1
          biotin binding 4
          cobalamin binding 5
          folic acid binding 12
          phosphopantetheine binding 0
          retinal binding + 9
          retinol binding + 8
          thiamine binding 0
          thiamine pyrophosphate binding 3
          vitamin B6 binding + 19
          vitamin D binding + 4
          vitamin E binding 1
paths to the root