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ONTOLOGY REPORT - ANNOTATIONS


Term:vitamin binding
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Accession:GO:0019842 term browser browse the term
Definition:Binding to a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body.


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vitamin binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cblif cobalamin binding intrinsic factor TAS RGD PMID:3422425 RGD:61608 NCBI chr 1:208,605,983...208,620,231
Ensembl chr 1:208,605,983...208,620,344
JBrowse link
G Ggcx gamma-glutamyl carboxylase enables IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:12754193 PMID:21873635 RGD:1582507, RGD:13792537 NCBI chr 4:104,469,737...104,485,631
Ensembl chr 4:104,469,765...104,487,063
JBrowse link
G Pank3 pantothenate kinase 3 enables ISO (PMID:27555321) RGD PMID:27555321 NCBI chr10:20,229,129...20,252,955
Ensembl chr10:20,229,129...20,252,955
JBrowse link
G Pygl glycogen phosphorylase L enables ISO (PMID:12204691) RGD PMID:12204691 NCBI chr 6:88,697,598...88,740,260
Ensembl chr 6:88,697,593...88,740,310
JBrowse link
G Ttpa alpha tocopherol transfer protein IDA RGD PMID:8349655 RGD:730016 NCBI chr 5:33,497,537...33,518,936
Ensembl chr 5:33,497,137...33,518,073
JBrowse link
11-cis retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 enables ISO (PMID:23144455) RGD PMID:23144455 NCBI chr 2:210,164,813...210,302,069
Ensembl chr 2:210,164,813...210,302,069
JBrowse link
G Opn3 opsin 3 enables ISO (PMID:31097585) RGD PMID:31097585 NCBI chr13:87,589,330...87,619,847
Ensembl chr13:87,589,333...87,619,847
JBrowse link
G Opn4 opsin 4 enables ISO
ISS
(PMID:15674244)
GO_REF:0000024
RGD
UniProt
PMID:15674244 GO_REF:0000024 NCBI chr16:9,920,408...9,929,580
Ensembl chr16:9,920,491...10,005,711
JBrowse link
G Opn5 opsin 5 enables ISO (PMID:22043319)
(MGI:5582695|PMID:24403072), (MGI:6230806|PMID:22043319)
RGD PMID:22043319 PMID:24403072 MGI:5582695 MGI:6230806 NCBI chr 9:18,368,393...18,416,098
Ensembl chr 9:18,368,416...18,415,476
JBrowse link
G Rho rhodopsin enables ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
G Rlbp1 retinaldehyde binding protein 1 enables ISO (MGI:1097298|PMID:9326942) RGD PMID:9326942 MGI:1097298 NCBI chr 1:133,308,920...133,322,296
Ensembl chr 1:133,308,938...133,322,296
JBrowse link
all-trans retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 enables ISO (PMID:20404325), (PMID:29847635), (PMID:33375396) RGD PMID:20404325 PMID:29847635 PMID:33375396 NCBI chr 2:210,164,813...210,302,069
Ensembl chr 2:210,164,813...210,302,069
JBrowse link
G Adh4 alcohol dehydrogenase 4 (class II), pi polypeptide enables ISO (PMID:15369820) RGD PMID:15369820 NCBI chr 2:226,948,717...226,966,747 JBrowse link
G Cyp2w1 cytochrome P450, family 2, subfamily w, polypeptide 1 enables ISO (PMID:26936974) RGD PMID:26936974 NCBI chr12:15,291,552...15,296,421
Ensembl chr12:15,291,704...15,296,421
JBrowse link
G Opn3 opsin 3 enables ISO (PMID:31097585) RGD PMID:31097585 NCBI chr13:87,589,330...87,619,847
Ensembl chr13:87,589,333...87,619,847
JBrowse link
all-trans-retinol binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp2w1 cytochrome P450, family 2, subfamily w, polypeptide 1 enables ISO (PMID:26936974) RGD PMID:26936974 NCBI chr12:15,291,552...15,296,421
Ensembl chr12:15,291,704...15,296,421
JBrowse link
G Rbp1 retinol binding protein 1 enables ISO
ISS
(PMID:28057518)
GO_REF:0000024
RGD
UniProt
PMID:28057518 GO_REF:0000024 NCBI chr 8:99,025,218...99,046,740
Ensembl chr 8:99,025,206...99,046,743
JBrowse link
biotin binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acaca acetyl-CoA carboxylase alpha IDA RGD PMID:12949377 RGD:1601566 NCBI chr10:69,014,261...69,276,453
Ensembl chr10:69,014,170...69,276,457
JBrowse link
G Acacb acetyl-CoA carboxylase beta IDA RGD PMID:12949377 RGD:1601566 NCBI chr12:42,365,800...42,477,651
Ensembl chr12:42,366,548...42,457,655
JBrowse link
G Hlcs holocarboxylase synthetase enables ISO (PMID:14613969) RGD PMID:14613969 NCBI chr11:33,455,806...33,635,197
Ensembl chr11:33,455,809...33,624,222
JBrowse link
G Pc pyruvate carboxylase enables IMP
IEA
IDA
GO_REF:0000002 InterPro PMID:12949377 PMID:12949377 GO_REF:0000002, RGD:1601566, RGD:1601566 NCBI chr 1:201,799,374...201,898,412
Ensembl chr 1:201,804,267...201,898,380
JBrowse link
calcidiol binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gc GC, vitamin D binding protein enables ISO
IEA
(PMID:11799400)
GO_REF:0000107
RGD
Ensembl
PMID:11799400 GO_REF:0000107 NCBI chr14:18,632,146...18,667,563
Ensembl chr14:18,632,135...18,667,567
JBrowse link
calcitriol binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vdr vitamin D receptor enables IDA
IEA
ISO
GO_REF:0000107
(PMID:10678179), (PMID:12016314), (PMID:28698609)
Ensembl
RGD
PMID:10678179 PMID:12016314 PMID:28698609 PMID:8179318 GO_REF:0000107, RGD:8158087 NCBI chr 7:128,987,981...129,037,677
Ensembl chr 7:128,987,981...129,037,677
JBrowse link
cobalamin binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cblif cobalamin binding intrinsic factor enables IDA
IEA
ISO
IBA
GO_REF:0000107
(PMID:14695536)
PMID:21873635
Ensembl
RGD
PMID:14695536 PMID:7150665 PMID:21873635 GO_REF:0000107, RGD:1624372, RGD:13792537 NCBI chr 1:208,605,983...208,620,231
Ensembl chr 1:208,605,983...208,620,344
JBrowse link
G Cd320 CD320 molecule enables ISO (PMID:18779389) RGD PMID:18779389 NCBI chr 7:14,626,171...14,631,976
Ensembl chr 7:14,609,146...14,631,976
JBrowse link
G Cubn cubilin enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:76,385,046...76,593,133
Ensembl chr17:76,385,060...76,593,231
JBrowse link
G Lmbrd1 LMBR1 domain containing 1 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:27,096,387...27,178,095
Ensembl chr 9:27,096,297...27,178,090
JBrowse link
G Mmab metabolism of cobalamin associated B enables ISO (PMID:28497574) RGD PMID:28497574 NCBI chr12:42,159,109...42,172,496
Ensembl chr12:42,159,089...42,172,490
JBrowse link
G Mmachc metabolism of cobalamin associated C enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:130,166,056...130,172,735
Ensembl chr 5:130,166,451...130,172,601
JBrowse link
G Mmut methylmalonyl-CoA mutase enables ISO (PMID:1978672), (PMID:20876572), (PMID:21138732), (PMID:28943303) RGD PMID:1978672 PMID:20876572 PMID:21138732 PMID:28943303 NCBI chr 9:19,928,720...19,956,985
Ensembl chr 9:19,928,727...19,957,046
JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase enables TAS
IEA
GO_REF:0000104 UniProt PMID:15845641 GO_REF:0000104, RGD:1359026 NCBI chr17:58,219,998...58,308,560
Ensembl chr17:58,220,071...58,304,822
JBrowse link
G Tcn2 transcobalamin 2 enables IDA
IBA
ISO
IEA
PMID:21873635
(PMID:16537422), (PMID:27411955), (PMID:8443384)
GO_REF:0000107
RGD
Ensembl
PMID:8443384 PMID:16537422 PMID:27411955 PMID:11287214 PMID:21873635 GO_REF:0000107, RGD:1601485, RGD:13792537 NCBI chr14:78,813,343...78,828,549
Ensembl chr14:78,813,343...78,828,489
JBrowse link
D3 vitamins binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp2r1 cytochrome P450, family 2, subfamily r, polypeptide 1 enables ISO (PMID:18511070) RGD PMID:18511070 NCBI chr 1:168,749,302...168,798,079
Ensembl chr 1:168,751,038...168,797,759
JBrowse link
folic acid binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhfr dihydrofolate reductase enables ISO (PMID:2303423) RGD PMID:2303423 NCBI chr 2:23,585,876...23,611,199
Ensembl chr 2:23,586,031...23,613,713
JBrowse link
G Dmgdh dimethylglycine dehydrogenase IDA RGD PMID:6159630 PMID:6163778 RGD:1599787, RGD:7245485 NCBI chr 2:24,912,600...24,987,533
Ensembl chr 2:24,912,578...24,987,528
JBrowse link
G Folr1 folate receptor alpha enables IDA
ISO
(PMID:10787414), (PMID:14722620), (PMID:23851396), (PMID:2527252) RGD PMID:2527252 PMID:10787414 PMID:14722620 PMID:23851396 PMID:10751329 RGD:1358236 NCBI chr 1:156,219,460...156,238,436
Ensembl chr 1:156,219,460...156,230,667
JBrowse link
G Folr2 folate receptor beta enables ISO (PMID:19116913), (PMID:25015955), (PMID:4066659) RGD PMID:4066659 PMID:19116913 PMID:25015955 NCBI chr 1:156,200,044...156,218,380
Ensembl chr 1:156,200,060...156,205,724
JBrowse link
G Ftcd formimidoyltransferase cyclodeaminase enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:12,055,203...12,068,717
Ensembl chr20:12,055,208...12,068,735
JBrowse link
G Gnmt glycine N-methyltransferase TAS
IDA
RGD PMID:8278367 PMID:17158459 RGD:1545057, RGD:7242951 NCBI chr 9:14,254,675...14,258,028
Ensembl chr 9:14,254,675...14,258,434
JBrowse link
G Izumo1r IZUMO1 receptor, JUNO NOT|enables ISO (MGI:5568137|PMID:24739963) RGD PMID:24739963 MGI:5568137 NCBI chr 8:11,744,383...11,746,872
Ensembl chr 8:11,725,863...11,748,465
JBrowse link
G Mthfs methenyltetrahydrofolate synthetase enables ISO (PMID:19738041), (PMID:7766710) RGD PMID:7766710 PMID:19738041 NCBI chr 8:89,729,498...89,801,998
Ensembl chr 8:89,729,508...89,799,089
JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase IDA RGD PMID:11730351 RGD:1601423 NCBI chr17:58,219,998...58,308,560
Ensembl chr17:58,220,071...58,304,822
JBrowse link
G Sardh sarcosine dehydrogenase IDA RGD PMID:6163778 RGD:7245485 NCBI chr 3:10,510,553...10,575,342
Ensembl chr 3:10,510,553...10,573,874
JBrowse link
G Slc19a1 solute carrier family 19 member 1 enables IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:11600421 PMID:21873635 RGD:735239, RGD:13792537 NCBI chr20:11,584,410...11,602,429
Ensembl chr20:11,584,411...11,601,972
JBrowse link
G Slc46a1 solute carrier family 46 member 1 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:63,361,504...63,367,940
Ensembl chr10:63,361,486...63,368,848
JBrowse link
G Tyms thymidylate synthetase IDA RGD PMID:7537805 RGD:2317419 NCBI chr 9:113,313,454...113,329,551
Ensembl chr 9:113,313,452...113,329,536
JBrowse link
G Uros uroporphyrinogen III synthase IDA RGD PMID:6466301 RGD:2303402 NCBI chr 1:188,490,832...188,513,659
Ensembl chr 1:188,490,323...188,512,249
JBrowse link
L-ascorbic acid binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07004992.1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 1:160,266,806...160,267,183 JBrowse link
G Dbh dopamine beta-hydroxylase enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:10,488,260...10,505,245
Ensembl chr 3:10,488,260...10,505,248
JBrowse link
G Egln1 egl-9 family hypoxia-inducible factor 1 enables IEA GO_REF:0000043
GO_REF:0000002
UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chr19:52,867,914...52,907,169 JBrowse link
G Egln2 egl-9 family hypoxia-inducible factor 2 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:82,451,554...82,459,809
Ensembl chr 1:82,451,555...82,459,751
JBrowse link
G Egln3 egl-9 family hypoxia-inducible factor 3 enables IEA GO_REF:0000043
GO_REF:0000002
UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chr 6:71,650,297...71,675,766
Ensembl chr 6:71,650,297...71,675,766
JBrowse link
G Ogfod1 2-oxoglutarate and iron-dependent oxygenase domain containing 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:10,948,778...10,974,566
Ensembl chr19:10,946,018...10,975,119
JBrowse link
G Ogfod2 2-oxoglutarate and iron-dependent oxygenase domain containing 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr12:32,482,377...32,485,687
Ensembl chr12:32,482,377...32,485,673
JBrowse link
G Ogfod3 2-oxoglutarate and iron-dependent oxygenase domain containing 3 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:106,452,334...106,480,632
Ensembl chr10:106,452,329...106,480,134
JBrowse link
G P3h1 prolyl 3-hydroxylase 1 enables IEA GO_REF:0000002
GO_REF:0000043
InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chr 5:132,841,868...132,856,664
Ensembl chr 5:132,841,928...132,856,659
JBrowse link
G P3h2 prolyl 3-hydroxylase 2 enables IEA GO_REF:0000002
GO_REF:0000043
InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chr11:74,634,267...74,775,422
Ensembl chr11:74,634,267...74,775,421
JBrowse link
G P3h3 prolyl 3-hydroxylase 3 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:157,646,238...157,662,035 JBrowse link
G P4ha1 prolyl 4-hydroxylase subunit alpha 1 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:27,302,046...27,352,098
Ensembl chr20:27,302,141...27,352,786
JBrowse link
G P4ha2 prolyl 4-hydroxylase subunit alpha 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:38,243,047...38,271,989
Ensembl chr10:38,243,139...38,287,314
JBrowse link
G P4ha3 prolyl 4-hydroxylase subunit alpha 3 enables IEA GO_REF:0000043
GO_REF:0000002
UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chr 1:154,628,723...154,663,779
Ensembl chr 1:154,628,736...154,663,775
JBrowse link
G P4htm prolyl 4-hydroxylase, transmembrane enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:109,274,629...109,292,802
Ensembl chr 8:109,274,626...109,292,473
JBrowse link
G Pam peptidylglycine alpha-amidating monooxygenase enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:97,998,581...98,271,966
Ensembl chr 9:98,122,916...98,271,965
JBrowse link
G Phyh phytanoyl-CoA 2-hydroxylase enables ISO (PMID:10744784) RGD PMID:10744784 NCBI chr17:73,329,461...73,346,359
Ensembl chr17:73,329,082...73,346,409
JBrowse link
G Plod1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 enables IMP
IEA
GO_REF:0000002 InterPro PMID:11714250 GO_REF:0000002, RGD:1599090 NCBI chr 5:158,340,674...158,367,581
Ensembl chr 5:158,340,490...158,367,620
JBrowse link
G Plod2 procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 enables IEA GO_REF:0000043
GO_REF:0000002
UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chr 8:93,084,548...93,167,255
Ensembl chr 8:93,084,513...93,167,255
JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:19,676,384...19,686,945
Ensembl chr12:19,676,386...19,686,960
JBrowse link
phosphopantetheine binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fasn fatty acid synthase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:106,072,093...106,090,259
Ensembl chr10:106,072,091...106,090,261
JBrowse link
pyridoxal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal kinase IDA RGD PMID:6255956 RGD:2303024 NCBI chr20:10,210,393...10,231,937
Ensembl chr20:10,210,289...10,232,110
JBrowse link
pyridoxal phosphate binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07028989.1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002
G Aadat aminoadipate aminotransferase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:29,509,392...29,544,332
Ensembl chr16:29,509,394...29,544,332
JBrowse link
G Abat 4-aminobutyrate aminotransferase enables ISS
ISO
IBA
GO_REF:0000024
(PMID:6470007)
(PMID:15650327)
PMID:21873635
UniProt
RGD
PMID:6470007 PMID:15650327 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:6,996,688...7,092,835
Ensembl chr10:6,999,819...7,092,835
JBrowse link
G Accs 1-aminocyclopropane-1-carboxylate synthase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:79,805,254...79,820,830
Ensembl chr 3:79,806,587...79,820,835
JBrowse link
G Accsl 1-aminocyclopropane-1-carboxylate synthase-like enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:79,826,464...79,841,163
Ensembl chr 3:79,826,464...79,841,163
JBrowse link
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase enables ISO (PMID:15802217), (PMID:17696873), (PMID:20133649) RGD PMID:15802217 PMID:17696873 PMID:20133649 NCBI chr 9:93,675,384...93,685,337
Ensembl chr 9:93,675,384...93,685,336
JBrowse link
G Agxt2 alanine-glyoxylate aminotransferase 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:59,336,252...59,377,664
Ensembl chr 2:59,336,283...59,377,926
JBrowse link
G Alas1 5'-aminolevulinate synthase 1 enables IEA GO_REF:0000104
GO_REF:0000002
UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 NCBI chr 8:106,876,514...106,889,852
Ensembl chr 8:106,876,514...106,889,917
JBrowse link
G Alas2 5'-aminolevulinate synthase 2 enables IEA GO_REF:0000002
GO_REF:0000104
InterPro
UniProt
GO_REF:0000002 GO_REF:0000104 NCBI chr  X:19,463,146...19,486,526
Ensembl chr  X:19,463,171...19,486,519
JBrowse link
G Alb albumin enables ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:16201370)
UniProt
Ensembl
RGD
PMID:16201370 GO_REF:0000024 GO_REF:0000107 NCBI chr14:17,607,397...17,622,814
Ensembl chr14:17,607,381...17,622,836
JBrowse link
G Cbs cystathionine beta synthase enables TAS
ISS
ISO
GO_REF:0000024
(PMID:18776696), (PMID:7929220)
UniProt
RGD
PMID:7929220 PMID:18776696 PMID:10801907 GO_REF:0000024, RGD:1359025 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764
JBrowse link
G Csad cysteine sulfinic acid decarboxylase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:133,308,571...133,337,914
Ensembl chr 7:133,308,574...133,337,615
JBrowse link
G Cth cystathionine gamma-lyase enables TAS
ISO
IBA
IEA
ISS
(PMID:10212249), (PMID:19019829)
PMID:21873635
GO_REF:0000002
GO_REF:0000024
RGD
InterPro
UniProt
PMID:10212249 PMID:19019829 PMID:10801907 PMID:21873635 GO_REF:0000002 GO_REF:0000024, RGD:1359025, RGD:13792537 NCBI chr 2:246,975,888...247,002,234
Ensembl chr 2:246,975,894...247,002,234
JBrowse link
G Ddc dopa decarboxylase enables TAS
IEA
IDA
GO_REF:0000002 InterPro PMID:7567987 PMID:8422386 GO_REF:0000002, RGD:727686, RGD:4139896 NCBI chr14:86,378,685...86,469,189
Ensembl chr14:86,378,685...86,469,208
JBrowse link
G Etnppl ethanolamine-phosphate phospho-lyase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:219,173,048...219,194,646
Ensembl chr 2:219,172,978...219,192,212
JBrowse link
G Gad1 glutamate decarboxylase 1 enables IDA
IEA
GO_REF:0000002 InterPro PMID:1880546 GO_REF:0000002, RGD:6480263 NCBI chr 3:55,369,704...55,410,335
Ensembl chr 3:55,369,704...55,410,333
JBrowse link
G Gad2 glutamate decarboxylase 2 IDA RGD PMID:1880546 RGD:6480263 NCBI chr17:84,763,630...84,826,155
Ensembl chr17:84,763,628...84,826,155
JBrowse link
G Gcat glycine C-acetyltransferase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:110,595,126...110,601,474
Ensembl chr 7:110,595,091...110,601,473
JBrowse link
G Gldc glycine decarboxylase enables IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:6778858 PMID:21873635 RGD:1642728, RGD:13792537 NCBI chr 1:227,883,247...227,962,119
Ensembl chr 1:227,883,249...227,962,097
JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:242,357,293...242,381,535
Ensembl chr 1:242,357,306...242,380,633
JBrowse link
G Got1l1 glutamic-oxaloacetic transaminase 1-like 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:64,860,308...64,873,656
Ensembl chr16:64,860,704...64,866,162
JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 IDA
IMP
RGD PMID:14522984 PMID:12686151 RGD:1582383, RGD:2289396 NCBI chr19:9,174,304...9,199,995
Ensembl chr19:9,174,311...9,199,994
JBrowse link
G Gpt glutamic--pyruvic transaminase NAS RGD PMID:2043642 RGD:1625222 NCBI chr 7:108,416,646...108,419,495
Ensembl chr 7:108,416,642...108,419,494
JBrowse link
G Gpt2 glutamic--pyruvic transaminase 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:21,526,800...21,561,314
Ensembl chr19:21,517,621...21,560,610
JBrowse link
G Hdc histidine decarboxylase enables IDA
IEA
GO_REF:0000002 InterPro PMID:4449071 PMID:9525922 PMID:12204113 PMID:14622303 PMID:7075603 More... GO_REF:0000002, RGD:2303726, RGD:2303735, RGD:2303734, RGD:2303733, RGD:2303728, RGD:2303727 NCBI chr 3:113,847,256...113,865,334
Ensembl chr 3:113,847,260...113,865,341
JBrowse link
G Kyat1 kynurenine aminotransferase 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:13,459,598...13,493,308
Ensembl chr 3:13,459,591...13,493,355
JBrowse link
G Kyat3 kynurenine aminotransferase 3 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:231,701,881...231,747,462
Ensembl chr 2:231,701,963...231,747,227
JBrowse link
G Kynu kynureninase IDA RGD PMID:7451426 RGD:2290547 NCBI chr 3:27,778,646...27,929,470
Ensembl chr 3:27,778,772...27,929,488
JBrowse link
G LOC100910481 MOSC domain-containing protein 2, mitochondrial-like enables IEA GO_REF:0000002 InterPro GO_REF:0000002
G Mocos molybdenum cofactor sulfurase enables IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr18:15,931,654...15,977,415
Ensembl chr18:15,931,654...15,977,187
JBrowse link
G Mtarc1 mitochondrial amidoxime reducing component 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:96,324,377...96,362,677 JBrowse link
G Mtarc2 mitochondrial amidoxime reducing component 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:96,362,810...96,397,284 JBrowse link
G Nfs1 NFS1 cysteine desulfurase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:144,637,309...144,659,660
Ensembl chr 3:144,637,309...144,659,666
JBrowse link
G Oat ornithine aminotransferase enables IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:187,347,862...187,367,644
Ensembl chr 1:187,347,865...187,367,682
JBrowse link
G Pdxdc1 pyridoxal-dependent decarboxylase domain containing 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:2,025,056...2,113,712
Ensembl chr10:2,025,360...2,113,520
JBrowse link
G Phykpl 5-phosphohydroxy-L-lysine phospho-lyase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:35,839,965...35,863,631
Ensembl chr10:35,839,983...35,859,508
JBrowse link
G Plpbp pyridoxal phosphate binding protein enables IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:65,003,292...65,014,886
Ensembl chr16:65,002,223...65,014,886
JBrowse link
G Pnpo pyridoxamine 5'-phosphate oxidase enables ISO (PMID:12824491) RGD PMID:12824491 NCBI chr10:81,924,584...81,930,844
Ensembl chr10:81,924,569...81,930,871
JBrowse link
G Psat1 phosphoserine aminotransferase 1 enables IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:213,196,709...213,218,564
Ensembl chr 1:213,196,709...213,218,682
JBrowse link
G Pygb glycogen phosphorylase B enables IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 3:139,611,724...139,658,521
Ensembl chr 3:139,611,749...139,663,553
JBrowse link
G Pygl glycogen phosphorylase L enables IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:88,697,598...88,740,260
Ensembl chr 6:88,697,593...88,740,310
JBrowse link
G Pygm glycogen phosphorylase, muscle associated enables IDA
IBA
IEA
PMID:21873635
GO_REF:0000002
InterPro PMID:11692172 PMID:21873635 GO_REF:0000002, RGD:1599897, RGD:13792537 NCBI chr 1:203,690,550...203,705,369
Ensembl chr 1:203,690,533...203,705,368
JBrowse link
G Sds serine dehydratase enables IEA
ISO
GO_REF:0000107
(PMID:15689518)
Ensembl
RGD
PMID:15689518 GO_REF:0000107 NCBI chr12:36,083,226...36,090,540
Ensembl chr12:36,083,229...36,088,203
JBrowse link
G Sgpl1 sphingosine-1-phosphate lyase 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:29,047,793...29,094,209
Ensembl chr20:29,047,796...29,094,084
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 enables TAS
ISO
IBA
IDA
(PMID:17482557), (PMID:24698160)
PMID:21873635
RGD PMID:17482557 PMID:24698160 PMID:15671219 PMID:21873635 PMID:3110140 RGD:1359815, RGD:13792537, RGD:2300383 NCBI chr10:45,468,698...45,497,820
Ensembl chr10:45,468,700...45,497,820
JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 enables TAS
ISO
IBA
IDA
(PMID:25619277)
PMID:21873635
RGD PMID:25619277 PMID:15671219 PMID:21873635 PMID:3110140 RGD:1359815, RGD:13792537, RGD:2300383 NCBI chr 7:63,358,961...63,364,293
Ensembl chr 7:63,358,961...63,364,236
JBrowse link
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:11,877,249...11,916,295
Ensembl chr17:11,877,249...11,916,295
JBrowse link
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:106,948,681...107,031,584
Ensembl chr 6:106,950,949...107,031,542
JBrowse link
G Sptlc3 serine palmitoyltransferase, long chain base subunit 3 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:126,847,878...126,978,010
Ensembl chr 3:126,847,878...126,978,010
JBrowse link
G Srr serine racemase enables IDA
ISO
IBA
(MGI:1347751|PMID:10557334)
PMID:20106978
(PMID:20106978)
PMID:21873635
RGD PMID:10557334 PMID:20106978 PMID:9892700 PMID:20106978 PMID:21873635 MGI:1347751, RGD:2302218, RGD:8554326, RGD:13792537 NCBI chr10:59,769,563...59,786,688
Ensembl chr10:59,769,571...59,787,011
JBrowse link
G Tat tyrosine aminotransferase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:37,947,153...37,957,717
Ensembl chr19:37,947,112...37,958,031
JBrowse link
G Thnsl2 threonine synthase-like 2 enables IBA
ISO
PMID:21873635
(MGI:3690523|PMID:17034760)
RGD PMID:17034760 PMID:21873635 MGI:3690523, RGD:13792537 NCBI chr 4:103,112,974...103,132,122
Ensembl chr 4:103,112,963...103,132,017
JBrowse link
retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1b10 aldo-keto reductase family 1 member B10 IDA RGD PMID:20709016 RGD:6903952 NCBI chr 4:63,038,459...63,060,336
Ensembl chr 4:63,040,169...63,053,852
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 IDA RGD PMID:8663198 RGD:724800 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107
JBrowse link
G Crabp1 cellular retinoic acid binding protein 1 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:55,138,363...55,159,360
Ensembl chr 8:55,151,285...55,159,360
JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:173,417,004...173,421,352
Ensembl chr 2:173,416,857...173,421,379
JBrowse link
G Rbp1 retinol binding protein 1 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:99,025,218...99,046,740
Ensembl chr 8:99,025,206...99,046,743
JBrowse link
G Rbp2 retinol binding protein 2 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:99,079,293...99,104,489
Ensembl chr 8:99,079,104...99,104,473
JBrowse link
G Rbp4 retinol binding protein 4 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399
JBrowse link
G Rho rhodopsin IDA 9-cis retinaldehyde
9-cis and 11-cis retinal
RGD PMID:2525480 PMID:8814134 RGD:6893558, RGD:6893595 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:58,549,743...58,568,861
Ensembl chr 8:58,549,736...58,568,860
JBrowse link
retinol binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh4 alcohol dehydrogenase 4 (class II), pi polypeptide enables ISO (PMID:10407146) RGD PMID:10407146 NCBI chr 2:226,948,717...226,966,747 JBrowse link
G Adh7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide enables IDA
ISO
(PMID:9228021) RGD PMID:9228021 PMID:10829036 RGD:631904 NCBI chr 2:226,748,724...226,763,183
Ensembl chr 2:226,741,788...226,763,182
JBrowse link
G Crabp1 cellular retinoic acid binding protein 1 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:55,138,363...55,159,360
Ensembl chr 8:55,151,285...55,159,360
JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:173,417,004...173,421,352
Ensembl chr 2:173,416,857...173,421,379
JBrowse link
G Lrat lecithin retinol acyltransferase IDA RGD PMID:8460936 PMID:2253789 PMID:9244401 RGD:1599831, RGD:1599829, RGD:1599832 NCBI chr 2:168,264,093...168,273,155
Ensembl chr 2:168,266,877...168,273,619
JBrowse link
G Rbp1 retinol binding protein 1 IDA RGD PMID:19965581 PMID:12850148 PMID:16755609 RGD:6484697, RGD:6893656, RGD:6484735 NCBI chr 8:99,025,218...99,046,740
Ensembl chr 8:99,025,206...99,046,743
JBrowse link
G Rbp2 retinol binding protein 2 TAS
IDA
RGD PMID:3029082 PMID:12850148 PMID:19965581 RGD:729693, RGD:6893656, RGD:6484697 NCBI chr 8:99,079,293...99,104,489
Ensembl chr 8:99,079,104...99,104,473
JBrowse link
G Rbp3 retinol binding protein 3 enables IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:8282025 PMID:21873635 RGD:6893658, RGD:13792537 NCBI chr16:9,267,538...9,276,006
Ensembl chr16:9,267,538...9,276,006
JBrowse link
G Rbp4 retinol binding protein 4 enables IDA
ISO
IBA
(MGI:3687059|PMID:12484775)
PMID:21873635
(PMID:9757135)
(PMID:571335)
PMID:4708098
RGD PMID:571335 PMID:9757135 PMID:12484775 PMID:9260907 PMID:21873635 More... MGI:3687059, RGD:6484695, RGD:13792537, RGD:11567252 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:58,549,743...58,568,861
Ensembl chr 8:58,549,736...58,568,860
JBrowse link
thiamine binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tpk1 thiamin pyrophosphokinase 1 enables IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 4:72,170,134...72,557,707
Ensembl chr 4:72,170,134...72,557,694
JBrowse link
thiamine pyrophosphate binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC141220.4 enables IEA GO_REF:0000002 InterPro GO_REF:0000002
G Dhtkd1 dehydrogenase E1 and transketolase domain containing 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:72,355,201...72,406,725
Ensembl chr17:72,355,201...72,406,723
JBrowse link
G Hacl1 2-hydroxyacyl-CoA lyase 1 enables IDA
IBA
ISO
PMID:10468558
PMID:21873635
(PMID:10468558), (PMID:21708296)
RGD PMID:10468558 PMID:21708296 PMID:10468558 PMID:21873635 RGD:708588, RGD:13792537 NCBI chr16:6,826,881...6,863,027
Ensembl chr16:6,824,906...6,863,027
JBrowse link
G Ilvbl ilvB acetolactate synthase like enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:11,039,870...11,049,924
Ensembl chr 7:11,039,871...11,049,924
JBrowse link
G Ogdh oxoglutarate dehydrogenase enables ISO
ISS
(PMID:24495017)
GO_REF:0000024
RGD
UniProt
PMID:24495017 GO_REF:0000024 NCBI chr14:81,150,021...81,217,479
Ensembl chr14:81,150,091...81,217,479
JBrowse link
G Ogdhl oxoglutarate dehydrogenase L enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:7,578,305...7,604,385
Ensembl chr16:7,578,367...7,604,386
JBrowse link
G Tkt transketolase enables IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:16116031 PMID:21873635 RGD:1580394, RGD:13792537 NCBI chr16:5,723,764...5,748,702
Ensembl chr16:5,723,762...5,748,698
JBrowse link
G Tktl1 transketolase-like 1 enables IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:151,954,261...151,987,208
Ensembl chr  X:151,954,175...151,987,208
JBrowse link
G Tktl2 transketolase-like 2 enables IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:23,202,460...23,209,741
Ensembl chr16:23,202,453...23,209,742
JBrowse link
vitamin B6 binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Scly selenocysteine lyase enables IDA PMID:20164179 CAFA PMID:20164179 RGD:12793035 NCBI chr 9:91,890,269...91,910,947
Ensembl chr 9:91,890,306...91,910,941
JBrowse link
vitamin D binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Calb1 calbindin 1 enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:29,375,624...29,402,532
Ensembl chr 5:29,375,642...29,402,431
JBrowse link
G Comp cartilage oligomeric matrix protein IMP RGD PMID:12426368 RGD:1298777 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845
JBrowse link
G Gc GC, vitamin D binding protein enables TAS
IBA
IDA
PMID:21873635 RGD
GO_Central
PMID:9774468 PMID:21873635 PMID:49052 RGD:731145, RGD:13792537, RGD:2315532 NCBI chr14:18,632,146...18,667,563
Ensembl chr14:18,632,135...18,667,567
JBrowse link
G S100g S100 calcium binding protein G enables IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:31,705,853...31,708,422
Ensembl chr  X:31,705,866...31,708,433
JBrowse link
G Vdr vitamin D receptor IMP
IDA
RGD PMID:2829212 PMID:2829212 RGD:729973, RGD:729973 NCBI chr 7:128,987,981...129,037,677
Ensembl chr 7:128,987,981...129,037,677
JBrowse link
vitamin E binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afm afamin enables ISS
IBA
ISO
IEA
GO_REF:0000024
PMID:21873635
CHEBI:18145|CHEBI:18185 (PMID:12463752), (PMID:15952736)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:12463752 PMID:15952736 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr14:17,531,026...17,563,868
Ensembl chr14:17,531,024...17,563,870
JBrowse link
G Ttpa alpha tocopherol transfer protein enables IDA
ISO
IBA
(MGI:5494336|PMID:23599266)
PMID:21873635
RGD PMID:23599266 PMID:1569384 PMID:21873635 MGI:5494336, RGD:1600437, RGD:13792537 NCBI chr 5:33,497,537...33,518,936
Ensembl chr 5:33,497,137...33,518,073
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19979
    binding 17009
      small molecule binding 2508
        vitamin binding 140
          L-ascorbic acid binding 20
          biotin binding 4
          cobalamin binding 9
          folic acid binding 14
          phosphopantetheine binding 1
          retinal binding + 16
          retinol binding + 11
          thiamine binding 1
          thiamine pyrophosphate binding 9
          vitamin B6 binding + 54
          vitamin D binding + 6
          vitamin E binding 2
paths to the root