Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:vitamin binding
go back to main search page
Accession:GO:0019842 term browser browse the term
Definition:Binding to a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body.


show annotations for term's descendants           Sort by:
vitamin binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GGCX gamma-glutamyl carboxylase enables ISO
IEA		 RGD
TreeGrafter		 PMID:12754193 GO_REF:0000118 RGD:1582507 NCBI chr17:39,512,293...39,525,251
Ensembl chr17:39,512,387...39,529,121 		JBrowse link
G PANK3 pantothenate kinase 3 enables IEA Ensembl GO_REF:0000107 NCBI chr 4:43,168,407...43,192,451
Ensembl chr 4:43,137,709...43,186,022 		JBrowse link
G PYGL glycogen phosphorylase L enables IEA Ensembl GO_REF:0000107 NCBI chr 8:27,264,778...27,307,977
Ensembl chr 8:27,223,273...27,307,977 		JBrowse link
G TTPA alpha tocopherol transfer protein ISO RGD PMID:8349655 RGD:730016 NCBI chr29:13,177,690...13,198,910
Ensembl chr29:13,182,308...13,192,553 		JBrowse link
11-cis retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:55,058,361...55,186,255
Ensembl chr 6:55,058,361...55,186,253 		JBrowse link
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 enables ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr19:23,374,295...23,400,054 JBrowse link
G OPN3 opsin 3 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:32,995,047...33,040,873
Ensembl chr 7:32,996,938...33,040,876 		JBrowse link
G OPN4 opsin 4 enables IEA Ensembl GO_REF:0000107 NCBI chr 4:34,350,058...34,365,410
Ensembl chr 4:34,355,128...34,365,215 		JBrowse link
G OPN5 opsin 5 enables IEA Ensembl GO_REF:0000107 NCBI chr12:15,831,311...15,858,121
Ensembl chr12:15,831,311...15,877,721 		JBrowse link
G RHO rhodopsin enables ISS UniProt GO_REF:0000024 NCBI chr20:5,630,735...5,638,906 JBrowse link
G RLBP1 retinaldehyde binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 3:52,260,872...52,282,532
Ensembl chr 3:52,260,944...52,282,134 		JBrowse link
all-trans retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:55,058,361...55,186,255
Ensembl chr 6:55,058,361...55,186,253 		JBrowse link
G ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide enables IEA Ensembl GO_REF:0000107 NCBI chr32:21,282,526...21,299,387
Ensembl chr32:21,282,890...21,299,328 		JBrowse link
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 enables ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr19:23,374,295...23,400,054 JBrowse link
G CYP2W1 cytochrome P450 family 2 subfamily W member 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:15,883,248...15,889,508
Ensembl chr 6:15,881,636...15,889,186 		JBrowse link
G OPN3 opsin 3 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:32,995,047...33,040,873
Ensembl chr 7:32,996,938...33,040,876 		JBrowse link
all-trans-retinol binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 enables ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr19:23,374,295...23,400,054 JBrowse link
G CYP2W1 cytochrome P450 family 2 subfamily W member 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:15,883,248...15,889,508
Ensembl chr 6:15,881,636...15,889,186 		JBrowse link
G RBP1 retinol binding protein 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr23:35,677,844...35,698,194
Ensembl chr23:35,679,176...35,698,363 		JBrowse link
biotin binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACACA acetyl-CoA carboxylase alpha ISO RGD PMID:12949377 RGD:1601566 NCBI chr 9:36,904,204...37,188,096
Ensembl chr 9:36,905,293...37,187,892 		JBrowse link
G ACACB acetyl-CoA carboxylase beta ISO RGD PMID:12949377 RGD:1601566 NCBI chr26:17,763,531...17,895,319
Ensembl chr26:17,747,362...17,894,400 		JBrowse link
G HLCS holocarboxylase synthetase enables IEA Ensembl GO_REF:0000107 NCBI chr31:31,934,796...32,159,866
Ensembl chr31:31,937,087...32,150,861 		JBrowse link
G PC pyruvate carboxylase ISO RGD PMID:12949377 RGD:1601566 NCBI chr18:50,406,994...50,507,677
Ensembl chr18:50,412,272...50,507,669 		JBrowse link
calcidiol binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GC GC vitamin D binding protein enables IEA Ensembl GO_REF:0000107 NCBI chr13:60,795,305...60,828,038
Ensembl chr13:60,795,305...60,827,929 		JBrowse link
calcitriol binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VDR vitamin D receptor enables ISO
IEA		 RGD
Ensembl		 PMID:8179318 GO_REF:0000107 RGD:8158087 NCBI chr27:6,852,915...6,909,466
Ensembl chr27:6,852,723...6,909,470 		JBrowse link
cobalamin binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CBLIF cobalamin binding intrinsic factor enables ISO
IBA
IEA		 RGD
GO_Central
TreeGrafter
InterPro		 PMID:7150665 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 RGD:1624372 NCBI chr21:50,334,769...50,350,598
Ensembl chr21:50,334,769...50,350,598 		JBrowse link
G CD320 CD320 molecule enables IEA Ensembl GO_REF:0000107 NCBI chr20:52,886,087...52,890,361
Ensembl chr20:52,886,087...52,890,366 		JBrowse link
G CUBN cubilin enables IEA UniProt GO_REF:0000043 NCBI chr 2:19,784,125...20,041,840
Ensembl chr 2:19,784,198...20,041,839 		JBrowse link
G LMBRD1 LMBR1 domain containing 1 enables IEA UniProt GO_REF:0000043 NCBI chr12:32,274,056...32,383,737
Ensembl chr12:32,274,412...32,383,578 		JBrowse link
G LOC119878488 transcobalamin-1-like enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118
G LOC119878489 cobalamin binding intrinsic factor enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118
G MMAB metabolism of cobalamin associated B enables IEA Ensembl GO_REF:0000107 NCBI chr26:17,519,158...17,531,200
Ensembl chr26:17,519,199...17,529,514 		JBrowse link
G MMACHC metabolism of cobalamin associated C enables IEA UniProt GO_REF:0000043 NCBI chr15:14,857,236...14,863,211
Ensembl chr15:14,857,231...14,863,113 		JBrowse link
G MMUT methylmalonyl-CoA mutase enables IEA InterPro
TreeGrafter
UniProt
Ensembl		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chr12:17,306,074...17,339,921
Ensembl chr12:17,307,522...17,339,897 		JBrowse link
G MTR 5-methyltetrahydrofolate-homocysteine methyltransferase enables IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 NCBI chr 4:3,219,851...3,328,000
Ensembl chr 4:3,215,090...3,328,115 		JBrowse link
G TCN1 transcobalamin 1 enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr21:50,356,333...50,369,215
Ensembl chr21:50,356,340...50,369,181 		JBrowse link
G TCN2 transcobalamin 2 enables ISO
IEA		 RGD
TreeGrafter
Ensembl
InterPro		 PMID:11287214 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:1601485 NCBI chr26:23,693,664...23,710,342
Ensembl chr26:23,693,773...23,709,832 		JBrowse link
D3 vitamins binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP2R1 cytochrome P450 family 2 subfamily R member 1 enables ISO (PMID:18511070) UniProt PMID:18511070 NCBI chr21:37,553,883...37,579,744
Ensembl chr21:37,552,732...37,606,725 		JBrowse link
folic acid binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHFR dihydrofolate reductase enables ISO (PMID:2303423) BHF-UCL PMID:2303423 NCBI chr 3:26,521,214...26,556,065 JBrowse link
G DMGDH dimethylglycine dehydrogenase ISO RGD PMID:6159630 PMID:6163778 RGD:1599787 RGD:7245485 NCBI chr 3:27,789,089...27,857,348
Ensembl chr 3:27,790,324...27,856,601 		JBrowse link
G FTCD formimidoyltransferase cyclodeaminase enables IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr31:39,451,557...39,464,249
Ensembl chr31:39,275,159...39,464,715 		JBrowse link
G GNMT glycine N-methyltransferase enables ISO
IEA		 RGD
UniProt		 PMID:17158459 GO_REF:0000043 RGD:7242951 NCBI chr12:11,500,363...11,503,075
Ensembl chr12:11,500,392...11,503,481 		JBrowse link
G IZUMO1R IZUMO1 receptor, JUNO NOT|enables ISO (MGI:5568137|PMID:24739963) UniProt PMID:24739963 MGI:5568137 NCBI chr21:6,597,039...6,599,484
Ensembl chr21:6,596,141...6,599,840 		JBrowse link
G LOC476816 folate receptor beta enables ISO (PMID:19116913), (PMID:25015955), (PMID:4066659) BHF-UCL PMID:4066659 PMID:19116913 PMID:25015955 NCBI chr21:25,917,476...25,923,267 JBrowse link
G LOC609612 folate receptor alpha enables IEA Ensembl GO_REF:0000107 NCBI chr21:25,944,350...25,951,010 JBrowse link
G MTHFS methenyltetrahydrofolate synthetase enables IEA Ensembl GO_REF:0000107 NCBI chr 3:57,480,935...57,514,836 JBrowse link
G MTR 5-methyltetrahydrofolate-homocysteine methyltransferase ISO RGD PMID:11730351 RGD:1601423 NCBI chr 4:3,219,851...3,328,000
Ensembl chr 4:3,215,090...3,328,115 		JBrowse link
G SARDH sarcosine dehydrogenase ISO RGD PMID:6163778 RGD:7245485 NCBI chr 9:50,030,397...50,093,556
Ensembl chr 9:50,030,707...50,091,553 		JBrowse link
G SLC19A1 solute carrier family 19 member 1 enables ISO
IEA		 RGD
TreeGrafter
UniProt		 PMID:11600421 GO_REF:0000043 GO_REF:0000104 GO_REF:0000118 RGD:735239 NCBI chr31:38,958,332...38,971,091
Ensembl chr31:38,967,013...38,971,094 		JBrowse link
G SLC46A1 solute carrier family 46 member 1 enables IEA UniProt GO_REF:0000043 NCBI chr 9:42,638,670...42,650,241
Ensembl chr 9:42,643,328...42,650,188 		JBrowse link
G TYMS thymidylate synthetase ISO RGD PMID:7537805 RGD:2317419 NCBI chr 7:67,487,927...67,497,747
Ensembl chr 7:67,487,927...67,497,747 		JBrowse link
G UROS uroporphyrinogen III synthase ISO RGD PMID:6466301 RGD:2303402 NCBI chr28:34,952,074...34,983,532
Ensembl chr28:34,948,003...34,983,532 		JBrowse link
L-ascorbic acid binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBH dopamine beta-hydroxylase enables IEA UniProt GO_REF:0000043 NCBI chr 9:50,004,806...50,024,130
Ensembl chr 9:50,004,806...50,024,130 		JBrowse link
G EGLN1 egl-9 family hypoxia inducible factor 1 enables IEA InterPro GO_REF:0000002 NCBI chr 4:8,053,486...8,110,791
Ensembl chr 4:8,053,837...8,109,325 		JBrowse link
G EGLN2 egl-9 family hypoxia inducible factor 2 enables IEA InterPro GO_REF:0000002 NCBI chr 1:112,992,779...113,001,836
Ensembl chr 1:112,992,780...113,000,677 		JBrowse link
G EGLN3 egl-9 family hypoxia inducible factor 3 enables IEA InterPro GO_REF:0000002 NCBI chr 8:12,873,755...12,901,728
Ensembl chr 8:12,875,387...12,901,709 		JBrowse link
G LOC119878397 phytanoyl-CoA dioxygenase, peroxisomal-like enables IEA Ensembl GO_REF:0000107
G LOC478000 phytanoyl-CoA hydroxylase-like enables ISO (PMID:10744784) UniProt PMID:10744784 NCBI chr 2:23,185,901...23,206,719
Ensembl chr 2:23,185,782...23,253,497 		JBrowse link
G OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 enables IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr 2:59,711,440...59,736,448
Ensembl chr 2:59,711,890...59,736,216 		JBrowse link
G OGFOD2 2-oxoglutarate and iron dependent oxygenase domain containing 2 enables IEA InterPro GO_REF:0000002 NCBI chr26:6,525,655...6,530,333
Ensembl chr26:6,526,304...6,530,286 		JBrowse link
G OGFOD3 2-oxoglutarate and iron dependent oxygenase domain containing 3 enables IEA InterPro GO_REF:0000002
G P3H1 prolyl 3-hydroxylase 1 enables IEA InterPro GO_REF:0000002 NCBI chr15:603,436...621,839
Ensembl chr15:603,329...621,568 		JBrowse link
G P3H2 prolyl 3-hydroxylase 2 enables IEA InterPro GO_REF:0000002 NCBI chr34:22,035,124...22,185,146
Ensembl chr34:22,023,068...22,185,026 		JBrowse link
G P3H3 prolyl 3-hydroxylase 3 enables IEA InterPro GO_REF:0000002 NCBI chr27:38,182,642...38,195,173
Ensembl chr27:38,182,856...38,194,902 		JBrowse link
G P4HA1 prolyl 4-hydroxylase subunit alpha 1 enables IEA InterPro GO_REF:0000002 NCBI chr 4:23,600,399...23,677,820
Ensembl chr 4:23,601,636...23,677,762 		JBrowse link
G P4HA2 prolyl 4-hydroxylase subunit alpha 2 enables IEA InterPro GO_REF:0000002 NCBI chr11:20,514,982...20,548,261
Ensembl chr11:20,514,978...20,549,541 		JBrowse link
G P4HA3 prolyl 4-hydroxylase subunit alpha 3 enables IEA InterPro GO_REF:0000002 NCBI chr21:23,991,474...24,033,086
Ensembl chr21:23,991,469...24,032,642 		JBrowse link
G P4HTM prolyl 4-hydroxylase, transmembrane enables IEA InterPro GO_REF:0000002 NCBI chr20:40,157,952...40,172,624
Ensembl chr20:40,157,952...40,172,599 		JBrowse link
G PAM peptidylglycine alpha-amidating monooxygenase enables IEA UniProt GO_REF:0000043 NCBI chr 3:8,141,508...8,312,081
Ensembl chr 3:8,142,061...8,290,477 		JBrowse link
G PLOD1 procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 enables ISO
IEA		 RGD
UniProt
InterPro		 PMID:11714250 GO_REF:0000002 GO_REF:0000043 RGD:1599090 NCBI chr 2:84,320,529...84,343,562
Ensembl chr 2:84,320,529...84,343,562 		JBrowse link
G PLOD2 procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 enables IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr23:41,290,183...41,382,917
Ensembl chr23:41,290,567...41,382,807 		JBrowse link
G PLOD3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 enables IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr 6:8,664,135...8,671,637
Ensembl chr 6:8,664,358...8,671,620 		JBrowse link
phosphopantetheine binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FASN fatty acid synthase enables IEA InterPro GO_REF:0000002 NCBI chr 9:233,105...249,573
Ensembl chr 9:232,963...249,092 		JBrowse link
pyridoxal phosphate binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AADAT aminoadipate aminotransferase enables IEA InterPro GO_REF:0000002 NCBI chr25:20,920,118...20,944,251
Ensembl chr25:20,920,139...20,945,387 		JBrowse link
G ABAT 4-aminobutyrate aminotransferase enables IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:33,385,779...33,471,348
Ensembl chr 6:33,376,996...33,471,326 		JBrowse link
G ACCS 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) enables IEA InterPro GO_REF:0000002 NCBI chr18:45,141,870...45,159,255
Ensembl chr18:45,142,586...45,159,255 		JBrowse link
G AGXT alanine--glyoxylate and serine--pyruvate aminotransferase enables IEA Ensembl GO_REF:0000107 NCBI chr25:50,968,291...50,976,089 JBrowse link
G AGXT2 alanine--glyoxylate aminotransferase 2 enables IEA InterPro GO_REF:0000002 NCBI chr 4:73,292,117...73,327,769
Ensembl chr 4:73,292,101...73,327,962 		JBrowse link
G ALAS1 5'-aminolevulinate synthase 1 enables IEA InterPro GO_REF:0000002 NCBI chr20:37,552,813...37,566,417
Ensembl chr20:37,552,814...37,566,638 		JBrowse link
G ALAS2 5'-aminolevulinate synthase 2 enables IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr  X:46,703,477...46,731,767
Ensembl chr  X:46,703,477...46,723,529 		JBrowse link
G ALB albumin enables ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr13:62,133,747...62,169,349
Ensembl chr13:62,053,814...62,294,709 		JBrowse link
G CBS cystathionine beta-synthase enables IEA Ensembl GO_REF:0000107 NCBI chr31:37,230,900...37,247,170 JBrowse link
G CISD1 CDGSH iron sulfur domain 1 enables ISO (PMID:36194135) UniProt PMID:36194135
G CSAD cysteine sulfinic acid decarboxylase enables IEA InterPro GO_REF:0000002 NCBI chr27:2,005,482...2,036,703
Ensembl chr27:2,005,355...2,036,228 		JBrowse link
G CTH cystathionine gamma-lyase enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 6:75,324,328...75,348,476
Ensembl chr 6:75,324,787...75,349,451 		JBrowse link
G DDC dopa decarboxylase enables ISO
IEA		 RGD
InterPro		 PMID:8422386 GO_REF:0000002 RGD:4139896 NCBI chr18:1,802,239...1,876,714
Ensembl chr18:1,803,273...1,867,616 		JBrowse link
G ETNPPL ethanolamine-phosphate phospho-lyase enables IEA InterPro GO_REF:0000002 NCBI chr32:29,073,846...29,093,077
Ensembl chr32:28,963,168...29,093,101 		JBrowse link
G EXT2 exostosin glycosyltransferase 2 enables IEA InterPro GO_REF:0000002 NCBI chr18:44,987,310...45,122,339
Ensembl chr18:44,987,748...45,129,974 		JBrowse link
G GAD1 glutamate decarboxylase 1 enables ISO
IEA		 RGD
InterPro		 PMID:1880546 GO_REF:0000002 RGD:6480263 NCBI chr36:15,351,289...15,391,701
Ensembl chr36:15,349,683...15,391,824 		JBrowse link
G GAD2 glutamate decarboxylase 2 enables ISO
IEA		 RGD
InterPro		 PMID:1880546 GO_REF:0000002 RGD:6480263 NCBI chr 2:7,365,708...7,450,893
Ensembl chr 2:7,365,283...7,450,893 		JBrowse link
G GADL1 glutamate decarboxylase like 1 enables IEA InterPro GO_REF:0000002 NCBI chr23:13,697,028...13,859,980
Ensembl chr23:13,696,741...13,859,358 		JBrowse link
G GCAT glycine C-acetyltransferase enables IEA InterPro GO_REF:0000002 NCBI chr10:26,821,121...26,827,496
Ensembl chr10:26,821,027...26,827,707 		JBrowse link
G GLDC glycine decarboxylase enables ISO
IEA		 RGD
TreeGrafter		 PMID:6778858 GO_REF:0000118 RGD:1642728 NCBI chr11:27,491,639...27,584,450
Ensembl chr11:27,414,834...27,584,450 		JBrowse link
G GOT1 glutamic-oxaloacetic transaminase 1 enables IEA InterPro GO_REF:0000002 NCBI chr28:12,352,658...12,377,960
Ensembl chr28:12,352,659...12,414,579 		JBrowse link
G GOT1L1 glutamic-oxaloacetic transaminase 1 like 1 enables IEA InterPro GO_REF:0000002 NCBI chr16:27,462,364...27,495,115
Ensembl chr16:27,462,501...27,467,492 		JBrowse link
G GOT2 glutamic-oxaloacetic transaminase 2 enables ISO
IEA		 RGD
TreeGrafter
InterPro		 PMID:12686151 PMID:14522984 GO_REF:0000002 GO_REF:0000118 RGD:1582383 RGD:2289396 NCBI chr 2:57,968,833...57,994,219
Ensembl chr 2:57,968,833...57,994,218 		JBrowse link
G GPT glutamic--pyruvic transaminase enables IEA InterPro GO_REF:0000002 NCBI chr13:37,923,757...37,927,843
Ensembl chr13:37,924,422...37,926,156 		JBrowse link
G GPT2 glutamic--pyruvic transaminase 2 enables IEA InterPro GO_REF:0000002 NCBI chr15:8,238,295...8,250,789 JBrowse link
G HDC histidine decarboxylase enables ISO
IEA		 RGD
InterPro		 PMID:5898 PMID:4449071 PMID:7075603 PMID:9525922 PMID:12204113 More... GO_REF:0000002 RGD:2303726 RGD:2303727 RGD:2303728 RGD:2303733 RGD:2303734 RGD:2303735 NCBI chr30:16,201,222...16,223,452
Ensembl chr30:16,201,589...16,223,662 		JBrowse link
G KYAT1 kynurenine aminotransferase 1 enables IEA InterPro GO_REF:0000002 NCBI chr 9:54,760,212...54,796,996
Ensembl chr 9:54,760,276...54,796,848 		JBrowse link
G KYAT3 kynurenine aminotransferase 3 enables IEA InterPro GO_REF:0000002 NCBI chr 6:59,409,715...59,473,238
Ensembl chr 6:59,416,191...59,473,232 		JBrowse link
G KYNU kynureninase enables ISO
IEA		 RGD
UniProt
InterPro		 PMID:7451426 GO_REF:0000002 GO_REF:0000104 RGD:2290547 NCBI chr19:45,022,450...45,150,977
Ensembl chr19:45,022,072...45,149,339 		JBrowse link
G LOC119868948 ornithine aminotransferase, mitochondrial enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118
G LOC483960 glutamate decarboxylase 1-like enables IEA InterPro GO_REF:0000002 NCBI chr 1:15,982,071...16,004,623 JBrowse link
G MOCOS molybdenum cofactor sulfurase enables IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr 7:53,950,561...54,002,046
Ensembl chr 7:53,945,436...54,002,252 		JBrowse link
G MTARC1 mitochondrial amidoxime reducing component 1 enables IEA InterPro GO_REF:0000002 NCBI chr38:15,460,548...15,490,941
Ensembl chr38:15,463,548...15,532,241 		JBrowse link
G MTARC2 mitochondrial amidoxime reducing component 2 enables IEA InterPro GO_REF:0000002 NCBI chr38:15,426,884...15,451,701
Ensembl chr38:15,426,666...15,451,136 		JBrowse link
G NFS1 NFS1 cysteine desulfurase enables IEA InterPro GO_REF:0000002 NCBI chr24:24,593,348...24,614,938
Ensembl chr24:24,594,264...24,614,902 		JBrowse link
G OAT ornithine aminotransferase enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr28:33,763,661...33,788,817
Ensembl chr28:33,758,473...33,788,759 		JBrowse link
G PDXDC1 pyridoxal dependent decarboxylase domain containing 1 enables IEA InterPro GO_REF:0000002 NCBI chr 6:28,412,211...28,464,522
Ensembl chr 6:28,412,316...28,508,743 		JBrowse link
G PDXK pyridoxal kinase enables ISO (PMID:16600635) UniProt PMID:16600635 NCBI chr31:37,686,002...37,710,059
Ensembl chr31:37,685,492...37,707,767 		JBrowse link
G PHYKPL 5-phosphohydroxy-L-lysine phospho-lyase enables IEA InterPro GO_REF:0000002 NCBI chr11:3,324,035...3,358,070
Ensembl chr11:3,323,722...3,358,063 		JBrowse link
G PLPBP pyridoxal phosphate binding protein enables IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr16:27,599,078...27,617,902
Ensembl chr16:27,599,310...27,617,843 		JBrowse link
G PNPO pyridoxamine 5'-phosphate oxidase enables IEA Ensembl GO_REF:0000107 NCBI chr 9:24,252,895...24,258,523
Ensembl chr 9:24,252,964...24,258,106 		JBrowse link
G PSAT1 phosphoserine aminotransferase 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 1:80,376,469...80,408,177
Ensembl chr 1:80,377,115...80,408,162 		JBrowse link
G PYGB glycogen phosphorylase B enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr23:1,440,826...1,494,570
Ensembl chr23:1,420,052...1,496,245 		JBrowse link
G PYGL glycogen phosphorylase L enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 8:27,264,778...27,307,977
Ensembl chr 8:27,223,273...27,307,977 		JBrowse link
G PYGM glycogen phosphorylase, muscle associated enables ISO
IEA		 RGD
TreeGrafter
InterPro		 PMID:11692172 GO_REF:0000002 GO_REF:0000118 RGD:1599897 NCBI chr18:52,398,192...52,410,731
Ensembl chr18:52,398,056...52,410,464 		JBrowse link
G SDS serine dehydratase enables IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr26:10,725,123...10,728,087 JBrowse link
G SGPL1 sphingosine-1-phosphate lyase 1 enables IEA InterPro GO_REF:0000002 NCBI chr 4:21,666,264...21,717,476
Ensembl chr 4:21,660,939...21,715,155 		JBrowse link
G SGSM2 small G protein signaling modulator 2 enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 9:46,405,890...46,464,586
Ensembl chr 9:46,415,801...46,477,524 		JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 enables ISO
IEA		 RGD
TreeGrafter
InterPro		 PMID:3110140 GO_REF:0000002 GO_REF:0000118 RGD:2300383 NCBI chr 5:41,221,531...41,248,653
Ensembl chr 5:41,221,562...41,253,166 		JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 enables ISO
IEA		 RGD
TreeGrafter
Ensembl
InterPro		 PMID:3110140 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:2300383 NCBI chr10:1,357,347...1,362,511
Ensembl chr10:1,356,706...1,362,305 		JBrowse link
G SPTLC1 serine palmitoyltransferase long chain base subunit 1 enables IEA InterPro GO_REF:0000002 NCBI chr 1:94,997,240...95,062,424
Ensembl chr 1:94,997,290...95,064,468 		JBrowse link
G SPTLC2 serine palmitoyltransferase long chain base subunit 2 enables IEA InterPro GO_REF:0000002 NCBI chr 8:50,291,797...50,401,202
Ensembl chr 8:50,271,010...50,401,313 		JBrowse link
G SPTLC3 serine palmitoyltransferase long chain base subunit 3 enables IEA InterPro GO_REF:0000002 NCBI chr24:9,447,575...9,597,544
Ensembl chr24:9,447,859...9,595,975 		JBrowse link
G SRR serine racemase enables ISO
IEA		 RGD
TreeGrafter
InterPro		 PMID:9892700 GO_REF:0000002 GO_REF:0000118 RGD:2302218
G TAT tyrosine aminotransferase enables IEA InterPro GO_REF:0000002 NCBI chr 5:77,365,589...77,378,474
Ensembl chr 5:77,366,138...77,378,419 		JBrowse link
G THNSL2 threonine synthase like 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:38,196,605...38,212,624
Ensembl chr17:38,191,494...38,212,809 		JBrowse link
retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 ISO RGD PMID:8663198 RGD:724800 NCBI chr30:23,074,432...23,170,374
Ensembl chr30:23,074,432...23,340,030 		JBrowse link
G RBP4 retinol binding protein 4 enables IEA UniProt GO_REF:0000043 NCBI chr28:7,822,936...7,830,735
Ensembl chr28:7,822,944...7,830,750 		JBrowse link
G RHO rhodopsin ISO 9-cis and 11-cis retinal
9-cis retinaldehyde		 RGD PMID:2525480 PMID:8814134 RGD:6893558 RGD:6893595 NCBI chr20:5,630,735...5,638,906 JBrowse link
G STRA6 signaling receptor and transporter of retinol STRA6 enables IEA UniProt GO_REF:0000043 NCBI chr30:37,331,834...37,359,449
Ensembl chr30:37,331,832...37,353,529 		JBrowse link
retinol binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide enables IEA Ensembl GO_REF:0000107 NCBI chr32:21,282,526...21,299,387
Ensembl chr32:21,282,890...21,299,328 		JBrowse link
G LOC491263 beta-lactoglobulin-1 enables IEA UniProt GO_REF:0000043 NCBI chr 9:49,663,646...49,667,034 JBrowse link
G LOC491264 beta-lactoglobulin-2 enables IEA UniProt GO_REF:0000043 NCBI chr 9:49,688,619...49,691,690 JBrowse link
G LOC607807 beta-lactoglobulin-2-like enables IEA UniProt GO_REF:0000043 NCBI chr 9:49,673,766...49,681,331 JBrowse link
G LRAT lecithin retinol acyltransferase ISO RGD PMID:2253789 PMID:8460936 PMID:9244401 RGD:1599829 RGD:1599831 RGD:1599832 NCBI chr15:52,399,773...52,409,590
Ensembl chr15:52,399,544...52,406,176 		JBrowse link
G RBP1 retinol binding protein 1 ISO RGD PMID:12850148 PMID:16755609 PMID:19965581 RGD:6484697 RGD:6484735 RGD:6893656 NCBI chr23:35,677,844...35,698,194
Ensembl chr23:35,679,176...35,698,363 		JBrowse link
G RBP2 retinol binding protein 2 ISO RGD PMID:12850148 PMID:19965581 RGD:6484697 RGD:6893656 NCBI chr23:35,619,215...35,642,249
Ensembl chr23:35,619,221...35,642,213 		JBrowse link
G RBP3 retinol binding protein 3 enables ISO
IEA		 RGD
TreeGrafter		 PMID:8282025 GO_REF:0000118 RGD:6893658 NCBI chr 4:34,974,559...34,983,460
Ensembl chr 4:34,974,638...34,982,907 		JBrowse link
G RBP4 retinol binding protein 4 enables ISO
IEA		 RGD
TreeGrafter
UniProt		 PMID:9260907 GO_REF:0000043 GO_REF:0000118 RGD:6484695 NCBI chr28:7,822,936...7,830,735
Ensembl chr28:7,822,944...7,830,750 		JBrowse link
G STRA6 signaling receptor and transporter of retinol STRA6 enables IEA UniProt GO_REF:0000043 NCBI chr30:37,331,834...37,359,449
Ensembl chr30:37,331,832...37,353,529 		JBrowse link
thiamine binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TPK1 thiamin pyrophosphokinase 1 enables IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr16:5,257,749...5,588,179
Ensembl chr16:5,257,205...5,636,153 		JBrowse link
thiamine pyrophosphate binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHTKD1 dehydrogenase E1 and transketolase domain containing 1 enables IEA InterPro GO_REF:0000002 NCBI chr 2:24,298,323...24,349,848
Ensembl chr 2:24,299,789...24,349,899 		JBrowse link
G ILVBL ilvB acetolactate synthase like enables IEA InterPro GO_REF:0000002 NCBI chr20:47,013,033...47,021,511
Ensembl chr20:47,012,557...47,021,778 		JBrowse link
G LOC608697 2-hydroxyacyl-CoA lyase 1 enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr23:27,069,676...27,188,247 JBrowse link
G OGDH oxoglutarate dehydrogenase enables IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107
G OGDHL oxoglutarate dehydrogenase L enables IEA InterPro GO_REF:0000002 NCBI chr28:1,573,653...1,600,264
Ensembl chr28:1,573,793...1,596,285 		JBrowse link
G PARG poly(ADP-ribose) glycohydrolase enables IEA InterPro GO_REF:0000002 NCBI chr28:1,651,698...1,767,210
Ensembl chr28:1,652,670...1,766,895 		JBrowse link
G TKT transketolase enables ISO
IEA		 RGD
TreeGrafter		 PMID:16116031 GO_REF:0000118 RGD:1580394 NCBI chr20:36,690,540...36,705,980
Ensembl chr20:36,681,531...36,742,199 		JBrowse link
G TKTL1 transketolase like 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr  X:122,007,270...122,034,500
Ensembl chr  X:122,007,282...122,034,255 		JBrowse link
vitamin B6 binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SCLY selenocysteine lyase enables ISO PMID:20164179 CAFA PMID:20164179 RGD:12793035 NCBI chr25:48,574,648...48,608,367
Ensembl chr25:48,574,130...48,632,035 		JBrowse link
vitamin D binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CALB1 calbindin 1 enables IEA UniProt GO_REF:0000043 NCBI chr29:35,551,836...35,572,985
Ensembl chr29:35,552,436...35,572,925 		JBrowse link
G COMP cartilage oligomeric matrix protein ISO RGD PMID:12426368 RGD:1298777 NCBI chr20:44,306,813...44,314,575
Ensembl chr20:44,306,859...44,314,625 		JBrowse link
G GC GC vitamin D binding protein enables ISO
IEA		 RGD
TreeGrafter
UniProt
InterPro		 PMID:49052 GO_REF:0000002 GO_REF:0000043 GO_REF:0000118 RGD:2315532 NCBI chr13:60,795,305...60,828,038
Ensembl chr13:60,795,305...60,827,929 		JBrowse link
G S100G S100 calcium binding protein G enables IEA UniProt GO_REF:0000043 NCBI chr  X:12,808,234...12,813,696
Ensembl chr  X:12,808,718...12,812,972 		JBrowse link
G VDR vitamin D receptor ISO RGD PMID:2829212 RGD:729973 NCBI chr27:6,852,915...6,909,466
Ensembl chr27:6,852,723...6,909,470 		JBrowse link
vitamin E binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFM afamin enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr13:62,212,230...62,235,136
Ensembl chr13:62,053,814...62,294,709 		JBrowse link
G NPC1L1 NPC1 like intracellular cholesterol transporter 1 enables ISO (PMID:28315682) UniProt PMID:28315682
G TTPA alpha tocopherol transfer protein enables ISO
IEA		 RGD
TreeGrafter		 PMID:1569384 GO_REF:0000118 RGD:1600437 NCBI chr29:13,177,690...13,198,910
Ensembl chr29:13,182,308...13,192,553 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 18814
    binding 16685
      small molecule binding 5701
        vitamin binding 146
          L-ascorbic acid binding 20
          biotin binding 4
          cobalamin binding 12
          folic acid binding 14
          phosphopantetheine binding 1
          retinal binding + 12
          retinol binding + 12
          thiamine binding 1
          thiamine pyrophosphate binding 8
          vitamin B6 binding + 57
          vitamin D binding + 6
          vitamin E binding 3
paths to the root