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ONTOLOGY REPORT - ANNOTATIONS


Term:vitamin binding
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Accession:GO:0019842 term browser browse the term
Definition:Binding to a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body.


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vitamin binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GGCX gamma-glutamyl carboxylase ISO RGD PMID:12754193 RGD:1582507 NCBI chr2A:85,599,227...85,612,274
Ensembl chr2A:87,152,111...87,164,567
JBrowse link
G PANK3 pantothenate kinase 3 enables ISO (PMID:27555321) UniProt PMID:27555321 NCBI chr 5:163,913,842...163,944,939
Ensembl chr 5:170,685,413...170,709,211
JBrowse link
G PYGL glycogen phosphorylase L enables ISO (PMID:12204691) UniProt PMID:12204691 NCBI chr14:31,494,172...31,533,545
Ensembl chr14:49,746,309...49,832,786
JBrowse link
G TTPA alpha tocopherol transfer protein ISO RGD PMID:8349655 RGD:730016 NCBI chr 8:59,591,592...59,619,658
Ensembl chr 8:61,266,954...61,293,699
JBrowse link
11-cis retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 enables ISO (PMID:23144455) UniProt PMID:23144455 NCBI chr 1:96,659,703...96,784,876
Ensembl chr 1:95,386,266...95,514,589
JBrowse link
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 enables ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr2B:33,057,718...33,092,809
Ensembl chr2B:127,859,318...127,872,150
JBrowse link
G OPN3 opsin 3 enables ISO (PMID:31097585) UniProt PMID:31097585 NCBI chr 1:217,155,765...217,202,577
Ensembl chr 1:222,136,422...222,184,598
JBrowse link
G OPN4 opsin 4 enables ISO (PMID:15674244) UniProt PMID:15674244 NCBI chr10:83,082,351...83,095,161 JBrowse link
G OPN5 opsin 5 enables ISO (PMID:22043319)
(MGI:6230806|PMID:22043319)
(MGI:5582695|PMID:24403072)
UniProt
MGI
PMID:22043319 PMID:24403072 MGI:5582695 MGI:6230806 NCBI chr 6:47,364,955...47,409,199
Ensembl chr 6:48,628,478...48,658,119
JBrowse link
G RLBP1 retinaldehyde binding protein 1 enables ISO (MGI:1097298|PMID:9326942) MGI PMID:9326942 MGI:1097298 NCBI chr15:67,901,276...67,913,911
Ensembl chr15:87,108,815...87,117,971
JBrowse link
all-trans retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 enables ISO (PMID:20404325), (PMID:29847635), (PMID:33375396) UniProt PMID:20404325 PMID:29847635 PMID:33375396 NCBI chr 1:96,659,703...96,784,876
Ensembl chr 1:95,386,266...95,514,589
JBrowse link
G ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide enables ISO (PMID:15369820) UniProt PMID:15369820 NCBI chr 4:91,522,444...91,543,086
Ensembl chr 4:102,183,956...102,206,923
JBrowse link
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 enables ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr2B:33,057,718...33,092,809
Ensembl chr2B:127,859,318...127,872,150
JBrowse link
G CYP2W1 cytochrome P450 family 2 subfamily W member 1 enables ISO (PMID:26936974) UniProt PMID:26936974 NCBI chr 7:1,140,855...1,147,788
Ensembl chr 7:1,353,510...1,362,781
JBrowse link
G OPN3 opsin 3 enables ISO (PMID:31097585) UniProt PMID:31097585 NCBI chr 1:217,155,765...217,202,577
Ensembl chr 1:222,136,422...222,184,598
JBrowse link
all-trans-retinol binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 enables ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr2B:33,057,718...33,092,809
Ensembl chr2B:127,859,318...127,872,150
JBrowse link
G CYP2W1 cytochrome P450 family 2 subfamily W member 1 enables ISO (PMID:26936974) UniProt PMID:26936974 NCBI chr 7:1,140,855...1,147,788
Ensembl chr 7:1,353,510...1,362,781
JBrowse link
G RBP1 retinol binding protein 1 enables ISO (PMID:28057518) UniProt PMID:28057518 NCBI chr 3:136,554,315...136,576,682
Ensembl chr 3:144,153,937...144,176,209
JBrowse link
biotin binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACACA acetyl-CoA carboxylase alpha ISO RGD PMID:12949377 RGD:1601566 NCBI chr17:19,670,114...19,998,903
Ensembl chr17:19,969,205...20,297,651
JBrowse link
G ACACB acetyl-CoA carboxylase beta ISO RGD PMID:12949377 RGD:1601566 NCBI chr12:106,692,668...106,845,490
Ensembl chr12:110,086,374...110,239,847
JBrowse link
G HLCS holocarboxylase synthetase enables ISO (PMID:14613969) UniProt PMID:14613969 NCBI chr21:23,112,477...23,352,121
Ensembl chr21:36,470,872...36,655,688
JBrowse link
G PC pyruvate carboxylase ISO RGD PMID:12949377 RGD:1601566 NCBI chr11:62,205,644...62,317,917
Ensembl chr11:65,527,662...65,551,396
JBrowse link
calcidiol binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GC GC vitamin D binding protein enables ISO (PMID:11799400) UniProt PMID:11799400 NCBI chr 4:52,431,196...52,473,762
Ensembl chr 4:58,729,236...58,792,073
JBrowse link
calcitriol binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VDR vitamin D receptor enables ISO (PMID:10678179), (PMID:12016314)
(PMID:28698609)
RGD
UniProt
PMID:8179318 PMID:10678179 PMID:12016314 PMID:28698609 RGD:8158087 NCBI chr12:40,828,413...40,891,700
Ensembl chr12:41,702,742...41,766,192
JBrowse link
cobalamin binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CBLIF cobalamin binding intrinsic factor enables ISO (PMID:14695536) RGD
UniProt
PMID:7150665 PMID:14695536 RGD:1624372 NCBI chr11:55,052,839...55,069,113
Ensembl chr11:58,500,878...58,517,094
JBrowse link
G CD320 CD320 molecule enables ISO (PMID:18779389) MGI PMID:18779389 NCBI chr19:7,587,760...7,594,055
Ensembl chr19:8,438,955...8,445,464
JBrowse link
G MMAB metabolism of cobalamin associated B enables ISO (PMID:28497574) UniProt PMID:28497574 NCBI chr12:107,130,410...107,150,274
Ensembl chr12:110,528,043...110,544,871
JBrowse link
G MMUT methylmalonyl-CoA mutase enables ISO (PMID:1978672), (PMID:20876572), (PMID:21138732), (PMID:28943303) UniProt PMID:1978672 PMID:20876572 PMID:21138732 PMID:28943303 NCBI chr 6:49,007,500...49,040,470
Ensembl chr 6:50,269,644...50,302,593
JBrowse link
G TCN2 transcobalamin 2 enables ISO (PMID:16537422), (PMID:27411955), (PMID:8443384) RGD
UniProt
PMID:8443384 PMID:11287214 PMID:16537422 PMID:27411955 RGD:1601485 NCBI chr22:11,635,107...11,655,137
Ensembl chr22:29,435,517...29,455,494
JBrowse link
D3 vitamins binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP2R1 cytochrome P450 family 2 subfamily R member 1 enables ISO (PMID:18511070) UniProt PMID:18511070 NCBI chr11:14,960,651...14,989,083
Ensembl chr11:14,656,939...14,671,584
JBrowse link
folic acid binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHFR dihydrofolate reductase enables ISO (PMID:2303423) BHF-UCL PMID:2303423 NCBI chr 5:34,663,210...34,689,467
Ensembl chr 5:34,938,548...34,967,003
JBrowse link
G DMGDH dimethylglycine dehydrogenase ISO RGD PMID:6159630 PMID:6163778 RGD:1599787 RGD:7245485 NCBI chr 5:36,241,341...36,313,995
Ensembl chr 5:36,732,005...36,805,883
JBrowse link
G FOLR1 folate receptor alpha enables ISO (PMID:10787414), (PMID:14722620), (PMID:23851396), (PMID:2527252) RGD
BHF-UCL
PMID:2527252 PMID:10751329 PMID:10787414 PMID:14722620 PMID:23851396 RGD:1358236 NCBI chr11:67,268,721...67,275,498
Ensembl chr11:70,492,039...70,498,665
JBrowse link
G FOLR2 folate receptor beta enables ISO (PMID:19116913), (PMID:25015955), (PMID:4066659) BHF-UCL PMID:4066659 PMID:19116913 PMID:25015955 NCBI chr11:67,295,305...67,300,463
Ensembl chr11:70,518,931...70,524,088
JBrowse link
G GNMT glycine N-methyltransferase ISO RGD PMID:17158459 RGD:7242951 NCBI chr 6:42,550,631...42,554,385
Ensembl chr 6:43,846,560...43,849,679
JBrowse link
G IZUMO1R IZUMO1 receptor, JUNO NOT|enables ISO (MGI:5568137|PMID:24739963) UniProt PMID:24739963 MGI:5568137 NCBI chr11:89,318,370...89,322,004
Ensembl chr11:92,805,614...92,807,669
JBrowse link
G MTR 5-methyltetrahydrofolate-homocysteine methyltransferase ISO RGD PMID:11730351 RGD:1601423 NCBI chr 1:212,353,195...212,463,304
Ensembl chr 1:217,358,050...217,460,946
JBrowse link
G SARDH sarcosine dehydrogenase ISO RGD PMID:6163778 RGD:7245485 NCBI chr 9:104,786,774...104,864,480
Ensembl chr 9:133,398,806...133,473,642
JBrowse link
G SLC19A1 solute carrier family 19 member 1 ISO RGD PMID:11600421 RGD:735239 NCBI chr21:31,836,774...31,883,829
Ensembl chr21:45,090,595...45,134,752
JBrowse link
G TYMS thymidylate synthetase ISO RGD PMID:7537805 RGD:2317419 NCBI chr18:13,653,085...13,668,478
Ensembl chr18:17,295,182...17,310,320
JBrowse link
G UROS uroporphyrinogen III synthase ISO RGD PMID:6466301 RGD:2303402 NCBI chr10:122,346,072...122,384,405
Ensembl chr10:126,613,732...126,648,363
JBrowse link
L-ascorbic acid binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHYH phytanoyl-CoA 2-hydroxylase enables ISO (PMID:10744784) UniProt PMID:10744784 NCBI chr10:13,277,804...13,300,115
Ensembl chr10:13,251,223...13,636,018
JBrowse link
G PLOD1 procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 ISO RGD PMID:11714250 RGD:1599090 NCBI chr 1:10,684,608...10,725,376
Ensembl chr 1:11,900,881...11,941,308
JBrowse link
pyridoxal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDXK pyridoxal kinase ISO RGD PMID:6255956 RGD:2303024 NCBI chr21:29,977,286...30,021,266
Ensembl chr21:43,273,237...43,313,637
JBrowse link
pyridoxal phosphate binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABAT 4-aminobutyrate aminotransferase enables ISO (PMID:6470007)
(PMID:15650327)
UniProt PMID:6470007 PMID:15650327 NCBI chr16:7,609,282...7,718,049
Ensembl chr16:8,888,178...8,958,420
JBrowse link
G AGXT alanine--glyoxylate and serine--pyruvate aminotransferase enables ISO (PMID:15802217)
(PMID:17696873), (PMID:20133649)
HGNC-UCL
UniProt
PMID:15802217 PMID:17696873 PMID:20133649 NCBI chr2B:128,125,289...128,137,091
Ensembl chr2B:246,928,784...246,939,837
JBrowse link
G ALB albumin enables ISO (PMID:16201370) UniProt PMID:16201370 NCBI chr 4:50,773,244...50,790,474
Ensembl chr 4:56,605,322...56,622,418
JBrowse link
G CBS cystathionine beta-synthase enables ISO (PMID:18776696), (PMID:7929220) UniProt PMID:7929220 PMID:18776696 NCBI chr21:29,361,519...29,385,610 JBrowse link
G CTH cystathionine gamma-lyase enables ISO (PMID:10212249), (PMID:19019829) UniProt PMID:10212249 PMID:19019829 NCBI chr 1:69,646,608...69,674,301
Ensembl chr 1:71,629,333...71,677,666
JBrowse link
G DDC dopa decarboxylase ISO RGD PMID:8422386 RGD:4139896 NCBI chr 7:51,101,169...51,206,031
Ensembl chr 7:51,345,228...51,449,710
JBrowse link
G GAD1 glutamate decarboxylase 1 ISO RGD PMID:1880546 RGD:6480263 NCBI chr2B:58,100,623...58,145,045
Ensembl chr2B:175,558,538...175,602,944
JBrowse link
G GAD2 glutamate decarboxylase 2 ISO RGD PMID:1880546 RGD:6480263 NCBI chr10:26,392,877...26,481,859
Ensembl chr10:26,759,243...26,843,197
JBrowse link
G GLDC glycine decarboxylase ISO RGD PMID:6778858 RGD:1642728 NCBI chr 9:6,347,381...6,456,042
Ensembl chr 9:6,527,242...6,635,779
JBrowse link
G GOT2 glutamic-oxaloacetic transaminase 2 ISO RGD PMID:12686151 PMID:14522984 RGD:1582383 RGD:2289396 NCBI chr16:38,995,770...39,022,750
Ensembl chr16:58,120,781...58,147,378
JBrowse link
G HDC histidine decarboxylase ISO RGD PMID:5898 PMID:4449071 PMID:7075603 PMID:9525922 PMID:12204113 More... RGD:2303726 RGD:2303727 RGD:2303728 RGD:2303733 RGD:2303734 RGD:2303735 NCBI chr15:29,188,296...29,212,327
Ensembl chr15:47,510,629...47,534,577
JBrowse link
G KYNU kynureninase ISO RGD PMID:7451426 RGD:2290547 NCBI chr2B:16,792,401...16,947,766
Ensembl chr2B:146,975,995...147,132,634
JBrowse link
G PNPO pyridoxamine 5'-phosphate oxidase enables ISO (PMID:12824491) CAFA PMID:12824491 NCBI chr17:9,589,253...9,596,973
Ensembl chr17:9,773,052...9,778,922
JBrowse link
G PYGM glycogen phosphorylase, muscle associated ISO RGD PMID:11692172 RGD:1599897 NCBI chr11:60,101,810...60,115,813
Ensembl chr11:63,443,609...63,457,430
JBrowse link
G SDS serine dehydratase enables ISO (PMID:15689518) UniProt PMID:15689518 NCBI chr12:110,995,164...111,006,668
Ensembl chr12:114,377,650...114,388,839
JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 enables ISO (PMID:17482557), (PMID:24698160) RGD
BHF-UCL
PMID:3110140 PMID:17482557 PMID:24698160 RGD:2300383 NCBI chr17:32,870,949...32,905,690
Ensembl chr17:37,849,206...37,884,220
JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 enables ISO (PMID:25619277) RGD
UniProt
PMID:3110140 PMID:25619277 RGD:2300383 NCBI chr12:31,692,451...31,697,727
Ensembl chr12:31,944,785...31,950,138
JBrowse link
G SRR serine racemase enables ISO (MGI:1347751|PMID:10557334)
PMID:20106978
(PMID:20106978)
RGD
MGI
UniProt
PMID:9892700 PMID:10557334 PMID:20106978 MGI:1347751 RGD:2302218 RGD:8554326 NCBI chr17:2,294,440...2,316,244
Ensembl chr17:2,182,839...2,200,704
JBrowse link
G THNSL2 threonine synthase like 2 enables ISO (MGI:3690523|PMID:17034760) MGI PMID:17034760 MGI:3690523 NCBI chr2A:87,303,022...87,319,494
Ensembl chr2A:89,212,442...89,228,446
JBrowse link
retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1B10 aldo-keto reductase family 1 member B10 ISO RGD PMID:20709016 RGD:6903952 NCBI chr 7:126,486,012...126,499,852
Ensembl chr 7:138,992,835...139,006,003
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 ISO RGD PMID:8663198 RGD:724800 NCBI chr15:36,925,443...37,038,288
Ensembl chr15:55,237,101...55,557,168
JBrowse link
G RHO rhodopsin ISO 9-cis and 11-cis retinal
9-cis retinaldehyde
RGD PMID:2525480 PMID:8814134 RGD:6893558 RGD:6893595 NCBI chr 3:126,586,510...126,593,028
Ensembl chr 3:133,938,419...133,944,928
JBrowse link
retinol binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide enables ISO (PMID:10407146) UniProt PMID:10407146 NCBI chr 4:91,522,444...91,543,086
Ensembl chr 4:102,183,956...102,206,923
JBrowse link
G ADH7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide enables ISO (PMID:9228021) RGD
UniProt
PMID:9228021 PMID:10829036 RGD:631904 NCBI chr 4:91,833,111...91,856,325
Ensembl chr 4:102,494,784...102,518,215
JBrowse link
G LRAT lecithin retinol acyltransferase ISO RGD PMID:2253789 PMID:8460936 PMID:9244401 RGD:1599829 RGD:1599831 RGD:1599832 NCBI chr 4:147,110,568...147,119,706
Ensembl chr 4:158,928,607...158,937,747
JBrowse link
G RBP1 retinol binding protein 1 ISO RGD PMID:12850148 PMID:16755609 PMID:19965581 RGD:6484697 RGD:6484735 RGD:6893656 NCBI chr 3:136,554,315...136,576,682
Ensembl chr 3:144,153,937...144,176,209
JBrowse link
G RBP2 retinol binding protein 2 ISO RGD PMID:12850148 PMID:19965581 RGD:6484697 RGD:6893656 NCBI chr 3:136,488,536...136,513,337
Ensembl chr 3:144,089,322...144,112,840
JBrowse link
G RBP3 retinol binding protein 3 ISO RGD PMID:8282025 RGD:6893658 NCBI chr10:46,543,196...46,558,978 JBrowse link
G RBP4 retinol binding protein 4 enables ISO (MGI:3687059|PMID:12484775)
(PMID:571335)
(PMID:9757135)
PMID:4708098
RGD
MGI
BHF-UCL
UniProt
PMID:571335 PMID:4708098 PMID:9260907 PMID:9757135 PMID:12484775 MGI:3687059 RGD:11567252 RGD:6484695 NCBI chr10:90,337,879...90,347,530
Ensembl chr10:93,848,166...93,857,887
JBrowse link
thiamine pyrophosphate binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HACL1 2-hydroxyacyl-CoA lyase 1 enables ISO PMID:10468558
(PMID:10468558)
(PMID:21708296)
HGNC-UCL
UniProt
PMID:10468558 PMID:21708296 RGD:708588 NCBI chr 3:15,486,897...15,526,552
Ensembl chr 3:15,823,979...15,863,982
JBrowse link
G OGDH oxoglutarate dehydrogenase enables ISO (PMID:24495017) UniProt PMID:24495017 NCBI chr 7:45,321,559...45,422,515
Ensembl chr 7:45,409,148...45,491,636
JBrowse link
G TKT transketolase ISO RGD PMID:16116031 RGD:1580394 NCBI chr 3:53,168,426...53,199,003
Ensembl chr 3:54,389,549...54,420,704
JBrowse link
vitamin B6 binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SCLY selenocysteine lyase enables ISO PMID:20164179 CAFA PMID:20164179 RGD:12793035 NCBI chr2B:125,276,540...125,331,057
Ensembl chr2B:244,144,105...244,181,767
JBrowse link
vitamin D binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COMP cartilage oligomeric matrix protein ISO RGD PMID:12426368 RGD:1298777 NCBI chr19:18,222,270...18,230,936
Ensembl chr19:19,229,562...19,238,008
JBrowse link
G GC GC vitamin D binding protein ISO RGD PMID:49052 RGD:2315532 NCBI chr 4:52,431,196...52,473,762
Ensembl chr 4:58,729,236...58,792,073
JBrowse link
G VDR vitamin D receptor ISO RGD PMID:2829212 RGD:729973 NCBI chr12:40,828,413...40,891,700
Ensembl chr12:41,702,742...41,766,192
JBrowse link
vitamin E binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFM afamin enables ISO (PMID:12463752)
(PMID:15952736)
UniProt PMID:12463752 PMID:15952736 NCBI chr 4:50,691,556...50,714,140
Ensembl chr 4:56,519,389...56,545,974
JBrowse link
G TTPA alpha tocopherol transfer protein enables ISO (MGI:5494336|PMID:23599266) RGD
UniProt
PMID:1569384 PMID:23599266 MGI:5494336 RGD:1600437 NCBI chr 8:59,591,592...59,619,658
Ensembl chr 8:61,266,954...61,293,699
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 15012
    binding 14201
      small molecule binding 853
        vitamin binding 72
          L-ascorbic acid binding 2
          biotin binding 4
          cobalamin binding 5
          folic acid binding 11
          phosphopantetheine binding 0
          retinal binding + 11
          retinol binding + 9
          thiamine binding 0
          thiamine pyrophosphate binding 3
          vitamin B6 binding + 21
          vitamin D binding + 4
          vitamin E binding 2
paths to the root