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ONTOLOGY REPORT - ANNOTATIONS

Term:isoprenoid binding
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Accession:GO:0019840 term browser browse the term
Definition:Binding to an isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.


show annotations for term's descendants           Sort by:
isoprenoid binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RABGGTB Rab geranylgeranyltransferase subunit beta enables ISO PMID:12620235 CAFA PMID:12620235 RGD:12793022 NCBI chr 6:137,525,063...137,534,132
Ensembl chr 6:137,410,691...137,534,233 		JBrowse link
11-cis retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 enables IEA Ensembl GO_REF:0000107 NCBI chr 4:123,202,720...123,333,044
Ensembl chr 4:123,202,753...123,331,144 		JBrowse link
G LOC100517560 cytochrome P450 27C1 enables ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr15:25,244,585...25,259,545 JBrowse link
G OPN4 opsin 4 enables IEA Ensembl GO_REF:0000107 NCBI chr14:87,645,563...87,660,820
Ensembl chr14:87,647,238...87,658,815 		JBrowse link
G OPN5 opsin 5 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:42,476,125...42,507,181
Ensembl chr 7:42,476,125...42,527,121 		JBrowse link
G RHO rhodopsin enables ISS UniProt GO_REF:0000024 NCBI chr13:68,908,578...68,913,651
Ensembl chr13:68,908,578...68,913,651 		JBrowse link
G RLBP1 retinaldehyde binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:54,783,965...54,800,008
Ensembl chr 7:54,776,113...54,889,014 		JBrowse link
abscisic acid binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100154179 Golgi pH regulator enables IEA TreeGrafter GO_REF:0000118 NCBI chr 4:99,654,852...99,712,244 JBrowse link
all-trans retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 enables IEA Ensembl GO_REF:0000107 NCBI chr 4:123,202,720...123,333,044
Ensembl chr 4:123,202,753...123,331,144 		JBrowse link
G ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide enables IEA Ensembl GO_REF:0000107 NCBI chr 8:121,225,485...121,259,262
NCBI chr  X:98,582,002...98,583,002
Ensembl chr 8:121,225,656...121,261,746 		JBrowse link
G CYP2W1 cytochrome P450 family 2 subfamily W member 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 3:641,997...649,313
Ensembl chr 3:642,471...648,909 		JBrowse link
G LOC100517560 cytochrome P450 27C1 enables ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr15:25,244,585...25,259,545 JBrowse link
all-trans-retinol binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP2W1 cytochrome P450 family 2 subfamily W member 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 3:641,997...649,313
Ensembl chr 3:642,471...648,909 		JBrowse link
G LOC100517560 cytochrome P450 27C1 enables ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr15:25,244,585...25,259,545 JBrowse link
G NMNAT3 nicotinamide nucleotide adenylyltransferase 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chr13:80,431,405...80,556,808
Ensembl chr13:80,429,639...80,556,790 		JBrowse link
G RBP1 retinol binding protein 1 enables IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr13:80,380,958...80,407,328
Ensembl chr13:80,380,962...80,407,458 		JBrowse link
retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 ISO RGD PMID:8663198 RGD:724800 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,932,739...114,037,046 		JBrowse link
G RBP2 retinol binding protein 2 enables IEA UniProt GO_REF:0000043 NCBI chr13:80,321,024...80,346,032
Ensembl chr13:80,320,931...80,352,975 		JBrowse link
G RBP3 retinol binding protein 3 enables IEA UniProt GO_REF:0000043 NCBI chr14:88,491,701...88,503,388
Ensembl chr14:88,490,013...88,504,510 		JBrowse link
G RBP4 retinol binding protein 4 enables IEA UniProt GO_REF:0000043 NCBI chr14:105,037,360...105,044,552
Ensembl chr14:105,037,464...105,044,765 		JBrowse link
G RHO rhodopsin ISO 9-cis retinaldehyde
9-cis and 11-cis retinal		 RGD PMID:2525480 PMID:8814134 RGD:6893558 RGD:6893595 NCBI chr13:68,908,578...68,913,651
Ensembl chr13:68,908,578...68,913,651 		JBrowse link
G STRA6 signaling receptor and transporter of retinol STRA6 enables IEA UniProt GO_REF:0000043 NCBI chr 7:59,317,930...59,347,274
Ensembl chr 7:59,318,011...59,347,266 		JBrowse link
retinoic acid binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRABP1 cellular retinoic acid binding protein 1 enables ISO
IEA
IBA		 RGD
TreeGrafter
GO_Central		 PMID:1967079 GO_REF:0000033 GO_REF:0000118 RGD:6771321 NCBI chr 7:47,602,316...47,608,865
Ensembl chr 7:47,602,192...47,608,970 		JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 enables ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:1967079 GO_REF:0000107 GO_REF:0000118 RGD:6771321 NCBI chr 4:93,388,198...93,393,861
Ensembl chr 4:93,388,092...93,394,155 		JBrowse link
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 enables IEA Ensembl GO_REF:0000107 NCBI chr14:104,561,394...104,567,099
Ensembl chr14:104,563,195...104,567,095 		JBrowse link
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 3:70,573,551...70,593,416
Ensembl chr 3:70,572,197...70,593,408 		JBrowse link
G CYP26C1 cytochrome P450 family 26 subfamily C member 1 enables IEA Ensembl GO_REF:0000107 NCBI chr14:104,550,901...104,558,977
Ensembl chr14:104,551,134...104,559,978 		JBrowse link
G CYP2W1 cytochrome P450 family 2 subfamily W member 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 3:641,997...649,313
Ensembl chr 3:642,471...648,909 		JBrowse link
G FABP5 fatty acid binding protein 5 enables ISO (MGI:6158690|PMID:17512406) UniProt PMID:17512406 MGI:6158690 NCBI chr 4:55,277,831...55,282,585
Ensembl chr 4:55,275,205...55,282,908 		JBrowse link
G IGF2R insulin like growth factor 2 receptor ISO RGD PMID:10470859 RGD:2311628 NCBI chr 1:7,369,485...7,472,480
Ensembl chr 1:7,368,103...7,472,548 		JBrowse link
G LCN12 lipocalin 12 enables ISO PMID:20692383 UniProt PMID:20692383 RGD:8553409
G LOC100515741 UDP-glucuronosyltransferase 2B31 NOT|enables ISO (PMID:20308471) BHF-UCL PMID:20308471 NCBI chr 8:66,251,785...66,297,861 JBrowse link
G LOC100517560 cytochrome P450 27C1 enables ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr15:25,244,585...25,259,545 JBrowse link
G LOC100623255 UDP-glucuronosyltransferase 2B31 NOT|enables ISO (PMID:20308471) BHF-UCL PMID:20308471 NCBI chr 8:65,915,718...65,936,113 JBrowse link
G LRAT lecithin retinol acyltransferase ISO RGD PMID:8460936 PMID:9244401 RGD:1599831 RGD:1599832 NCBI chr 8:74,412,226...74,428,713
Ensembl chr 8:74,409,461...74,419,681 		JBrowse link
G NR2F1 nuclear receptor subfamily 2 group F member 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 2:100,447,661...100,457,510
Ensembl chr 2:100,447,705...100,457,506 		JBrowse link
G NR2F2 nuclear receptor subfamily 2 group F member 2 enables IEA
IBA		 Ensembl
GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:83,076,119...83,090,250
Ensembl chr 7:83,076,124...83,090,535 		JBrowse link
G RARA retinoic acid receptor alpha enables IEA Ensembl GO_REF:0000107 NCBI chr12:22,047,449...22,085,759
Ensembl chr12:22,047,443...22,085,673 		JBrowse link
G RXRA retinoid X receptor alpha enables IEA Ensembl GO_REF:0000107 NCBI chr 1:273,698,842...273,797,622
Ensembl chr 1:273,705,505...273,797,620 		JBrowse link
G SERPINA5 serpin family A member 5 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:115,799,414...115,810,825
Ensembl chr 7:115,802,150...115,810,824 		JBrowse link
G UGT1A6 UDP glucuronosyltransferase 1 family, polypeptide A6 enables ISO (PMID:20308471) BHF-UCL PMID:20308471 NCBI chr15:133,968,693...134,049,029 JBrowse link
retinoid binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRABP1 cellular retinoic acid binding protein 1 enables IEA UniProt GO_REF:0000117 NCBI chr 7:47,602,316...47,608,865
Ensembl chr 7:47,602,192...47,608,970 		JBrowse link
G PTGDS prostaglandin D2 synthase enables ISS UniProt GO_REF:0000024
G RBP4 retinol binding protein 4 enables IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr14:105,037,360...105,044,552
Ensembl chr14:105,037,464...105,044,765 		JBrowse link
G RBP7 retinol binding protein 7 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:70,313,316...70,326,407
Ensembl chr 6:70,313,309...70,326,455 		JBrowse link
retinol binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide enables IEA Ensembl GO_REF:0000107 NCBI chr 8:121,225,485...121,259,262
NCBI chr  X:98,582,002...98,583,002
Ensembl chr 8:121,225,656...121,261,746 		JBrowse link
G LOC100512795 alcohol dehydrogenase class 4 mu/sigma chain enables ISO (PMID:9228021) UniProt
RGD		 PMID:9228021 PMID:10829036 RGD:631904 NCBI chr 8:121,020,683...121,041,735
Ensembl chr 8:121,020,969...121,041,506 		JBrowse link
G LRAT lecithin retinol acyltransferase ISO RGD PMID:2253789 PMID:8460936 PMID:9244401 RGD:1599829 RGD:1599831 RGD:1599832 NCBI chr 8:74,412,226...74,428,713
Ensembl chr 8:74,409,461...74,419,681 		JBrowse link
G PAEP progestagen associated endometrial protein enables IEA UniProt GO_REF:0000043
G RBP1 retinol binding protein 1 ISO RGD PMID:12850148 PMID:16755609 PMID:19965581 RGD:6484697 RGD:6484735 RGD:6893656 NCBI chr13:80,380,958...80,407,328
Ensembl chr13:80,380,962...80,407,458 		JBrowse link
G RBP2 retinol binding protein 2 enables ISO
IEA		 RGD
UniProt		 PMID:12850148 PMID:19965581 GO_REF:0000043 RGD:6484697 RGD:6893656 NCBI chr13:80,321,024...80,346,032
Ensembl chr13:80,320,931...80,352,975 		JBrowse link
G RBP3 retinol binding protein 3 enables ISO
IEA
IBA		 RGD
TreeGrafter
GO_Central		 PMID:8282025 GO_REF:0000033 GO_REF:0000118 RGD:6893658 NCBI chr14:88,491,701...88,503,388
Ensembl chr14:88,490,013...88,504,510 		JBrowse link
G RBP4 retinol binding protein 4 enables ISO
IEA
IDA
IBA		 (PMID:9757135) RGD
UniProt
Ensembl
GO_Central
TreeGrafter		 PMID:9260907 PMID:9757135 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 RGD:6484695 NCBI chr14:105,037,360...105,044,552
Ensembl chr14:105,037,464...105,044,765 		JBrowse link
G STRA6 signaling receptor and transporter of retinol STRA6 enables IEA UniProt GO_REF:0000043 NCBI chr 7:59,317,930...59,347,274
Ensembl chr 7:59,318,011...59,347,266 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 18689
    binding 16248
      lipid binding 826
        isoprenoid binding 38
          abscisic acid binding 1
          gibberellin binding 0
          juvenile hormone binding 0
          retinoid binding + 36
          xanthophyll binding 0
paths to the root