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ONTOLOGY REPORT - ANNOTATIONS


Term:secondary metabolic process
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Accession:GO:0019748 term browser browse the term
Definition:The chemical reactions and pathways resulting in many of the chemical changes of compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. In multicellular organisms secondary metabolism is generally carried out in specific cell types, and may be useful for the organism as a whole. In unicellular organisms, secondary metabolism is often used for the production of antibiotics or for the utilization and acquisition of unusual nutrients.
Synonyms:exact_synonym: secondary metabolism;   secondary metabolite metabolic process;   secondary metabolite metabolism
 xref: Wikipedia:Secondary_metabolism



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secondary metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACMSD aminocarboxymuconate semialdehyde decarboxylase involved_in IBA
IEA
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr 2:134,838,616...134,902,034
Ensembl chr 2:134,838,616...134,902,034
JBrowse link
G OVCA2 OVCA2 serine hydrolase domain containing involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:2,042,022...2,043,425
Ensembl chr17:2,042,022...2,043,425
JBrowse link
aflatoxin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR7A3 aldo-keto reductase family 7 member A3 ISO RGD PMID:12727802 RGD:1304380 NCBI chr 1:19,274,229...19,288,770
Ensembl chr 1:19,282,573...19,288,770
JBrowse link
G GSTA3 glutathione S-transferase alpha 3 acts_upstream_of_or_within ISO (MGI:4429761|PMID:19850059) MGI PMID:19850059 MGI:4429761 NCBI chr 6:52,896,646...52,909,698
Ensembl chr 6:52,896,639...52,909,698
JBrowse link
G NFE2L2 NFE2 like bZIP transcription factor 2 involved_in ISO
IEA
RGD
Ensembl
PMID:27071940 GO_REF:0000107 RGD:12910550 NCBI chr 2:177,230,303...177,264,727
Ensembl chr 2:177,218,667...177,392,756
JBrowse link
aflatoxin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHR aryl hydrocarbon receptor ISO RGD PMID:28959666 RGD:401794432 NCBI chr 7:17,298,652...17,346,147
Ensembl chr 7:16,916,359...17,346,152
JBrowse link
G AKR7A3 aldo-keto reductase family 7 member A3 ISO RGD PMID:8234296 RGD:632009 NCBI chr 1:19,274,229...19,288,770
Ensembl chr 1:19,282,573...19,288,770
JBrowse link
G CPT1A carnitine palmitoyltransferase 1A involved_in ISO
IEA
RGD
Ensembl
PMID:28959666 GO_REF:0000107 RGD:401794432 NCBI chr11:68,754,620...68,844,277
Ensembl chr11:68,754,620...68,844,410
JBrowse link
G CYP1A2 cytochrome P450 family 1 subfamily A member 2 involved_in TAS Reactome Reactome:R-HSA-5423646 NCBI chr15:74,748,845...74,756,607
Ensembl chr15:74,748,845...74,756,607
JBrowse link
G CYP2A13 cytochrome P450 family 2 subfamily A member 13 involved_in TAS Reactome Reactome:R-HSA-5423646 NCBI chr19:41,088,451...41,096,195
Ensembl chr19:41,088,451...41,096,195
JBrowse link
G CYP2W1 cytochrome P450 family 2 subfamily W member 1 involved_in IDA (PMID:16551781) UniProt PMID:16551781 NCBI chr 7:983,181...989,640
Ensembl chr 7:983,181...989,640
JBrowse link
G CYP3A4 cytochrome P450 family 3 subfamily A member 4 involved_in TAS Reactome Reactome:R-HSA-5423646 NCBI chr 7:99,756,967...99,784,184
Ensembl chr 7:99,756,960...99,784,248
JBrowse link
G CYP3A5 cytochrome P450 family 3 subfamily A member 5 involved_in TAS Reactome Reactome:R-HSA-5423646 NCBI chr 7:99,648,194...99,679,996
Ensembl chr 7:99,648,194...99,679,996
JBrowse link
G LCAT lecithin-cholesterol acyltransferase ISO RGD PMID:28959666 RGD:401794432 NCBI chr16:67,939,750...67,944,120
Ensembl chr16:67,939,750...67,944,131
JBrowse link
G LIPC lipase C, hepatic type ISO RGD PMID:28959666 RGD:401794432 NCBI chr15:58,431,991...58,569,844
Ensembl chr15:58,410,569...58,569,844
JBrowse link
G SCARB1 scavenger receptor class B member 1 ISO RGD PMID:28959666 RGD:401794432 NCBI chr12:124,776,856...124,863,864
Ensembl chr12:124,776,856...124,882,668
JBrowse link
benzylpenicillin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCC2 ATP binding cassette subfamily C member 2 ISO RGD PMID:19255943 RGD:11081014 NCBI chr10:99,782,640...99,852,594
Ensembl chr10:99,782,640...99,852,594
JBrowse link
coumarin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP2A6 cytochrome P450 family 2 subfamily A member 6 involved_in IDA (PMID:19029318) BHF-UCL PMID:19029318 NCBI chr19:40,843,541...40,850,447
Ensembl chr19:40,843,541...40,850,447
JBrowse link
G PON3 paraoxonase 3 ISO RGD PMID:12946270 RGD:1303961 NCBI chr 7:95,359,872...95,396,375
Ensembl chr 7:95,359,872...95,396,375
JBrowse link
coumarin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 involved_in ISO
IEA
Coumarin derivative metabolism RGD
Ensembl
PMID:11780761 GO_REF:0000107 RGD:2306676 NCBI chr15:74,719,542...74,725,528
Ensembl chr15:74,719,542...74,725,536
JBrowse link
G CYP2A13 cytochrome P450 family 2 subfamily A member 13 involved_in ISO
IEA
IBA
TAS
RGD
TreeGrafter
GO_Central
Reactome
PMID:12162851 GO_REF:0000033 GO_REF:0000118 RGD:727640 Reactome:R-HSA-211881 NCBI chr19:41,088,451...41,096,195
Ensembl chr19:41,088,451...41,096,195
JBrowse link
G CYP2A6 cytochrome P450 family 2 subfamily A member 6 involved_in TAS
IEA
IBA
IDA
(PMID:19651758) Reactome
TreeGrafter
GO_Central
BHF-UCL
PMID:19651758 GO_REF:0000033 GO_REF:0000118 Reactome:R-HSA-76453 NCBI chr19:40,843,541...40,850,447
Ensembl chr19:40,843,541...40,850,447
JBrowse link
G CYP2A7 cytochrome P450 family 2 subfamily A member 7 involved_in IEA
IBA
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr19:40,875,439...40,882,231
Ensembl chr19:40,875,439...40,882,752
JBrowse link
G CYP2D6 cytochrome P450 family 2 subfamily D member 6 involved_in IDA (PMID:19438707) BHF-UCL PMID:19438707 NCBI chr22:42,126,499...42,130,810
Ensembl chr22:42,126,499...42,130,865
JBrowse link
G UGT1A7 UDP glucuronosyltransferase family 1 member A7 involved_in IC (PMID:19996319) BHF-UCL PMID:19996319 NCBI chr 2:233,681,901...233,773,300
Ensembl chr 2:233,681,901...233,773,300
JBrowse link
G UGT1A8 UDP glucuronosyltransferase family 1 member A8 involved_in IC (PMID:19996319) BHF-UCL PMID:19996319 NCBI chr 2:233,617,633...233,773,300
Ensembl chr 2:233,617,633...233,773,300
JBrowse link
daunorubicin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1A1 aldo-keto reductase family 1 member A1 involved_in IDA (PMID:18276838) UniProt PMID:18276838 NCBI chr 1:45,550,826...45,570,049
Ensembl chr 1:45,550,543...45,570,049
JBrowse link
G AKR1B1 aldo-keto reductase family 1 member B involved_in IMP (PMID:20837989) UniProt PMID:20837989 NCBI chr 7:134,442,350...134,459,239
Ensembl chr 7:134,442,356...134,459,284
JBrowse link
G AKR1B10 aldo-keto reductase family 1 member B10 involved_in IMP (PMID:20837989) UniProt PMID:20837989 NCBI chr 7:134,527,567...134,541,412
Ensembl chr 7:134,527,567...134,541,412
JBrowse link
G AKR1C1 aldo-keto reductase family 1 member C1 involved_in IMP
IEA
IBA
(PMID:20837989) UniProt
TreeGrafter
GO_Central
PMID:20837989 GO_REF:0000033 GO_REF:0000118 NCBI chr10:4,963,415...4,983,283
Ensembl chr10:4,963,253...4,983,283
JBrowse link
G AKR1C2 aldo-keto reductase family 1 member C2 involved_in IMP
IEA
IBA
(PMID:20837989) UniProt
TreeGrafter
GO_Central
PMID:20837989 GO_REF:0000033 GO_REF:0000118 NCBI chr10:4,987,775...5,018,000
Ensembl chr10:4,987,775...5,018,031
JBrowse link
G AKR1C3 aldo-keto reductase family 1 member C3 involved_in IMP
IBA
IEA
(PMID:20837989) UniProt
GO_Central
TreeGrafter
PMID:20837989 GO_REF:0000033 GO_REF:0000118 NCBI chr10:5,048,781...5,107,686
Ensembl chr10:5,035,354...5,107,686
JBrowse link
G AKR1C4 aldo-keto reductase family 1 member C4 involved_in IMP
IBA
IEA
(PMID:20837989) UniProt
GO_Central
TreeGrafter
PMID:20837989 GO_REF:0000033 GO_REF:0000118 NCBI chr10:5,196,837...5,218,949
Ensembl chr10:5,195,462...5,218,949
JBrowse link
G AKR7A2 aldo-keto reductase family 7 member A2 involved_in IMP (PMID:20837989) UniProt PMID:20837989 NCBI chr 1:19,302,708...19,312,146
Ensembl chr 1:19,303,965...19,312,144
JBrowse link
G CBR4 carbonyl reductase 4 involved_in IMP (PMID:20837989) UniProt PMID:20837989 NCBI chr 4:168,894,486...169,010,255
Ensembl chr 4:168,863,770...169,010,275
JBrowse link
doxorubicin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1A1 aldo-keto reductase family 1 member A1 involved_in IDA (PMID:18276838) UniProt PMID:18276838 NCBI chr 1:45,550,826...45,570,049
Ensembl chr 1:45,550,543...45,570,049
JBrowse link
G AKR1B1 aldo-keto reductase family 1 member B involved_in IMP (PMID:20837989) UniProt PMID:20837989 NCBI chr 7:134,442,350...134,459,239
Ensembl chr 7:134,442,356...134,459,284
JBrowse link
G AKR1B10 aldo-keto reductase family 1 member B10 involved_in IMP (PMID:20837989) UniProt PMID:20837989 NCBI chr 7:134,527,567...134,541,412
Ensembl chr 7:134,527,567...134,541,412
JBrowse link
G AKR1C1 aldo-keto reductase family 1 member C1 involved_in IMP
IEA
IBA
(PMID:20837989) UniProt
TreeGrafter
GO_Central
PMID:20837989 GO_REF:0000033 GO_REF:0000118 NCBI chr10:4,963,415...4,983,283
Ensembl chr10:4,963,253...4,983,283
JBrowse link
G AKR1C2 aldo-keto reductase family 1 member C2 involved_in IMP
IEA
IBA
(PMID:20837989) UniProt
TreeGrafter
GO_Central
PMID:20837989 GO_REF:0000033 GO_REF:0000118 NCBI chr10:4,987,775...5,018,000
Ensembl chr10:4,987,775...5,018,031
JBrowse link
G AKR1C3 aldo-keto reductase family 1 member C3 involved_in IMP
IBA
IEA
(PMID:20837989) UniProt
GO_Central
TreeGrafter
PMID:20837989 GO_REF:0000033 GO_REF:0000118 NCBI chr10:5,048,781...5,107,686
Ensembl chr10:5,035,354...5,107,686
JBrowse link
G AKR1C4 aldo-keto reductase family 1 member C4 involved_in IMP
IBA
IEA
(PMID:20837989) UniProt
GO_Central
TreeGrafter
PMID:20837989 GO_REF:0000033 GO_REF:0000118 NCBI chr10:5,196,837...5,218,949
Ensembl chr10:5,195,462...5,218,949
JBrowse link
G AKR7A2 aldo-keto reductase family 7 member A2 involved_in IMP (PMID:20837989) UniProt PMID:20837989 NCBI chr 1:19,302,708...19,312,146
Ensembl chr 1:19,303,965...19,312,144
JBrowse link
G CBR4 carbonyl reductase 4 involved_in IMP (PMID:20837989) UniProt PMID:20837989 NCBI chr 4:168,894,486...169,010,255
Ensembl chr 4:168,863,770...169,010,275
JBrowse link
G SULT1C4 sulfotransferase family 1C member 4 involved_in IDA (PMID:26948952) UniProt PMID:26948952 NCBI chr 2:108,377,954...108,388,989
Ensembl chr 2:108,377,911...108,388,989
JBrowse link
insecticide metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 involved_in ISO
IEA
Deltamethrin (pyrethroid) RGD
Ensembl
PMID:16169030 GO_REF:0000107 RGD:2306660 NCBI chr15:74,719,542...74,725,528
Ensembl chr15:74,719,542...74,725,536
JBrowse link
G HSD17B3 hydroxysteroid 17-beta dehydrogenase 3 ISO methoxychlor RGD PMID:18401575 RGD:4890969 NCBI chr 9:96,235,306...96,302,176
Ensembl chr 9:96,235,306...96,302,176
JBrowse link
G HSD3B1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 ISO methoxychlor RGD PMID:18401575 RGD:4890969 NCBI chr 1:119,507,203...119,515,058
Ensembl chr 1:119,507,198...119,515,054
JBrowse link
G STAR steroidogenic acute regulatory protein ISO methoxychlor RGD PMID:18401575 RGD:4890969 NCBI chr 8:38,142,700...38,150,952
Ensembl chr 8:38,142,700...38,150,992
JBrowse link
melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASIP agouti signaling protein acts_upstream_of_or_within
involved_in
ISO
ISS
IEA
(MGI:76308|PMID:7665913) MGI
UniProt
Ensembl
PMID:7665913 GO_REF:0000024 GO_REF:0000107 MGI:76308 NCBI chr20:34,186,493...34,269,344
Ensembl chr20:34,194,569...34,269,344
JBrowse link
G CITED1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in IEA
ISS
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr  X:72,301,646...72,307,157
Ensembl chr  X:72,301,638...72,307,187
JBrowse link
G CTNS cystinosin, lysosomal cystine transporter involved_in IEA UniProt GO_REF:0000043 NCBI chr17:3,636,459...3,663,103
Ensembl chr17:3,636,459...3,663,103
JBrowse link
G DCT dopachrome tautomerase acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:76308|PMID:7665913) MGI
Ensembl
UniProt
PMID:7665913 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 MGI:76308 NCBI chr13:94,436,811...94,549,406
Ensembl chr13:94,436,811...94,479,682
JBrowse link
G DDT D-dopachrome tautomerase involved_in IEA UniProt GO_REF:0000043 NCBI chr22:23,971,370...23,980,504
Ensembl chr22:23,970,542...23,980,525
JBrowse link
G DDTL D-dopachrome tautomerase like involved_in IEA UniProt GO_REF:0000043 NCBI chr22:23,966,888...23,972,556
Ensembl chr22:23,966,888...23,972,556
Ensembl chr22:23,966,888...23,972,556
JBrowse link
G MC1R melanocortin 1 receptor acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:76308|PMID:7665913) MGI
Ensembl
PMID:7665913 GO_REF:0000107 MGI:76308 NCBI chr16:89,918,862...89,920,972
Ensembl chr16:89,912,119...89,920,973
JBrowse link
G MFSD12 major facilitator superfamily domain containing 12 involved_in IEA UniProt GO_REF:0000043 NCBI chr19:3,538,275...3,557,586
Ensembl chr19:3,538,261...3,574,290
JBrowse link
G MYO5A myosin VA acts_upstream_of_or_within ISO (MGI:76308|PMID:7665913) MGI PMID:7665913 MGI:76308 NCBI chr15:52,307,283...52,529,050
Ensembl chr15:52,307,281...52,529,132
JBrowse link
G OCA2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within
involved_in
ISO
IBA
IEA
(MGI:1202196|PMID:9548375), (MGI:76308|PMID:7665913) MGI
GO_Central
TreeGrafter
Ensembl
PMID:7665913 PMID:9548375 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:1202196 MGI:76308 NCBI chr15:27,719,008...28,099,315
Ensembl chr15:27,754,875...28,099,315
JBrowse link
G PMEL premelanosome protein acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:76308|PMID:7665913) MGI
Ensembl
UniProt
PMID:7665913 GO_REF:0000043 GO_REF:0000107 MGI:76308 NCBI chr12:55,954,105...55,966,709
Ensembl chr12:55,954,105...55,973,317
JBrowse link
G SLC24A5 solute carrier family 24 member 5 acts_upstream_of
involved_in
ISO
IEA
(MGI:3775882|PMID:18166528) MGI
Ensembl
PMID:18166528 GO_REF:0000107 MGI:3775882 NCBI chr15:48,120,990...48,142,672
Ensembl chr15:48,120,990...48,142,672
JBrowse link
G SLC45A2 solute carrier family 45 member 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:33,944,623...33,984,693
Ensembl chr 5:33,944,623...33,984,693
JBrowse link
G TRPC1 transient receptor potential cation channel subfamily C member 1 involved_in IDA (PMID:8126111) CACAO PMID:8126111 NCBI chr 3:142,724,034...142,807,888
Ensembl chr 3:142,724,034...142,807,888
JBrowse link
G TYR tyrosinase acts_upstream_of_or_within
involved_in
ISO
IEA
IBA
IDA
(MGI:1202196|PMID:9548375)
(PMID:8126111)
(MGI:76308|PMID:7665913)
MGI
TreeGrafter
GO_Central
UniProt
CACAO
Ensembl
PMID:7665913 PMID:8126111 PMID:9548375 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 MGI:1202196 MGI:76308 NCBI chr11:89,177,875...89,295,759
Ensembl chr11:89,177,875...89,295,759
JBrowse link
G TYRP1 tyrosinase related protein 1 involved_in IEA
TAS
UniProt
Reactome
GO_REF:0000041 GO_REF:0000043 Reactome:R-HSA-5662702 NCBI chr 9:12,693,385...12,710,285
Ensembl chr 9:12,685,439...12,710,285
JBrowse link
melanin biosynthetic process from tyrosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCT dopachrome tautomerase involved_in TAS
IEA
IBA
ISS
(PMID:8206391) PINC
TreeGrafter
GO_Central
Ensembl
UniProt
PMID:8206391 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr13:94,436,811...94,549,406
Ensembl chr13:94,436,811...94,479,682
JBrowse link
G OCA2 OCA2 melanosomal transmembrane protein involved_in IDA (PMID:25513726), (PMID:32966160) UniProt PMID:25513726 PMID:32966160 NCBI chr15:27,719,008...28,099,315
Ensembl chr15:27,754,875...28,099,315
JBrowse link
G SLC45A2 solute carrier family 45 member 2 involved_in IDA
IEA
ISS
(PMID:32966160) UniProt
Ensembl
PMID:32966160 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:33,944,623...33,984,693
Ensembl chr 5:33,944,623...33,984,693
JBrowse link
G TYR tyrosinase involved_in TAS (PMID:7704033) PINC PMID:7704033 NCBI chr11:89,177,875...89,295,759
Ensembl chr11:89,177,875...89,295,759
JBrowse link
melanin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2154874|PMID:11709185) MGI
Ensembl
PMID:11709185 GO_REF:0000107 MGI:2154874 NCBI chr18:63,123,346...63,320,090
Ensembl chr18:63,123,346...63,320,128
JBrowse link
G MYO5A myosin VA acts_upstream_of_or_within ISO (MGI:1202196|PMID:9548375) MGI PMID:9548375 MGI:1202196 NCBI chr15:52,307,283...52,529,050
Ensembl chr15:52,307,281...52,529,132
JBrowse link
G TYRP1 tyrosinase related protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1202196|PMID:9548375) MGI
Ensembl
PMID:9548375 GO_REF:0000107 MGI:1202196 NCBI chr 9:12,693,385...12,710,285
Ensembl chr 9:12,685,439...12,710,285
JBrowse link
G VHL von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO (MGI:5429122|PMID:22627278) MGI PMID:22627278 MGI:5429122 NCBI chr 3:10,141,778...10,153,667
Ensembl chr 3:10,141,778...10,153,667
JBrowse link
negative regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MFSD12 major facilitator superfamily domain containing 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:3,538,275...3,557,586
Ensembl chr19:3,538,261...3,574,290
JBrowse link
G OPN3 opsin 3 involved_in IMP (PMID:31097585) UniProt PMID:31097585 NCBI chr 1:241,593,124...241,640,369
Ensembl chr 1:241,590,102...241,677,376
Ensembl chr 1:241,590,102...241,677,376
JBrowse link
G RAPGEF2 Rap guanine nucleotide exchange factor 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr 4:159,103,079...159,360,173
Ensembl chr 4:159,103,013...159,360,174
JBrowse link
G SLC24A5 solute carrier family 24 member 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3775882|PMID:18166528) MGI
Ensembl
PMID:18166528 GO_REF:0000107 MGI:3775882 NCBI chr15:48,120,990...48,142,672
Ensembl chr15:48,120,990...48,142,672
JBrowse link
G WNT5A Wnt family member 5A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:55,465,715...55,505,263
Ensembl chr 3:55,465,715...55,490,539
JBrowse link
phytoalexin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDC dopa decarboxylase ISO scoparone RGD PMID:19185027 RGD:5128879 NCBI chr 7:50,458,442...50,565,405
Ensembl chr 7:50,458,436...50,565,405
JBrowse link
G TH tyrosine hydroxylase involved_in ISO
IEA
scoparone RGD
Ensembl
PMID:19185027 GO_REF:0000107 RGD:5128879 NCBI chr11:2,163,929...2,171,815
Ensembl chr11:2,163,929...2,171,815
JBrowse link
positive regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APPL1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 involved_in IMP (PMID:21291857) UniProt PMID:21291857 NCBI chr 3:57,227,729...57,273,471
Ensembl chr 3:57,227,726...57,278,105
JBrowse link
G ASIP agouti signaling protein involved_in IEA
IBA
Ensembl
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr20:34,186,493...34,269,344
Ensembl chr20:34,194,569...34,269,344
JBrowse link
G ATP7A ATPase copper transporting alpha involved_in IMP (PMID:11092760) UniProt PMID:11092760 NCBI chr  X:77,910,693...78,050,395
Ensembl chr  X:77,910,690...78,050,395
JBrowse link
G CDH3 cadherin 3 involved_in IMP (PMID:23334344) UniProt PMID:23334344 NCBI chr16:68,645,310...68,733,771
Ensembl chr16:68,636,189...68,727,468
JBrowse link
G GIPC1 GIPC PDZ domain containing family member 1 involved_in IMP (PMID:21291857) UniProt PMID:21291857 NCBI chr19:14,477,762...14,496,127
Ensembl chr19:14,477,760...14,496,149
JBrowse link
G OPN3 opsin 3 involved_in IMP (PMID:28842328) UniProt PMID:28842328 NCBI chr 1:241,593,124...241,640,369
Ensembl chr 1:241,590,102...241,677,376
Ensembl chr 1:241,590,102...241,677,376
JBrowse link
G PMEL premelanosome protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:55,954,105...55,966,709
Ensembl chr12:55,954,105...55,973,317
JBrowse link
G RAB38 RAB38, member RAS oncogene family involved_in ISO
IEA
RGD
Ensembl
PMID:17043139 GO_REF:0000107 RGD:152025192 NCBI chr11:87,803,715...88,175,443
Ensembl chr11:88,113,251...88,175,443
JBrowse link
G TYRP1 tyrosinase related protein 1 involved_in IMP
IEA
(PMID:21996312) CACAO
Ensembl
PMID:21996312 GO_REF:0000107 NCBI chr 9:12,693,385...12,710,285
Ensembl chr 9:12,685,439...12,710,285
JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 involved_in IC (PMID:24769727) BHF-UCL PMID:24769727 NCBI chr 2:144,384,081...144,520,119
Ensembl chr 2:144,364,364...144,521,057
JBrowse link
regulation of melanin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNS cystinosin, lysosomal cystine transporter involved_in IMP (PMID:22649030) UniProt PMID:22649030 NCBI chr17:3,636,459...3,663,103
Ensembl chr17:3,636,459...3,663,103
JBrowse link
G MFSD12 major facilitator superfamily domain containing 12 involved_in IMP
IBA
IEA
(PMID:33208952) UniProt
GO_Central
Ensembl
PMID:33208952 GO_REF:0000033 GO_REF:0000107 NCBI chr19:3,538,275...3,557,586
Ensembl chr19:3,538,261...3,574,290
JBrowse link
G SLC7A11 solute carrier family 7 member 11 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3588610|PMID:16037214) MGI
Ensembl
PMID:16037214 GO_REF:0000107 MGI:3588610 NCBI chr 4:138,164,097...138,312,671
Ensembl chr 4:138,164,097...138,242,349
JBrowse link
secondary metabolite biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LACTB2 lactamase beta 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:70,637,266...70,669,185
Ensembl chr 8:70,635,318...70,669,185
JBrowse link
siderophore biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BDH2 3-hydroxybutyrate dehydrogenase 2 involved_in IEA
IBA
ISS
InterPro
GO_Central
TreeGrafter
UniProt
GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr 4:103,077,592...103,099,834
Ensembl chr 4:103,077,592...103,099,870
JBrowse link
G SLC9B2 solute carrier family 9 member B2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:103,018,029...103,077,319
Ensembl chr 4:103,019,868...103,085,829
JBrowse link
toxin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP1A2 cytochrome P450 family 1 subfamily A member 2 involved_in IDA (PMID:11511187) BHF-UCL PMID:11511187 NCBI chr15:74,748,845...74,756,607
Ensembl chr15:74,748,845...74,756,607
JBrowse link
toxin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARL1 ADP ribosylation factor like GTPase 1 involved_in IDA (PMID:9624189) UniProt PMID:9624189 NCBI chr12:101,393,116...101,407,820
Ensembl chr12:101,393,116...101,407,772
JBrowse link
G AS3MT arsenite methyltransferase involved_in IDA
IEA
IBA
(PMID:25997655) UniProt
TreeGrafter
GO_Central
PMID:25997655 GO_REF:0000033 GO_REF:0000118 NCBI chr10:102,869,470...102,901,899
Ensembl chr10:102,869,470...102,901,899
JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3713192|PMID:17166882) MGI
Ensembl
PMID:17166882 GO_REF:0000107 MGI:3713192 NCBI chr15:74,719,542...74,725,528
Ensembl chr15:74,719,542...74,725,536
JBrowse link
G CYP1A2 cytochrome P450 family 1 subfamily A member 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3713192|PMID:17166882) MGI
Ensembl
PMID:17166882 GO_REF:0000107 MGI:3713192 NCBI chr15:74,748,845...74,756,607
Ensembl chr15:74,748,845...74,756,607
JBrowse link
G CYP1B1 cytochrome P450 family 1 subfamily B member 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1333452|PMID:10051580), (MGI:3713192|PMID:17166882) MGI
Ensembl
PMID:10051580 PMID:17166882 GO_REF:0000107 MGI:1333452 MGI:3713192 NCBI chr 2:38,067,509...38,076,151
Ensembl chr 2:38,066,973...38,109,902
JBrowse link
G FMO1 flavin containing dimethylaniline monoxygenase 1 involved_in IDA (PMID:15144220) BHF-UCL PMID:15144220 NCBI chr 1:171,248,494...171,285,978
Ensembl chr 1:171,248,471...171,285,978
JBrowse link
G FMO2 flavin containing dimethylaniline monoxygenase 2 involved_in IDA (PMID:11744609) BHF-UCL PMID:11744609 NCBI chr 1:171,185,208...171,212,686
Ensembl chr 1:171,185,249...171,212,686
JBrowse link
G N6AMT1 N-6 adenine-specific DNA methyltransferase 1 involved_in IDA (PMID:25997655) UniProt PMID:25997655 NCBI chr21:28,575,598...28,885,367
Ensembl chr21:28,872,191...28,885,371
JBrowse link
G PAM peptidylglycine alpha-amidating monooxygenase ISO enhances lethality of scorpion neurotoxin BmK ITa1 RGD PMID:12721493 RGD:6483565 NCBI chr 5:102,754,783...103,031,105
Ensembl chr 5:102,753,981...103,029,730
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19761
    metabolic process 12497
      secondary metabolic process 76
        (+)-kotanin metabolic process + 0
        (17Z)-protosta-17(20),24-dien-3beta-ol metabolic process + 0
        N',N'',N'''-triacetylfusarinine C metabolic process + 0
        arugosin metabolic process + 0
        asperthecin metabolic process + 0
        cordyol C metabolic process + 0
        cspyrone B1 metabolic process + 0
        cyanogenic glycoside metabolic process + 0
        dehydroaustinol metabolic process + 0
        demethylkotanin metabolic process + 0
        diorcinol metabolic process + 0
        emericellamide metabolic process + 0
        emericellin metabolic process + 0
        emodin metabolic process + 0
        endocrocin metabolic process + 0
        ergot alkaloid metabolic process + 0
        fumagillin biosynthetic process + 0
        fumonisin metabolic process + 0
        gerfelin metabolic process + 0
        glycosinolate metabolic process + 0
        helvolic acid metabolic process + 0
        melanin metabolic process + 28
        monodictyphenone metabolic process + 0
        o-orsellinic acid metabolic process + 0
        ocellus pigment metabolic process + 0
        ochratoxin A metabolic process + 0
        orcinol metabolic process + 0
        orlandin metabolic process + 0
        penicillin metabolic process + 1
        phenylpropanoid metabolic process + 8
        pheromone metabolic process + 0
        phytochelatin metabolic process + 0
        polyketide metabolic process + 10
        regulation of secondary metabolic process + 16
        secondary metabolite biosynthetic process + 30
        secondary metabolite catabolic process + 0
        shamixanthone metabolic process + 0
        siderophore metabolic process + 2
        tensidol A metabolic process + 0
        tensidol B metabolic process + 0
        toxin metabolic process + 26
        violaceol I metabolic process + 0
        violaceol II metabolic process + 0
paths to the root