ONTOLOGY REPORT - ANNOTATIONS
Term: secondary metabolic process
Accession: GO:0019748
browse the term
Definition: The chemical reactions and pathways resulting in many of the chemical changes of compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. In multicellular organisms secondary metabolism is generally carried out in specific cell types, and may be useful for the organism as a whole. In unicellular organisms, secondary metabolism is often used for the production of antibiotics or for the utilization and acquisition of unusual nutrients.
Synonyms: exact_synonym: secondary metabolism; secondary metabolite metabolic process; secondary metabolite metabolism
xref: Wikipedia:Secondary_metabolism
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ACMSD
aminocarboxymuconate semialdehyde decarboxylase
involved_in
IEA
TreeGrafter
GO_REF:0000118
NCBI chr19:37,658,999...37,725,426
Ensembl chr19:37,659,226...37,725,172
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DPH1
diphthamide biosynthesis 1
involved_in
IEA
TreeGrafter
GO_REF:0000118
NCBI chr 9:46,137,573...46,147,829
Ensembl chr 9:46,137,660...46,147,854
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OVCA2
OVCA2 serine hydrolase domain containing
involved_in
IEA
TreeGrafter
GO_REF:0000118
NCBI chr 9:46,147,058...46,148,533
Ensembl chr 9:46,147,216...46,148,195
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LOC474938
glutathione S-transferase A2
acts_upstream_of_or_within
ISO
(PMID:19850059)
MGI
PMID:19850059
NCBI chr12:20,349,133...20,365,023
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NFE2L2
NFE2 like bZIP transcription factor 2
ISO
RGD
PMID:27071940
RGD:12910550
NCBI chr36:20,989,205...21,087,044
Ensembl chr36:20,989,360...21,012,524
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AHR
aryl hydrocarbon receptor
ISO
RGD
PMID:28959666
RGD:401794432
NCBI chr14:31,743,704...31,793,484
Ensembl chr14:31,686,170...31,791,444
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CPT1A
carnitine palmitoyltransferase 1A
ISO
RGD
PMID:28959666
RGD:401794432
NCBI chr18:49,136,691...49,190,117
Ensembl chr18:49,136,691...49,190,117
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CYP2W1
cytochrome P450 family 2 subfamily W member 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:15,883,248...15,889,508
Ensembl chr 6:15,881,636...15,889,186
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LCAT
lecithin-cholesterol acyltransferase
ISO
RGD
PMID:28959666
RGD:401794432
NCBI chr 5:81,556,047...81,559,313
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LIPC
lipase C, hepatic type
ISO
RGD
PMID:28959666
RGD:401794432
NCBI chr30:23,432,460...23,584,037
Ensembl chr30:23,432,493...23,584,037
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SCARB1
scavenger receptor class B member 1
ISO
RGD
PMID:28959666
RGD:401794432
NCBI chr26:5,035,797...5,122,383
Ensembl chr26:5,049,407...5,121,468
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ABCC2
ATP binding cassette subfamily C member 2
ISO
RGD
PMID:19255943
RGD:11081014
NCBI chr28:12,670,885...12,740,124
Ensembl chr28:12,670,885...12,740,740
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CYP2A7
cytochrome P450, family 2, subfamily A, polypeptide 7
involved_in
ISO
(PMID:19029318)
BHF-UCL
PMID:19029318
NCBI chr 1:112,900,508...112,906,745
Ensembl chr 1:112,900,403...112,907,076
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PON3
paraoxonase 3
ISO
RGD
PMID:12946270
RGD:1303961
NCBI chr14:20,615,180...20,642,807
Ensembl chr14:20,565,641...20,642,985
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CYP1A1
cytochrome P450 family 1 subfamily A member 1
ISO
Coumarin derivative metabolism
RGD
PMID:11780761
RGD:2306676
NCBI chr30:37,793,277...37,799,535
Ensembl chr30:37,793,508...37,796,866
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CYP2A13
cytochrome P450 family 2 subfamily A polypeptide 13
involved_in
ISO IEA
RGD TreeGrafter
PMID:12162851
GO_REF:0000118 RGD:727640
NCBI chr 1:112,932,246...112,938,248
Ensembl chr 1:112,931,985...112,938,350
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CYP2A7
cytochrome P450, family 2, subfamily A, polypeptide 7
involved_in
IEA
TreeGrafter
GO_REF:0000118
NCBI chr 1:112,900,508...112,906,745
Ensembl chr 1:112,900,403...112,907,076
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CYP2D15
cytochrome P450 family 2 subfamily D member 15
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr10:23,255,259...23,259,380
Ensembl chr10:23,255,249...23,259,298
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AKR1A1
aldo-keto reductase family 1 member A1
involved_in
ISO
(PMID:18276838)
UniProt
PMID:18276838
NCBI chr15:14,792,398...14,808,805
Ensembl chr15:14,742,012...14,808,592
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AKR1B1
aldo-keto reductase family 1 member B
involved_in
ISO
(PMID:20837989)
UniProt
PMID:20837989
NCBI chr14:2,991,888...3,006,941
Ensembl chr14:2,991,888...3,006,940
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AKR1C3
aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)
involved_in
ISO
(PMID:20837989)
UniProt
PMID:20837989
NCBI chr 2:30,661,333...30,691,283
Ensembl chr 2:30,674,558...30,690,043
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AKR7A2
aldo-keto reductase family 7 member A2
involved_in
ISO
(PMID:20837989)
UniProt
PMID:20837989
NCBI chr 2:79,334,179...79,343,880
Ensembl chr 2:79,334,205...79,343,007
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CBR4
carbonyl reductase 4
involved_in
ISO
(PMID:20837989)
UniProt
PMID:20837989
NCBI chr25:19,475,562...19,618,144
Ensembl chr25:19,597,518...19,618,180
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AKR1A1
aldo-keto reductase family 1 member A1
involved_in
ISO
(PMID:18276838)
UniProt
PMID:18276838
NCBI chr15:14,792,398...14,808,805
Ensembl chr15:14,742,012...14,808,592
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AKR1B1
aldo-keto reductase family 1 member B
involved_in
ISO
(PMID:20837989)
UniProt
PMID:20837989
NCBI chr14:2,991,888...3,006,941
Ensembl chr14:2,991,888...3,006,940
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AKR1C3
aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)
involved_in
ISO
(PMID:20837989)
UniProt
PMID:20837989
NCBI chr 2:30,661,333...30,691,283
Ensembl chr 2:30,674,558...30,690,043
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AKR7A2
aldo-keto reductase family 7 member A2
involved_in
ISO
(PMID:20837989)
UniProt
PMID:20837989
NCBI chr 2:79,334,179...79,343,880
Ensembl chr 2:79,334,205...79,343,007
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CBR4
carbonyl reductase 4
involved_in
ISO
(PMID:20837989)
UniProt
PMID:20837989
NCBI chr25:19,475,562...19,618,144
Ensembl chr25:19,597,518...19,618,180
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SULT1C4
sulfotransferase family 1C member 4
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr10:35,494,614...35,504,162
Ensembl chr10:35,495,727...35,504,125
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CYP1A1
cytochrome P450 family 1 subfamily A member 1
ISO
Deltamethrin (pyrethroid)
RGD
PMID:16169030
RGD:2306660
NCBI chr30:37,793,277...37,799,535
Ensembl chr30:37,793,508...37,796,866
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HSD17B3
hydroxysteroid 17-beta dehydrogenase 3
ISO
methoxychlor
RGD
PMID:18401575
RGD:4890969
NCBI chr 1:70,551,013...70,586,364
Ensembl chr 1:70,487,334...70,586,368
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STAR
steroidogenic acute regulatory protein
ISO
methoxychlor
RGD
PMID:18401575
RGD:4890969
NCBI chr16:27,326,355...27,331,025
Ensembl chr16:27,326,355...27,331,025
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ASIP
agouti signaling protein
involved_in acts_upstream_of_or_within
ISS ISO
(PMID:7665913)
UniProt MGI
PMID:7665913
GO_REF:0000024
NCBI chr24:23,338,757...23,393,913
Ensembl chr24:23,354,888...23,393,896
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CITED1
Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr X:56,327,104...56,332,608
Ensembl chr X:56,327,182...56,332,047
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DCT
dopachrome tautomerase
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:7665913)
UniProt MGI Ensembl
PMID:7665913
GO_REF:0000043 GO_REF:0000107
NCBI chr22:45,271,709...45,305,272
Ensembl chr22:45,271,709...45,305,346
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DDT
D-dopachrome tautomerase
involved_in
IEA
UniProt
GO_REF:0000043
NCBI chr26:28,520,189...28,522,539
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MC1R
melanocortin 1 receptor
acts_upstream_of_or_within
ISO
(PMID:7665913)
MGI
PMID:7665913
NCBI chr 5:63,694,296...63,695,249
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MFSD12
major facilitator superfamily domain containing 12
involved_in
IEA
UniProt
GO_REF:0000043
NCBI chr20:55,855,102...55,863,606
Ensembl chr20:55,858,687...55,862,181
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MYO5A
myosin VA
acts_upstream_of_or_within
ISO
(PMID:7665913)
MGI
PMID:7665913
NCBI chr30:17,990,521...18,122,160
Ensembl chr30:17,888,419...18,213,061
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OCA2
OCA2 melanosomal transmembrane protein
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:7665913), (PMID:9548375)
Ensembl MGI TreeGrafter
PMID:7665913 PMID:9548375
GO_REF:0000107 GO_REF:0000118
NCBI chr 3:32,361,825...32,713,631
Ensembl chr 3:32,361,517...32,713,572
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PMEL
premelanosome protein
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:7665913)
Ensembl MGI
PMID:7665913
GO_REF:0000107
NCBI chr10:292,595...327,618
Ensembl chr10:292,597...300,098
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SLC24A5
solute carrier family 24 member 5
acts_upstream_of
ISO
(PMID:18166528)
MGI
PMID:18166528
NCBI chr30:14,372,019...14,400,262
Ensembl chr30:14,371,778...14,400,152
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TRPC1
transient receptor potential cation channel subfamily C member 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr23:38,350,066...38,416,086
Ensembl chr23:38,350,278...38,414,464
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TYR
tyrosinase
involved_in acts_upstream_of_or_within
IEA ISO IBA
(PMID:7665913) (PMID:9548375)
UniProt MGI TreeGrafter GO_Central Ensembl
PMID:7665913 PMID:9548375
GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118
NCBI chr21:10,799,940...10,894,187
Ensembl chr21:10,799,940...10,894,191
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TYRP1
tyrosinase related protein 1
involved_in
IEA
UniProt
GO_REF:0000043
NCBI chr11:33,317,084...33,336,029
Ensembl chr11:33,317,121...33,335,498
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AMACR
alpha-methylacyl-CoA racemase
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:73,815,438...73,836,016
Ensembl chr 4:73,815,291...73,867,437
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DCT
dopachrome tautomerase
involved_in
IEA
Ensembl TreeGrafter
GO_REF:0000107 GO_REF:0000118
NCBI chr22:45,271,709...45,305,272
Ensembl chr22:45,271,709...45,305,346
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OCA2
OCA2 melanosomal transmembrane protein
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:32,361,825...32,713,631
Ensembl chr 3:32,361,517...32,713,572
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SLC45A2
solute carrier family 45 member 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:73,838,684...73,868,222
Ensembl chr 4:73,815,291...73,867,437
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BCL2
BCL2 apoptosis regulator
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:11709185)
Ensembl MGI
PMID:11709185
GO_REF:0000107
NCBI chr 1:13,733,849...13,900,653
Ensembl chr 1:13,731,406...13,900,658
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MYO5A
myosin VA
acts_upstream_of_or_within
ISO
(PMID:9548375)
MGI
PMID:9548375
NCBI chr30:17,990,521...18,122,160
Ensembl chr30:17,888,419...18,213,061
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TYRP1
tyrosinase related protein 1
acts_upstream_of_or_within
ISO
(PMID:9548375)
MGI
PMID:9548375
NCBI chr11:33,317,084...33,336,029
Ensembl chr11:33,317,121...33,335,498
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VHL
von Hippel-Lindau tumor suppressor
acts_upstream_of_or_within
ISO
(PMID:22627278)
MGI
PMID:22627278
NCBI chr20:8,206,616...8,211,347
Ensembl chr20:8,206,616...8,211,323
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MFSD12
major facilitator superfamily domain containing 12
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr20:55,855,102...55,863,606
Ensembl chr20:55,858,687...55,862,181
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OPN3
opsin 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:32,995,047...33,040,873
Ensembl chr 7:32,996,938...33,040,876
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RAPGEF2
Rap guanine nucleotide exchange factor 2
involved_in
ISS
UniProt
GO_REF:0000024
NCBI chr15:56,133,094...56,353,609
Ensembl chr15:56,174,578...56,352,569
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SLC24A5
solute carrier family 24 member 5
acts_upstream_of_or_within
ISO
(PMID:18166528)
MGI
PMID:18166528
NCBI chr30:14,372,019...14,400,262
Ensembl chr30:14,371,778...14,400,152
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WNT5A
Wnt family member 5A
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr20:34,756,430...34,790,937
Ensembl chr20:34,769,930...34,786,673
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DDC
dopa decarboxylase
ISO
scoparone
RGD
PMID:19185027
RGD:5128879
NCBI chr18:1,802,239...1,876,714
Ensembl chr18:1,803,273...1,867,616
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TH
tyrosine hydroxylase
ISO
scoparone
RGD
PMID:19185027
RGD:5128879
NCBI chr18:46,327,136...46,334,973
Ensembl chr18:46,327,137...46,335,602
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APPL1
adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr20:33,123,577...33,166,831
Ensembl chr20:33,130,723...33,166,792
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ASIP
agouti signaling protein
involved_in
IEA
TreeGrafter
GO_REF:0000118
NCBI chr24:23,338,757...23,393,913
Ensembl chr24:23,354,888...23,393,896
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ATP7A
ATPase copper transporting alpha
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr X:60,203,336...60,356,525
Ensembl chr X:60,203,270...60,352,869
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CDH3
cadherin 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 5:80,864,859...80,912,136
Ensembl chr 5:80,863,661...80,913,019
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GIPC1
GIPC PDZ domain containing family member 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr20:48,144,076...48,155,069
Ensembl chr20:48,150,498...48,157,191
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OPN3
opsin 3
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:32,995,047...33,040,873
Ensembl chr 7:32,996,938...33,040,876
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PMEL
premelanosome protein
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr10:292,595...327,618
Ensembl chr10:292,597...300,098
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PTGER1
prostaglandin E receptor 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr20:48,156,055...48,159,838
Ensembl chr20:48,157,973...48,159,921
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RAB38
RAB38, member RAS oncogene family
ISO
RGD
PMID:17043139
RGD:152025192
NCBI chr21:11,769,924...11,823,546
Ensembl chr21:11,769,351...11,822,815
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TYRP1
tyrosinase related protein 1
involved_in
ISO
(MGI:5294257|PMID:21949658) (PMID:21996312)
CACAO
PMID:21949658 PMID:21996312
MGI:5294257
NCBI chr11:33,317,084...33,336,029
Ensembl chr11:33,317,121...33,335,498
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CTNS
cystinosin, lysosomal cystine transporter
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 9:47,474,488...47,490,951
Ensembl chr 9:47,473,901...47,490,252
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MFSD12
major facilitator superfamily domain containing 12
involved_in
IMP IBA IEA
(PMID:31117290)
UniProt GO_Central Ensembl
PMID:31117290
GO_REF:0000033 GO_REF:0000107
NCBI chr20:55,855,102...55,863,606
Ensembl chr20:55,858,687...55,862,181
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SLC7A11
solute carrier family 7 member 11
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:16037214)
Ensembl MGI
PMID:16037214
GO_REF:0000107
NCBI chr19:4,289,792...4,379,060
Ensembl chr19:4,289,850...4,389,048
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LACTB2
lactamase beta 2
involved_in
IEA
TreeGrafter
GO_REF:0000118
NCBI chr29:19,723,155...19,749,147
Ensembl chr29:19,720,144...19,749,387
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BDH2
3-hydroxybutyrate dehydrogenase 2
involved_in
IEA
TreeGrafter
GO_REF:0000118
NCBI chr32:24,420,946...24,442,384
Ensembl chr32:24,420,951...24,442,384
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CYP1A2
cytochrome P450 family 1 subfamily A member 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr30:37,818,400...37,824,192
Ensembl chr30:37,799,140...37,824,135
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ARL1
ADP ribosylation factor like GTPase 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr15:40,390,091...40,401,043
Ensembl chr15:40,390,890...40,401,060
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AS3MT
arsenite methyltransferase
involved_in
IEA
TreeGrafter
GO_REF:0000118
NCBI chr28:15,334,141...15,350,749
G
BORCS7
BLOC-1 related complex subunit 7
involved_in
IEA
TreeGrafter
GO_REF:0000118
NCBI chr28:15,314,219...15,324,522
Ensembl chr28:15,314,266...15,350,714
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CNNM2
cyclin and CBS domain divalent metal cation transport mediator 2
involved_in
IEA
TreeGrafter
GO_REF:0000118
NCBI chr28:15,366,035...15,515,261
Ensembl chr28:15,366,601...15,514,886
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CYP1A1
cytochrome P450 family 1 subfamily A member 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17166882)
Ensembl MGI
PMID:17166882
GO_REF:0000107
NCBI chr30:37,793,277...37,799,535
Ensembl chr30:37,793,508...37,796,866
G
CYP1A2
cytochrome P450 family 1 subfamily A member 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17166882)
Ensembl MGI
PMID:17166882
GO_REF:0000107
NCBI chr30:37,818,400...37,824,192
Ensembl chr30:37,799,140...37,824,135
G
CYP1B1
cytochrome P450 family 1 subfamily B member 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:10051580), (PMID:17166882)
Ensembl MGI
PMID:10051580 PMID:17166882
GO_REF:0000107
NCBI chr17:30,273,281...30,278,554
Ensembl chr17:30,272,749...30,278,554
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FMO1
flavin containing dimethylaniline monoxygenase 1
involved_in
ISO
(PMID:15144220)
BHF-UCL
PMID:15144220
NCBI chr 7:27,599,230...27,623,081
Ensembl chr 7:27,599,267...27,618,237
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FMO2
flavin containing dimethylaniline monoxygenase 2
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:27,634,624...27,659,111
Ensembl chr 7:27,634,900...27,659,037
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N6AMT1
N-6 adenine-specific DNA methyltransferase 1
involved_in
ISO
(PMID:25997655)
UniProt
PMID:25997655
NCBI chr31:23,895,558...23,934,183
Ensembl chr31:23,895,584...23,909,940
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PAM
peptidylglycine alpha-amidating monooxygenase
ISO
enhances lethality of scorpion neurotoxin BmK ITa1
RGD
PMID:12721493
RGD:6483565
NCBI chr 3:8,141,508...8,312,081
Ensembl chr 3:8,142,061...8,290,477
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